BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149547.3 + phase: 0
(492 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217140 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At... 376 e-104
TC209564 weakly similar to UP|Q6Z8K1 (Q6Z8K1) Aspartyl protease-... 191 6e-49
TC217141 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At... 184 8e-47
TC219624 weakly similar to GB|AAM98276.1|22655368|AY142012 At2g1... 141 8e-34
TC211092 similar to GB|CAD39811.1|21741419|OSJN00123 OSJNBb0071D... 89 5e-32
BI424028 110 1e-24
TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast ... 100 1e-21
TC217139 weakly similar to UP|Q6K6I0 (Q6K6I0) Nucellin-like aspa... 98 7e-21
TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_4... 97 2e-20
TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chlor... 94 2e-19
CA799089 91 2e-18
TC204568 similar to UP|Q9FL43 (Q9FL43) Nucleoid DNA-binding-like... 91 2e-18
TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast... 87 2e-17
BM308018 86 4e-17
TC208837 weakly similar to UP|Q6Z8K1 (Q6Z8K1) Aspartyl protease-... 82 4e-16
TC220297 similar to UP|Q9FFC3 (Q9FFC3) Protease-like protein, pa... 81 1e-15
TC215510 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.1... 74 2e-13
TC222410 similar to UP|Q84M99 (Q84M99) At2g03200, partial (58%) 64 8e-13
TC204572 similar to UP|Q8L934 (Q8L934) Nucleoid DNA-binding-like... 69 6e-12
TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-bindi... 69 6e-12
>TC217140 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At2g17760
{Arabidopsis thaliana;} , partial (47%)
Length = 1383
Score = 376 bits (966), Expect = e-104
Identities = 182/340 (53%), Positives = 246/340 (71%), Gaps = 2/340 (0%)
Frame = +2
Query: 112 VKFMVALDTGSDLFWVPCDCTRCSATRSSAFASALASDFDLSVYNPNGSSTSKKVTCNNS 171
+ F+VALDTGSDLFW+PC+CT+C + +A ++Y+ GSSTS+ V CN+S
Sbjct: 5 LSFLVALDTGSDLFWLPCNCTKCVHGIGLSNGEKIA----FNIYDLKGSSTSQPVLCNSS 172
Query: 172 LCTHRNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQPDDNHDLVEANVIFGCGQV 231
LC + QC + + CPY V+Y+S TST+G LVEDVLHL DD + + FGCGQV
Sbjct: 173 LCELQRQCPSSDTICPYEVNYLSNGTSTTGFLVEDVLHLITDDDKTKDADTRITFGCGQV 352
Query: 232 QSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCFGRDGIGRISFGDKGSLDQ 291
Q+G+FLD AAPNGLFGLGM SVPS+L++EG T++SFSMCFG DG+GRI+FGD SL Q
Sbjct: 353 QTGAFLDGAAPNGLFGLGMSNESVPSILAKEGLTSNSFSMCFGSDGLGRITFGDNSSLVQ 532
Query: 292 DETPFNVNPSHPTYNITINQVRVGTTLIDVEFTALFDSGTSFTYLVDPTYSRLSESFHSQ 351
+TPFN+ HPTYNIT+ Q+ VG + D+EF A+FDSGTSFTYL DP Y +++ SF+S+
Sbjct: 533 GKTPFNLRALHPTYNITVTQIIVGEKVDDLEFHAIFDSGTSFTYLNDPAYKQITNSFNSE 712
