TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149576.1 - phase: 1 
         (110 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC229818 similar to UP|CYC6_ARATH (Q93VA3) Cytochrome c6, chloro...   207  8e-55
CO984786                                                              130  6e-44
TC205741 homologue to UP|Q852R1 (Q852R1) Serine palmitoyltransfe...    28  0.51
TC205740 homologue to UP|Q852R1 (Q852R1) Serine palmitoyltransfe...    28  0.51
TC205264 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {A...    27  1.9
TC205263 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {A...    24  9.6

>TC229818 similar to UP|CYC6_ARATH (Q93VA3) Cytochrome c6, chloroplast
           precursor (Soluble cytochrome f) (Cytochrome c553)
           (Cytochrome c-553) (Cytochrome c-552) (Atc6), partial
           (71%)
          Length = 786

 Score =  207 bits (526), Expect = 8e-55
 Identities = 96/110 (87%), Positives = 103/110 (93%)
 Frame = +2

Query: 1   SIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGK 60
           S AQT+DIQRG TLF Q CIGCHDAGGNIIQPG+TLF KDLQRNGVDTEE IY VTYYGK
Sbjct: 278 SSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPGATLFAKDLQRNGVDTEEAIYGVTYYGK 457

Query: 61  GRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETEQK 110
           GRMPGFGKECMPRGQCTFGARLEDEDI+ILAEFVKLQAD+GWPSIET+++
Sbjct: 458 GRMPGFGKECMPRGQCTFGARLEDEDIQILAEFVKLQADQGWPSIETKEE 607


>CO984786 
          Length = 686

 Score =  130 bits (328), Expect(2) = 6e-44
 Identities = 60/68 (88%), Positives = 64/68 (93%)
 Frame = -3

Query: 43  RNGVDTEEEIYRVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
           RN VDTEE IYRVTYYGK RMPGFGKECMPRGQCTFGARLEDEDIK LAEFVKLQAD+GW
Sbjct: 294 RNEVDTEEAIYRVTYYGKARMPGFGKECMPRGQCTFGARLEDEDIKTLAEFVKLQADQGW 115

Query: 103 PSIETEQK 110
           PSIET+++
Sbjct: 114 PSIETKEE 91



 Score = 61.6 bits (148), Expect(2) = 6e-44
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -2

Query: 1   SIAQTIDIQRGATLFSQTCIGCHDAGGNIIQP 32
           S AQT+DIQRG TLF Q CIGCHDAGGNIIQP
Sbjct: 388 SSAQTVDIQRGTTLFRQACIGCHDAGGNIIQP 293


>TC205741 homologue to UP|Q852R1 (Q852R1) Serine palmitoyltransferase, complete
          Length = 2191

 Score = 28.5 bits (62), Expect = 0.51
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 30   IQPGSTLFTKDLQRNGV----DTEEEIYRVTYYGKGRMPGFGKECM 71
            I+  S  F  +LQ+ G     D +  +  +  Y   ++P F +EC+
Sbjct: 1281 IRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL 1418


>TC205740 homologue to UP|Q852R1 (Q852R1) Serine palmitoyltransferase,
          partial (24%)
          Length = 911

 Score = 28.5 bits (62), Expect = 0.51
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 30 IQPGSTLFTKDLQRNGV----DTEEEIYRVTYYGKGRMPGFGKECM 71
          I+  S  F  +LQ+ G     D +  +  +  Y   ++P F +EC+
Sbjct: 30 IRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL 167


>TC205264 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Arabidopsis
           thaliana;} , partial (62%)
          Length = 728

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 73  RGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETEQK 110
           R   +FG+RLED   K +AE   +   K W S  +E K
Sbjct: 155 RATSSFGSRLEDTIKKTVAENPVVLYSKTWCSYSSEVK 268


>TC205263 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Arabidopsis
           thaliana;} , partial (64%)
          Length = 966

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 77  TFGARLEDEDIKILAEFVKLQADKGWPSIETEQK 110
           +FG+RLED   K +AE   +   K W +  +E K
Sbjct: 202 SFGSRLEDTIKKTVAENPVVVYSKTWCTYSSEVK 303


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,421,847
Number of Sequences: 63676
Number of extensions: 47330
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of query: 110
length of database: 12,639,632
effective HSP length: 86
effective length of query: 24
effective length of database: 7,163,496
effective search space: 171923904
effective search space used: 171923904
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)