TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149574.8 + phase: 0 /pseudo
         (868 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222366                                                               30  3.5
TC213936 similar to UP|Q9SEG2 (Q9SEG2) Protein kinase PK4, parti...    30  4.5
TC214822 UP|Q8S3F8 (Q8S3F8) S-adenosylmethionine decarboxylase, ...    30  5.9
AW459043 similar to GP|6164957|gb| vacuolar H+-ATP synthase 16kD...    29  7.8
TC204358 homologue to UP|Q8S3F8 (Q8S3F8) S-adenosylmethionine de...    29  7.8
TC222780 similar to UP|Q6L5C2 (Q6L5C2) 'unknow protein, contains...    29  7.8
TC216778 UP|O24431 (O24431) Calmodulin-like domain protein kinas...    29  7.8
TC205560 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transpor...    29  7.8

>TC222366 
          Length = 860

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -1

Query: 674 TKTLEWGQACTSLSSRYNGYGFVLS*STQTRINWLCRCRLF-IRSSSW*ITNRLFVYKWK 732
           T+  +W     S+    NG  + +S S +  I WL    LF  +S+   I +  F YKW+
Sbjct: 848 TQAFDWKFTENSVHLTINGENYNISVSNRISIIWLELPSLFSYQSALVAILDDKFKYKWE 669

Query: 733 YNNFMEICETDNNSNIIKSRGTFSI 757
            N      + D N +     G FS+
Sbjct: 668 EN*SNRTQKKDENQDQYTRLGYFSV 594


>TC213936 similar to UP|Q9SEG2 (Q9SEG2) Protein kinase PK4, partial (24%)
          Length = 501

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
 Frame = +1

Query: 216 CSNKIECS-CWTISYCKRVSTTHEAWQT-NRFQR*KSSCKKRS*KKRRP 262
           CS    C  CW +++ +R  TT  AW T  R  R*+   K RS* +  P
Sbjct: 43  CSGSTSCEGCWELAHSRR-CTTRRAWTTRTRAWR*RP*AKTRS*TEASP 186


>TC214822 UP|Q8S3F8 (Q8S3F8) S-adenosylmethionine decarboxylase, complete
          Length = 1826

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 92   CGVCSNFSTTTH*DGSSKKVGNICWI*ISIYYKVSRTHD 130
            C + + FS   H DG+SK     C++ +  Y +  R+H+
Sbjct: 1406 CFLPTEFSVAVHVDGASKSFEQTCFLDVKGYCREERSHE 1522


>AW459043 similar to GP|6164957|gb| vacuolar H+-ATP synthase 16kDa
           proteolipid subunit {Dendrobium crumenatum}, partial
           (94%)
          Length = 469

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -1

Query: 83  YFPSANIWMCGVCSNFSTTT----H*DGSSKKVGNICWI*ISI 121
           Y P+  +W+ G+CSN    T    H  G + K       *+S+
Sbjct: 400 YHPTTTLWLLGICSNTGVATNANVHASGEASKTAREAAA*VSV 272


>TC204358 homologue to UP|Q8S3F8 (Q8S3F8) S-adenosylmethionine decarboxylase,
           partial (61%)
          Length = 953

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 92  CGVCSNFSTTTH*DGSSKKVGNICWI*ISIYYKVSRTHD 130
           C + + FS   H DG+SK     C++ +  Y +  R+H+
Sbjct: 432 CFLPTEFSVAVHVDGASKLFDQTCFLDVKGYCREERSHE 548


>TC222780 similar to UP|Q6L5C2 (Q6L5C2) 'unknow protein, contains
           tetratricopeptide (TPR) domain', partial (10%)
          Length = 1034

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = -3

Query: 199 CIH*SKKCD*IIHTSC*CSNKIECSCWTISY 229
           C H ++K    +H SC C    EC CW  +Y
Sbjct: 885 CSHLNQK----VHRSCCCC*DYECECWCANY 805


>TC216778 UP|O24431 (O24431) Calmodulin-like domain protein kinase isoenzyme
           gamma , complete
          Length = 2377

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -1

Query: 14  CSTCSYTKWTCRIIY*AYTVNCKTTSHEM*TPNFHLGTCNSACCNIDSHP 63
           CS  S  KWTCR         CK  SH++      L    S  C   SHP
Sbjct: 808 CSQVSSWKWTCRHTAIRSNSQCKDMSHQI-----ALYPTPSQVCRAASHP 674


>TC205560 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transporting
           ATPase-like protein {Arabidopsis thaliana;} , partial
           (27%)
          Length = 1356

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = -1

Query: 769 IHDSAHPKEL----WFILRKNGCNNNLRR* 794
           IHD  HPK+L    W I R+N C+NN+  *
Sbjct: 390 IHDKIHPKKLHCI*WNITRRN-CSNNINH* 304


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.372    0.163    0.676 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,838,006
Number of Sequences: 63676
Number of extensions: 773411
Number of successful extensions: 9500
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3784
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 5522
Number of HSP's gapped (non-prelim): 4482
length of query: 868
length of database: 12,639,632
effective HSP length: 106
effective length of query: 762
effective length of database: 5,889,976
effective search space: 4488161712
effective search space used: 4488161712
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 63 (28.9 bits)