Query: 352 VEDRRRPPDS--RIPFDYCYDMSPDSNTSLIPSMSLTMGGGSRFVVYDPIIIISTQSELV 409
++ +R S +PF+YCY++SP+ L S++LTM GG ++V DPI+ +S + +
Sbjct: 713 IKLQRHSTSSSNELPFEYCYELSPNQTVEL--SINLTMKGGDNYLVTDPIVTVSGEGINL 886
Query: 410 YCLAVVKSAELNIIGQNFMTGYRVVFDRGKLILGWKKSDC 449
CL V+KS +NIIGQNFMTGYR+VFDR +ILGW++S+C
Sbjct: 887 LCLGVLKSNNVNIIGQNFMTGYRIVFDRENMILGWRESNC 1006
>TC209564 weakly similar to UP|Q6Z8K1 (Q6Z8K1) Aspartyl protease-like,
partial (26%)
Length = 674
Score = 191 bits (485), Expect = 6e-49
Identities = 98/223 (43%), Positives = 139/223 (61%), Gaps = 3/223 (1%)
Frame = +3
Query: 77 SQFDAGLAFSDGNSTFRISSLGFLHYTTIELGTPGVKFMVALDTGSDLFWVPCDCTRCSA 136
SQ++ G + F ++L +LHYT I++GTP V F+VALD GSD+ WVPCDC C++
Sbjct: 3 SQYETLYPSEGGQTFFFGNALYWLHYTWIDIGTPNVSFLVALDAGSDMLWVPCDCIECAS 182
Query: 137 TRSSAFASALASDFDLSVYNPNGSSTSKKVTCNNSLCTHRNQCLGTFSNCPYMVSYVSAE 196
+ + D DL+ Y P+ S+TS+ + C + LC + C G+ CPY V Y SA
Sbjct: 183 LSAGNYN---VLDRDLNQYRPSLSNTSRHLPCGHKLCDVHSFCKGSKDPCPYEVQYASAN 353
Query: 197 TSTSGILVEDVLHLTQPDDNH---DLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKI 253
TS+SG + ED LHLT D H + V+A++I GCG+ Q+G +L A P+G+ GLG I
Sbjct: 354 TSSSGYVFEDKLHLTS-DGKHAEQNSVQASIILGCGRKQTGDYLHGAGPDGVLGLGPGNI 530
Query: 254 SVPSMLSREGFTADSFSMCFGRDGIGRISFGDKGSLDQDETPF 296
SVPS+L++ G +SFS+C + GRI FGD+G + Q TPF
Sbjct: 531 SVPSLLAKAGLIQNSFSICLDENESGRIIFGDQGHVTQHSTPF 659
>TC217141 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At2g17760
{Arabidopsis thaliana;} , partial (26%)
Length = 780
Score = 184 bits (467), Expect = 8e-47
Identities = 94/191 (49%), Positives = 130/191 (67%), Gaps = 2/191 (1%)
Frame = +1
Query: 281 ISFGDKGSLDQDETPFNVNPSHPTYNITINQVRVGTTLIDVEFTALFDSGTSFTYLVDPT 340
I+FGD SL Q +TPFN+ HPTYNIT+ Q+ VG D+EF A+FDSGTSFT+L DP
Sbjct: 1 ITFGDNSSLVQGKTPFNLRALHPTYNITVTQIIVGGNAADLEFHAIFDSGTSFTHLNDPA 180
Query: 341 YSRLSESFHSQVEDRRRPPDS--RIPFDYCYDMSPDSNTSLIPSMSLTMGGGSRFVVYDP 398
Y +++ SF+S ++ +R S +PF+YCYD+S SN ++ ++LTM GG ++V DP
Sbjct: 181 YKQITNSFNSAIKLQRYSSSSSDELPFEYCYDLS--SNKTVELPINLTMKGGDNYLVTDP 354
Query: 399 IIIISTQSELVYCLAVVKSAELNIIGQNFMTGYRVVFDRGKLILGWKKSDCKWLFFCHNY 458
I+ IS + + CL V+KS +NIIGQNFMTGYR+VFDR +ILGW++S+C+ Y
Sbjct: 355 IVTISGEGVNLLCLGVLKSNNVNIIGQNFMTGYRIVFDRENMILGWRESNCE-------Y 513
Query: 459 HSVIYCLYAAS 469
S + Y AS
Sbjct: 514 SSPLLLQYTAS 546
>TC219624 weakly similar to GB|AAM98276.1|22655368|AY142012
At2g17760/At2g17760 {Arabidopsis thaliana;} , partial
(12%)
Length = 800
Score = 141 bits (355), Expect = 8e-34
Identities = 69/139 (49%), Positives = 100/139 (71%), Gaps = 4/139 (2%)
Frame = +3
Query: 315 GTTLIDVEFTALFDSGTSFTYLVDPTYSRLSESFHSQVEDRR---RPPDSRIPFDYCYDM 371
