TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119408.1 + phase: 0 /pseudo
         (600 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               103  8e-23
BP060613                                                               30  1.1
BP053555                                                               30  1.1
CN825200                                                               23  2.8
TC19893 similar to UP|Q7XA86 (Q7XA86) At3g51390, partial (12%)         28  4.3
TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete         28  5.6
AV415082                                                               27  9.5
TC12768 similar to UP|Q9FH10 (Q9FH10) Serine/threonine protein k...    27  9.5

>TC18710 
          Length = 843

 Score =  103 bits (257), Expect = 8e-23
 Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
 Frame = +2

Query: 5   RIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKAYDS 64
           R+K  +P++ +  QS F+ GR I DN LIV E FH I +       +  IKLD+ KAYD 
Sbjct: 419 RLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDR 598

Query: 65  LKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF-PLI 123
           ++W F+E +L A GF  N +  IM+ +  V+++  ING       PQRG+RQGDPF P +
Sbjct: 599 VEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYL 778

Query: 124 FLY 126
           FL+
Sbjct: 779 FLF 787


>BP060613 
          Length = 378

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 32/106 (30%), Positives = 46/106 (43%)
 Frame = +2

Query: 306 FGGVALIVKRRFTGPKEKIFLNPDIRVEWASKFLEILIWPCLPNKSRDFRLIKNPLSPEF 365
           FGGV L     FTG      LN  ++    SK L+  I P  P++  +F  I+     + 
Sbjct: 44  FGGV-LRGHEVFTGGNGTF*LN*KMKEGLVSKTLKYRIKPS*PSRLGEFCTIQMHFGFKS 220

Query: 366 SKLNISLTKTFSRLI*VIAQVMLGGAYSILFGLFRKGVAGK*EMGK 411
            K   SLT  F R +  +     G AYS++        +G  E+GK
Sbjct: 221 *KPYTSLTMIFYRPLNELVLPGFGLAYSMVGSFSSSKASGNWEVGK 358


>BP053555 
          Length = 516

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 18/61 (29%), Positives = 35/61 (56%)
 Frame = +3

Query: 475 LLIWPMMMRLCGILIKMANIRCTVVIKLYRTEKLLLLPSLLIATLRLIYGKNCGPYTLFP 534
           ++ W  +++L    I++ N+R      LY+ + L+++  +LIAT  L+   N  P+ LFP
Sbjct: 216 MIFWDQLLKLN---IQLLNLRRYSNTLLYQIK*LVVMLLILIATFSLV-KINLAPFILFP 383

Query: 535 Y 535
           +
Sbjct: 384 F 386


>CN825200 
          Length = 620

 Score = 23.5 bits (49), Expect(2) = 2.8
 Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 4/43 (9%)
 Frame = -1

Query: 496 CTVVIKLYRTEK----LLLLPSLLIATLRLIYGKNCGPYTLFP 534
           C ++I L  T      LLL+  LL+  + L+    CG  TL P
Sbjct: 209 CQILINLCLTTSFIPLLLLVFLLLVVVVLLLCRSGCGTRTLRP 81



 Score = 23.5 bits (49), Expect(2) = 2.8
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = -1

Query: 466 TKIK*NVSLLLIWPMMMRLCGILIKMANIRCT 497
           TKI    S L +W + M    +L  +++I CT
Sbjct: 425 TKILQKGSCLRLWHLSMTSLSVLCSISHITCT 330


>TC19893 similar to UP|Q7XA86 (Q7XA86) At3g51390, partial (12%)
          Length = 513

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -1

Query: 292 LKACVRRLRKLFVHFGGVALIVKRRFTGPKEKIFLNPDIRVEWASKFLEILIW--PCLPN 349
           ++ACVR    L++  GG  L  +   T   E ++++ +   EW   F     W  P + N
Sbjct: 219 IRACVRFGLFLYLLRGG*WLHTEEASTSTAEVVYISTNSFTEWMHSF-----WN*P*IRN 55

Query: 350 KSRDFRLIKNPLSP 363
            S  + LI++ + P
Sbjct: 54  PSSPYELIRSLICP 13


>TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete
          Length = 923

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 23/59 (38%), Positives = 35/59 (58%), Gaps = 6/59 (10%)
 Frame = -2

Query: 150 LPLMPQLYLIYFMLM--IVSYFV-GPNPRRLVLL*TF---FRFIKRLLDRKLIWINQRW 202
           L L+P L L +F+ +  +V + V G  PRRLV+L  F   F+F+ ++L+  L    QRW
Sbjct: 253 LLLLPLLVLRWFLPLGVLVQWLVLGQEPRRLVVLWLFPGMFQFVPQVLE--LAVQPQRW 83


>AV415082 
          Length = 418

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 335 ASKFLEILIWPCLPNKS--RDFRLIKNP 360
           +SKFL IL+ PC P  S  +  RL+K+P
Sbjct: 233 SSKFLPILLIPCPPMNS*KKTTRLLKHP 150


>TC12768 similar to UP|Q9FH10 (Q9FH10) Serine/threonine protein kinase-like,
           partial (18%)
          Length = 597

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 343 IWPCLPNKSRDF 354
           +WPCLP+KS+ F
Sbjct: 579 LWPCLPSKSKSF 544


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.344    0.154    0.513 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,119,902
Number of Sequences: 28460
Number of extensions: 165081
Number of successful extensions: 1604
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of query: 600
length of database: 4,897,600
effective HSP length: 95
effective length of query: 505
effective length of database: 2,193,900
effective search space: 1107919500
effective search space used: 1107919500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 58 (26.9 bits)