BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149600.2 + phase: 0 /pseudo
(91 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 35 0.008
AW596401 33 0.024
BI893633 homologue to GP|20197337|gb NAM (no apical meristem)-li... 32 0.054
TC211156 32 0.070
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 31 0.091
CA783317 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 31 0.091
TC214884 similar to UP|P93169 (P93169) Early light-induced prote... 31 0.091
TC214882 similar to UP|Q18880 (Q18880) C. elegans GRL-17 protein... 31 0.091
TC219133 UP|Q39879 (Q39879) Mitotic cyclin a2-type, complete 31 0.091
BQ299355 31 0.091
TC209106 similar to UP|Q41101 (Q41101) Phaseolin G-box binding p... 31 0.12
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 31 0.12
TC204100 homologue to UP|Q93WA5 (Q93WA5) Ribosomal protein L32, ... 31 0.12
BQ627518 GP|5726567|gb| glycine-rich RNA-binding protein {Glycin... 31 0.12
AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidop... 30 0.16
TC219143 similar to UP|Q9FJJ8 (Q9FJJ8) Arabidopsis thaliana geno... 30 0.16
TC214506 similar to PIR|T01932|T01932 RNA binding protein homolo... 30 0.16
TC217019 weakly similar to UP|Q94A32 (Q94A32) AT3g43520/T18D12_9... 30 0.16
TC227866 similar to UP|P2B1_DROME (P48456) Serine/threonine prot... 30 0.20
TC226318 UP|ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleo... 27 1.7
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 34.7 bits (78), Expect = 0.008
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -3
Query: 47 PPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWESSSQDSS 91
P P P+C P F +V V + +++SS S +SS SSS SS
Sbjct: 1142 PSPSPACALPLFFFLVLVSSSSSSSSSSSSSSSSSSSSSSSSSSS 1008
>AW596401
Length = 429
Score = 33.1 bits (74), Expect = 0.024
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +1
Query: 45 PPPPPPPSCVFPTFTGVVKVMENQNNTSSF 74
PPPPPPP+ +PT+ N NNT+ F
Sbjct: 181 PPPPPPPTMPYPTW-------NNNNNTTRF 249
>BI893633 homologue to GP|20197337|gb NAM (no apical meristem)-like protein
{Arabidopsis thaliana}, partial (29%)
Length = 423
Score = 32.0 bits (71), Expect = 0.054
Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Frame = +2
Query: 42 RYPPPPPPPPSCVFPTFTGVVKVMENQNNTSSF-SVDVENSSWESS 86
R PPPPPPP S P+ + ++ + + +F S ++ SSW S+
Sbjct: 5 RMPPPPPPPTS---PSTSTIMMITSTTWSCPAFASTQLKKSSWNST 133
>TC211156
Length = 649
Score = 31.6 bits (70), Expect = 0.070
Identities = 17/38 (44%), Positives = 21/38 (54%), Gaps = 6/38 (15%)
Frame = +1
Query: 44 PPPPPPPPSCV------FPTFTGVVKVMENQNNTSSFS 75
PPPPPPPPS V FP+ G+ N ++SS S
Sbjct: 286 PPPPPPPPSNVNYAPNFFPSSGGMAPSYFNMPSSSSSS 399
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 31.2 bits (69), Expect = 0.091
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 49 PPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWESSSQDSS 91
P PSC P F +V + + +++SS S +SS SSS SS
Sbjct: 352 PSPSCALPLFFFLVLLSSSSSSSSSSSSSSSSSSSSSSSISSS 224
>CA783317 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (23%)
Length = 159
Score = 31.2 bits (69), Expect = 0.091
Identities = 10/13 (76%), Positives = 11/13 (83%)
Frame = -2
Query: 44 PPPPPPPPSCVFP 56
PP PPPPP+C FP
Sbjct: 62 PPXPPPPPACFFP 24
Score = 27.7 bits (60), Expect = 1.0
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 44 PPPPPPPPS 52
PPPPPPPPS
Sbjct: 96 PPPPPPPPS 70
Score = 27.7 bits (60), Expect = 1.0
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 44 PPPPPPPPS 52
PPPPPPPPS
Sbjct: 147 PPPPPPPPS 121
Score = 26.6 bits (57), Expect = 2.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 44 PPPPPPPPSCVFP 56
PPPPPPPP P
Sbjct: 106 PPPPPPPPPPPLP 68
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 69 PPPPPPPP 46
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 66 PPPPPPPP 43
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 108 PPPPPPPP 85
Score = 24.6 bits (52), Expect = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 44 PPPPPPPPS 52
P PPPPPPS
Sbjct: 151 PSPPPPPPS 125
>TC214884 similar to UP|P93169 (P93169) Early light-induced protein, partial
(98%)
Length = 2021
Score = 31.2 bits (69), Expect = 0.091
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = -3
Query: 43 YPPPPPPPPSCVFPTFTGVVKVMENQNNTSSF 74
+PPPPPPP + P F K + TS F
Sbjct: 492 HPPPPPPPSPPLLPPFRSTGKKQTTTSPTSPF 397
>TC214882 similar to UP|Q18880 (Q18880) C. elegans GRL-17 protein
(Corresponding sequence C56A3.1), partial (6%)
Length = 593
Score = 31.2 bits (69), Expect = 0.091
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = +2
Query: 43 YPPPPPPPPSCVFPTFTGVVKVMENQNNTSSF 74
+PPPPPPP + P F K + TS F
Sbjct: 308 HPPPPPPPSPPLLPPFRSTGKKQTTTSPTSPF 403
>TC219133 UP|Q39879 (Q39879) Mitotic cyclin a2-type, complete
Length = 1804
Score = 31.2 bits (69), Expect = 0.091
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 45 PPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWES 85
PP PPPP VV V ++++T S S D SS +S
Sbjct: 371 PPTPPPPVATVTVPAPVVDVSPSKSDTMSVSTDESMSSCDS 493
>BQ299355
Length = 422
Score = 31.2 bits (69), Expect = 0.091
