BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149600.1 - phase: 0
(494 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 404 e-113
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 404 e-113
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 181 9e-46
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 176 3e-44
BM307983 167 1e-41
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 165 4e-41
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 156 2e-38
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 114 1e-37
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 152 3e-37
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 144 7e-35
BU764568 107 2e-34
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 126 2e-31
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 131 8e-31
BM086359 130 2e-30
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 129 2e-30
BU549979 124 7e-29
BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {... 123 2e-28
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 122 3e-28
CO982036 121 8e-28
CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 120 1e-27
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 404 bits (1039), Expect = e-113
Identities = 204/489 (41%), Positives = 310/489 (62%), Gaps = 1/489 (0%)
Frame = +1
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE+ K+N W+LV P G +G +W+F K +G I R KARLVA+GYTQ GV
Sbjct: 3253 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 3432
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVY-SN 119
D+ ETFAPVA+L ++R+LL +A + L Q DVK+AFL+G ++E+ Y++ P G V ++
Sbjct: 3433 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTH 3612
Query: 120 GLKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
V +LKKALYGLKQ+PRAW+ R T+ + GY+ D TLF+K+ + IYVD
Sbjct: 3613 PDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVD 3792
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
D++ G + + + + + S+FEM +G L YF+G++V + + IFL Q KY +++ +
Sbjct: 3793 DIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKK 3972
Query: 240 TGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQF 299
G+ + TP + KL D+ Y+S++G L+YL+ +RPDITYAV V +++
Sbjct: 3973 FGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARY 4152
Query: 300 MHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFT 359
+P+ H++ V+RIL+Y+ T GI++ + + GY DADWAGSADDR+STSG
Sbjct: 4153 QANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCF 4332
Query: 360 FVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDN 419
++G NL++W SKKQ V+ S+AE E+ +L+W+K +L + E ++ M+LYCDN
Sbjct: 4333 YLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE-QDVMTLYCDN 4509
Query: 420 TSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFN 479
SAI I+ NPVQH RTKH++I H+I++ +D I V +E+Q+AD+ TK + + F
Sbjct: 4510 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFE 4689
Query: 480 ESLLKLGMC 488
+ KLG+C
Sbjct: 4690 KLRGKLGIC 4716
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 404 bits (1037), Expect = e-113
Identities = 202/489 (41%), Positives = 310/489 (63%), Gaps = 1/489 (0%)
Frame = +1
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE+ K+N W+LV P G +G +W+F K +G I R KARLVA+GYTQ GV
Sbjct: 3250 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 3429
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVY-SN 119
D+ ETFAPVA+L ++R+LL +A + L Q DVK+AFL+G ++E++Y++ P G ++
Sbjct: 3430 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTH 3609
Query: 120 GLKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
V +LKKALYGLKQ+PRAW+ R T+ + GY+ D TLF+K+ + IYVD
Sbjct: 3610 PDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVD 3789
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
D++ G + + + + + S+FEM +G L YF+G++V + + IFL Q +Y +++ +
Sbjct: 3790 DIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKK 3969
Query: 240 TGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQF 299
G+ + TP + KL D+ Y+S++G L+YL+ +RPDITYAV V +++
Sbjct: 3970 FGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARY 4149
Query: 300 MHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFT 359
+P+ H+ V+RIL+Y+ T GI++ + + + GY DADWAGSADDR+STSG
Sbjct: 4150 QANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCF 4329
Query: 360 FVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDN 419
++G NL++W SKKQ V+ S+AE E+ +L+W+K +L + E ++ M+LYCDN
Sbjct: 4330 YLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE-QDVMTLYCDN 4506
Query: 420 TSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFN 479
SAI I+ NPVQH RTKH++I H+I++ +D I V +E+Q+AD+ TK + + F
Sbjct: 4507 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFE 4686
Query: 480 ESLLKLGMC 488
+ KLG+C
Sbjct: 4687 KLRGKLGIC 4713
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 181 bits (458), Expect = 9e-46
Identities = 89/162 (54%), Positives = 112/162 (68%)
Frame = +2
Query: 332 GHLRVEGYTDADWAGSADDRRSTSGYFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALG 391
G+ ++ GY DADWAG DRRSTSGY F+GGNLV+W+SKKQ VVARSSAE E+R MA+
Sbjct: 5 GNTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMV 184
Query: 392 MCELLWVKSVLSDLGFEPKEAMSLYCDNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDA 451
CEL+W+K L +L F + M LYCDN +A+ IA NPV H+RTKH+EID HFI+EKL +
Sbjct: 185 TCELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLS 364
Query: 452 GTIVFPFVRSEQQLADMLTKGVSSKVFNESLLKLGMCDIHAP 493
IV F+ S Q D+LTK + KLG D++AP
Sbjct: 365 KEIVTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYAP 490
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 176 bits (445), Expect = 3e-44
Identities = 85/131 (64%), Positives = 102/131 (76%), Gaps = 2/131 (1%)
Frame = -2
Query: 17 VTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGVDYQETFAPVAKLNTVR 76
V LP GK VGCRWV+T+K G +DR KARLVAKGYTQ YG+DY +TF+PVAKL TVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 77 ILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSN--GLKVCKLKKALYGLK 134
+ L++AA WPL Q D+KNAFLHG++ EDIYM+ PPG V GL VCKL ++LYGLK
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGL-VCKLHRSLYGLK 50
Query: 135 QSPRAWFGRFT 145
QSPRAWFG+F+
Sbjct: 49 QSPRAWFGKFS 17
>BM307983
Length = 406
Score = 167 bits (423), Expect = 1e-41
Identities = 82/133 (61%), Positives = 101/133 (75%), Gaps = 2/133 (1%)
Frame = +2
Query: 26 VGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGVDYQETFAPVAK-LNTVRILLSLAAN 84
VGCRW++T+K+ AD T+DRYKARLVAKGY Q+YG+DY+ETFA K + + A
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 85 QDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSN-GLKVCKLKKALYGLKQSPRAWFGR 143
W + QFDVKNAFLHG + E++YM+ PPG SN G KVC+LKKALYGLKQSPRAWFGR
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 144 FTKSMKTFGYKAS 156
FT++M + GYK S
Sbjct: 362 FTQAMLSLGYKQS 400
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 165 bits (418), Expect = 4e-41
Identities = 78/216 (36%), Positives = 132/216 (61%), Gaps = 3/216 (1%)
Frame = +1
Query: 268 DKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFMHDPRKPHMDVVERILRYLKSTPGKGIL 327
D ++ L+G L YL ++RP+I +AV+++S+FM PR HM +R+LR +K T G G+L
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 328 F---SNNGHLRVEGYTDADWAGSADDRRSTSGYFTFVGGNLVTWRSKKQPVVARSSAEVE 384
F + +G + GYTD+DW + +ST GY V SKKQ V+A S+ E E