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 43 YPPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSV 76
+ PPPPPPPS T T V M ++ SSFSV
Sbjct: 311 HTPPPPPPPSESTATIT-AVPGMTSRGRGSSFSV 409
>TC209106 similar to UP|Q41101 (Q41101) Phaseolin G-box binding protein PG1,
partial (40%)
Length = 1101
Score = 30.8 bits (68), Expect = 0.12
Identities = 12/42 (28%), Positives = 22/42 (51%)
Frame = +3
Query: 44 PPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWES 85
PPPPPPPP P + V+ + + + ++V+ W++
Sbjct: 540 PPPPPPPPPPPGPPPSNSVEPKKTTSKLADLELEVKIIGWDA 665
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 30.8 bits (68), Expect = 0.12
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 42 RYPPPPPPPP 51
RYPPPPPPPP
Sbjct: 1581 RYPPPPPPPP 1552
Score = 28.9 bits (63), Expect = 0.45
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 43 YPPPPPPPP 51
YPPPPPPPP
Sbjct: 1518 YPPPPPPPP 1492
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 1512 PPPPPPPP 1489
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 1506 PPPPPPPP 1483
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 1503 PPPPPPPP 1480
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 1509 PPPPPPPP 1486
>TC204100 homologue to UP|Q93WA5 (Q93WA5) Ribosomal protein L32, complete
Length = 1145
Score = 30.8 bits (68), Expect = 0.12
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 42 RYPPPPPPPP 51
RYPPPPPPPP
Sbjct: 296 RYPPPPPPPP 325
Score = 28.9 bits (63), Expect = 0.45
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 43 YPPPPPPPP 51
YPPPPPPPP
Sbjct: 359 YPPPPPPPP 385
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 365 PPPPPPPP 388
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 368 PPPPPPPP 391
>BQ627518 GP|5726567|gb| glycine-rich RNA-binding protein {Glycine max},
partial (16%)
Length = 118
Score = 30.8 bits (68), Expect = 0.12
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2
Query: 42 RYPPPPPPPP 51
RYPPPPPPPP
Sbjct: 90 RYPPPPPPPP 61
>AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidopsis
thaliana}, partial (19%)
Length = 342
Score = 30.4 bits (67), Expect = 0.16
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 44 PPPPPPPPSCVFPTFT 59
PPPPPPPPS PT T
Sbjct: 269 PPPPPPPPSPSEPTTT 316
Score = 25.0 bits (53), Expect = 6.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 45 PPPPPPPSCVFPTFTGVVKVMENQNNTSSFSV 76
PPPPPP S P+ T N S SV
Sbjct: 125 PPPPPPTSPAAPSGTSSASSSAES*NPSKPSV 220
>TC219143 similar to UP|Q9FJJ8 (Q9FJJ8) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K19B1, partial (88%)
Length = 689
Score = 30.4 bits (67), Expect = 0.16
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 43 YPPPPPPPPSCVF 55
+PPPPPPPP+ +F
Sbjct: 472 FPPPPPPPPNALF 434
>TC214506 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment) {Nicotiana tabacum;} , partial (20%)
Length = 662
Score = 30.4 bits (67), Expect = 0.16
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 43 YPPPPPPPPS 52
YPPPPPPPPS
Sbjct: 386 YPPPPPPPPS 415
Score = 24.6 bits (52), Expect = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 44 PPPPPPPPS 52
PPPPPPP S
Sbjct: 392 PPPPPPPSS 418
>TC217019 weakly similar to UP|Q94A32 (Q94A32) AT3g43520/T18D12_90, partial
(48%)
Length = 929
Score = 30.4 bits (67), Expect = 0.16
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 44 PPPPPPPPSCVFP 56
PPPPPPPP FP
Sbjct: 320 PPPPPPPPPLAFP 282
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 323 PPPPPPPP 300
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 326 PPPPPPPP 303
>TC227866 similar to UP|P2B1_DROME (P48456) Serine/threonine protein
phosphatase 2B catalytic subunit 1
(Calmodulin-dependent calcineurin A1 subunit) , partial
(3%)
Length = 1013
Score = 30.0 bits (66), Expect = 0.20
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 44 PPPPPPPPSCVFP 56
PPPPPPPP FP
Sbjct: 199 PPPPPPPPPSFFP 161
>TC226318 UP|ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0
(hnRNP A0), partial (5%)
Length = 514
Score = 26.9 bits (58), Expect = 1.7
Identities = 8/9 (88%), Positives = 9/9 (99%)
Frame = -3
Query: 42 RYPPPPPPP 50
+YPPPPPPP
Sbjct: 242 KYPPPPPPP 216
Score = 24.6 bits (52), Expect = 8.5
Identities = 18/41 (43%), Positives = 19/41 (45%), Gaps = 2/41 (4%)
Frame = -3
Query: 45 PPPPPPPSCVFPTFTGVVKVMENQNNTSSFSV--DVENSSW 83
PPPPPPP KV Q T FSV +EN SW
Sbjct: 236 PPPPPPPLTYSDLVCCPCKV*VEQGFT-VFSVFWIMENVSW 117
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.126 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,444,009
Number of Sequences: 63676
Number of extensions: 103887
Number of successful extensions: 7595
Number of sequences better than 10.0: 535
Number of HSP's better than 10.0 without gapping: 2503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5369
length of query: 91
length of database: 12,639,632
effective HSP length: 67
effective length of query: 24
effective length of database: 8,373,340
effective search space: 200960160
effective search space used: 200960160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC149600.2