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 385 FRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNTSAIEIAHNPVQHDRTKHVEIDRHF 444
+ +LG C+ +W+ ++L +L ++ ++L DN SAI +A +P H R+KH+E+ H+
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 445 IKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
I++++ G + + ++E+QLAD++TK + F +
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQ 657
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 156 bits (394), Expect = 2e-38
Identities = 84/179 (46%), Positives = 113/179 (62%), Gaps = 2/179 (1%)
Frame = +1
Query: 40 GTIDRYKARLVAKGYTQSYGVDYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFL 99
GTID++KARLVAK YTQ YG DY TF+PVAK+ V +L S+A WPL D KNAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 100 HGEISEDIYMDTPPGMVY--SNGLKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASN 157
HG + E++YM+ P G V + VC+L ++ YGLKQSPRAW F Y +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHE 381
Query: 158 SDHTLFLKRGEGKITALIIYVDDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGI 216
+DH++F LI+YVDD+ +TG++Q I+ L+ L +F+ K LG L+YF+GI
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 114 bits (285), Expect(2) = 1e-37
Identities = 58/86 (67%), Positives = 65/86 (75%)
Frame = +3
Query: 337 EGYTDADWAGSADDRRSTSGYFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELL 396
+GYTDADWAGS DRRSTSGY TFVGGNLV+ SKKQ VVARSSAE EFR +A G+CE L
Sbjct: 150 KGYTDADWAGSVTDRRSTSGYCTFVGGNLVS*-SKKQSVVARSSAEAEFRALAHGICETL 326
Query: 397 WVKSVLSDLGFEPKEAMSLYCDNTSA 422
WVK +L +L + LYCDN SA
Sbjct: 327 WVKKLLQELKVHSSPPIKLYCDNKSA 404
Score = 60.8 bits (146), Expect(2) = 1e-37
Identities = 29/52 (55%), Positives = 39/52 (74%)
Frame = +1
Query: 289 ITYAVNVVSQFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYT 340
I +AV++VSQFMH P H++ RILRYLK +PG+G L+ N+GHL+VE T
Sbjct: 7 IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRG-LYKNHGHLQVEKAT 159
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 152 bits (385), Expect = 3e-37
Identities = 69/112 (61%), Positives = 88/112 (77%)
Frame = +3
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
MV+EM L+ N TW+LV LP GK TVGCRWV+T+K +G +DR KARLVAKGYTQ YG+
Sbjct: 69 MVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDRLKARLVAKGYTQVYGI 248
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTP 112
+Y +TF+PV L TVR+ L++AA + WPL Q D+KNAFLHG++ EDIYM+ P
Sbjct: 249 EYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLEEDIYMEQP 404
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 144 bits (364), Expect = 7e-35
Identities = 71/146 (48%), Positives = 97/146 (65%), Gaps = 1/146 (0%)
Frame = -3
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE+ ++NN W LV P +G +WVF K G I R KARLVAKGY Q G+
Sbjct: 455 MQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEGI 276
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGM-VYSN 119
DY+ET+APVA+L +R+LL+ + ++ L Q DVK+AFL+G I E++Y++ PPG +
Sbjct: 275 DYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPDK 96
Query: 120 GLKVCKLKKALYGLKQSPRAWFGRFT 145
V KL+KALYGLKQ+PRAW+ R +
Sbjct: 95 PTHVYKLQKALYGLKQAPRAWYERIS 18
>BU764568
Length = 420
Score = 107 bits (268), Expect(2) = 2e-34
Identities = 49/85 (57%), Positives = 64/85 (74%)
Frame = +3
Query: 354 TSGYFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAM 413
TSGY +GGNL++W+SKKQ VVA+SSAE E+R MAL CEL+W+K +L +L FE M
Sbjct: 165 TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQM 344
Query: 414 SLYCDNTSAIEIAHNPVQHDRTKHV 438
+L CDN +A+ IA NP+ H RTKH+
Sbjct: 345 TLICDNQAALHIASNPIFH*RTKHI 419
Score = 57.0 bits (136), Expect(2) = 2e-34
Identities = 26/61 (42%), Positives = 38/61 (61%)
Frame = +1
Query: 297 SQFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSG 356
SQF++ P + H + V IL+ KS PGKG+++ + GH ++ GY+DAD GS DR
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDRHQDIV 180
Query: 357 Y 357
Y
Sbjct: 181 Y 183
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 126 bits (317), Expect(2) = 2e-31
Identities = 59/109 (54%), Positives = 77/109 (70%)
Frame = +2
Query: 341 DADWAGSADDRRSTSGYFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKS 400
DA+WA S DR ST GY +G NLV W+S K VVARSSAE E++ M + CEL+W+K
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 401 VLSDLGFEPKEAMSLYCDNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKL 449
+L +L F + M L CDN +A+ IA NPV H+RTKH+EID HF++EK+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 27.7 bits (60), Expect(2) = 2e-31
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +3
Query: 454 IVFPFVRSEQQLADMLTKGVSSKVFNESLLKLGMCDIHAPT 494
++ FV S QLA++ TK + KLG +++A T
Sbjct: 348 VIIEFVSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAST 470
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 131 bits (329), Expect = 8e-31
Identities = 69/131 (52%), Positives = 87/131 (65%), Gaps = 3/131 (2%)
Frame = -2
Query: 367 TWR---SKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNTSAI 423
TW +K + ARSSA+ E+R MA G+CE+L +K +L +L M LYCDN +AI
Sbjct: 444 TWXXGGTKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMKLYCDNKAAI 265
Query: 424 EIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNESLL 483
I+ NPVQH RTKHVEIDR FIKEK+DAG I PF+ QQ+AD+ TKG+ F +
Sbjct: 264 NISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLFRPNFEFFVS 85
Query: 484 KLGMCDIHAPT 494
KL M DI+APT
Sbjct: 84 KLDMLDIYAPT 52
>BM086359
Length = 427
Score = 130 bits (326), Expect = 2e-30
Identities = 67/142 (47%), Positives = 93/142 (65%)
Frame = +1
Query: 214 MGIEVARSKHGIFLCQRKYTLDLLSETGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQ 273
+GI+VA+S +GI + Q KY LD+L+ETG+L + TP++ N KL + D GR
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 274 SLVGKLIYLSHTRPDITYAVNVVSQFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGH 333
LVG+L YL+ TR DIT+AV V+SQF+ DP + RILRY+K+ PG G+L+ + G+
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLYEDKGN 360
Query: 334 LRVEGYTDADWAGSADDRRSTS 355
+V Y DADW GS D+ STS
Sbjct: 361 GKVVCYFDADWPGSPSDKSSTS 426
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 129 bits (325), Expect = 2e-30
Identities = 72/185 (38%), Positives = 111/185 (59%), Gaps = 4/185 (2%)
Frame = +3
Query: 313 RILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTFVGGNLVTWRSKK 372
R+L+YLK P KG+ FS +++ G++DADWA D +S + Y F+G +L++W++KK
Sbjct: 27 RVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWKAKK 206
Query: 373 QPVVAR--SSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNTSAIEIAHNPV 430
Q V+R SS+E ++R + CEL W+ +L DL +YCDN SA++ P+
Sbjct: 207 QNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDL-----HVTLIYCDNQSALQ*L--PI 365
Query: 431 QHDRTKHVEIDRHFIKEKLDAGTI--VFPFVRSEQQLADMLTKGVSSKVFNESLLKLGMC 488
+ +EID H ++EK G + + P V S QLAD+ TK +S K+F+ +L KLG+
Sbjct: 366 KVIYHGQLEIDCHIVREKTQQGLMHCLLP-VSSSNQLADIFTKALSPKLFSSNLSKLGLS 542
Query: 489 DIHAP 493
DI P
Sbjct: 543 DIFLP 557
>BU549979
Length = 615
Score = 124 bits (312), Expect = 7e-29
Identities = 64/193 (33%), Positives = 109/193 (56%), Gaps = 2/193 (1%)
Frame = -1
Query: 295 VVSQFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRST 354
V+ ++ +P H ++++RYL+ T +++ L V GY+D+D+AG D RRST
Sbjct: 615 VLGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRST 436
Query: 355 SGYFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGF--EPKEA 412
SGY + +V+WRS KQ ++A S+ EVEF +W+KS +S L
Sbjct: 435 SGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRP 256
Query: 413 MSLYCDNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKG 472
+ LYCDN +A+ +A N +R+KH++I I+E++ +V V +E + D LTKG
Sbjct: 255 LKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKG 76
Query: 473 VSSKVFNESLLKL 485
++ K F + ++++
Sbjct: 75 MTPKNFKDHVVRM 37
>BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {Vitis
vinifera}, partial (20%)
Length = 400
Score = 123 bits (309), Expect = 2e-28
Identities = 60/129 (46%), Positives = 82/129 (63%)
Frame = -2
Query: 320 STPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTFVGGNLVTWRSKKQPVVARS 379
S PGKG+ + + H ++ GY D DWAGSA +R T Y + G L++W SKK VV RS
Sbjct: 381 SAPGKGLTYEDREHTQIVGYLDVDWAGSAIHKRPTCRYCVLIRGKLISWNSKKHNVVTRS 202
Query: 380 SAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNTSAIEIAHNPVQHDRTKHVE 439
+VE+R MAL +C+L+W K + L FE M+L CDN +A+ IA N RTKH+E
Sbjct: 201 RTKVEYRAMAL-ICQLIWFKQLRKQLQFEDTMQMTLICDNQAALYIASNQFS-TRTKHIE 28
Query: 440 IDRHFIKEK 448
I+ HF++EK
Sbjct: 27 INCHFVREK 1
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 122 bits (307), Expect = 3e-28
Identities = 61/131 (46%), Positives = 87/131 (65%)
Frame = -2
Query: 128 KALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDDMIVTGNN 187
K+LYGLKQ+ R W+ + T + GY S SD++LF TAL++YVDD+I+ G++
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 188 QDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSETGLLASKS 247
DE ++ L F++K LG LKYF+G+EVA S+ GI + QRKY LDLL ++GLL K
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 248 AETPIEQNHKL 258
A TP++ + KL
Sbjct: 60 ASTPLDTSIKL 28
>CO982036
Length = 674
Score = 121 bits (303), Expect = 8e-28
Identities = 75/205 (36%), Positives = 113/205 (54%), Gaps = 3/205 (1%)
Frame = -2
Query: 174 LIIYVDDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYT 233
L++YVD +I+TG++ I +L L S F +K LG L YF+ IEV +S + R
Sbjct: 646 LLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEV-KSMPDLLFSLRTSI 473
Query: 234 LDLLSETGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAV 293
++ ++ +P+ KL + + Y+S+VG L Y + RP+I++AV
Sbjct: 472 FEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAV 293
Query: 294 NVVSQFMHDPRKPHMDVVERILRYLKSTPGKGILFS---NNGHLRVEGYTDADWAGSADD 350
N V QFM +P H V+RILRYLK + G+ ++ L + G+ DADWA + DD
Sbjct: 292 NKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDD 113
Query: 351 RRSTSGYFTFVGGNLVTWRSKKQPV 375
+RSTSG F+G NL++W KQ V
Sbjct: 112 KRSTSGAAVFLGPNLISWWXXKQQV 38
>CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (13%)
Length = 539
Score = 120 bits (302), Expect = 1e-27
Identities = 59/101 (58%), Positives = 72/101 (70%)
Frame = -2
Query: 394 ELLWVKSVLSDLGFEPKEAMSLYCDNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGT 453
++LW+K +L +L M LYCDN +AI I+ NPVQHDRTKHVEIDRHFIKEK+D G
Sbjct: 502 QILWLKRILEELQLPMTLPMKLYCDNKAAINISQNPVQHDRTKHVEIDRHFIKEKVDTGL 323
Query: 454 IVFPFVRSEQQLADMLTKGVSSKVFNESLLKLGMCDIHAPT 494
I PFV S QQ+AD+LTKG+ F + KL M DI+APT
Sbjct: 322 ICMPFVPSSQQVADILTKGLFRSNFEFLVSKLVMLDIYAPT 200
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,620,526
Number of Sequences: 63676
Number of extensions: 268984
Number of successful extensions: 1247
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of query: 494
length of database: 12,639,632
effective HSP length: 101
effective length of query: 393
effective length of database: 6,208,356
effective search space: 2439883908
effective search space used: 2439883908
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149600.1