G ++ D+EF A+FDSGTSFTY+ DP Y+RL E ++S+V+ R + PDS IPF+YCYD+
Sbjct: 9 GDSVADLEFHAIFDSGTSFTYINDPAYTRLGEMYNSKVKANRHSSQSPDSNIPFEYCYDI 188
Query: 372 SPDSNTSLIPSMSLTMGGGSRFVVYDPIIIISTQSEL-VYCLAVVKSAELNIIGQNFMTG 430
S + T +P ++LTM GG + V DPI+ + ++ E + CL + KS +NIIGQNFM G
Sbjct: 189 SINQ-TIEVPFLNLTMKGGDDYYVMDPIVQVFSEEEGDLLCLGIQKSDSVNIIGQNFMIG 365
Query: 431 YRVVFDRGKLILGWKKSDC 449
Y++VFDR + LGWK+++C
Sbjct: 366 YKIVFDRDNMNLGWKETNC 422
>TC211092 similar to GB|CAD39811.1|21741419|OSJN00123 OSJNBb0071D01.11 {Oryza
sativa (japonica cultivar-group);} , partial (8%)
Length = 619
Score = 89.0 bits (219), Expect(2) = 5e-32
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +3
Query: 370 DMSPDSNTSLIPSMSLTMGGGSRFVVYDPIIIISTQSELVYCLAVVKS 417
DMSPD+NTSLIPS+SLTMGGGS F VYDPIIIISTQSELVYCLAVVK+
Sbjct: 3 DMSPDANTSLIPSVSLTMGGGSHFAVYDPIIIISTQSELVYCLAVVKN 146
Score = 67.4 bits (163), Expect(2) = 5e-32
Identities = 30/34 (88%), Positives = 32/34 (93%)
Frame = +1
Query: 416 KSAELNIIGQNFMTGYRVVFDRGKLILGWKKSDC 449
K+AELNIIGQNFMTGYRVVFDR KL+LGWKK DC
Sbjct: 142 KTAELNIIGQNFMTGYRVVFDREKLVLGWKKFDC 243
>BI424028
Length = 421
Score = 110 bits (275), Expect = 1e-24
Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +3
Query: 139 SSAFASALASDFDLSVYNPNGSSTSKKVTCNNSLCTHRNQCLGTFSNCPYMVSYVSAETS 198
S + +++ D DL+ Y+P+ S +SK ++C++ LC + C + CPYMVSY+S TS
Sbjct: 57 SFTYGASIMQDRDLNEYSPSRSLSSKHLSCSHQLCDKGSNCKSSQQQCPYMVSYLSENTS 236
Query: 199 TSGILVEDVLHLTQPDD-NHDLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPS 257
+SG+LVED+LHL ++ V+A V+ GCG QSG +LD AP+GL GLG + SVPS
Sbjct: 237 SSGLLVEDILHLQSGGSLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPS 416
>TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast nucleoid DNA
binding protein (CND41), partial (69%)
Length = 1808
Score = 100 bits (249), Expect = 1e-21
Identities = 97/368 (26%), Positives = 148/368 (39%), Gaps = 18/368 (4%)
Frame = +3
Query: 101 HYTTIELGTPGVKFMVALDTGSDLFWVPCD-CTRCSATRSSAFASALASDFDLSVYNPNG 159
++ + LGTP + DTGSDL W C+ C R + A +++P+
Sbjct: 444 YFVVVGLGTPKRDLSLIFDTGSDLTWTQCEPCARSCYKQQDA------------IFDPSK 587
Query: 160 SSTSKKVTCNNSLCTHRNQ-------CLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQ 212
S++ +TC ++LCT + C + C Y + Y + S G + L +T
Sbjct: 588 STSYSNITCTSTLCTQLSTATGNEPGCSASTKACIYGIQYGDSSFSV-GYFSRERLSVTA 764
Query: 213 PDDNHDLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMC 272
D + N +FGCGQ G F GL GLG IS + S+ +
Sbjct: 765 TD-----IVDNFLFGCGQNNQGLF---GGSAGLIGLGRHPISFVQQTAAVYRKIFSYCLP 920
Query: 273 FGRDGIGRISFGDKGSLDQDETPFN-VNPSHPTYNITINQVRVGTTLIDVEFT------A 325
GR+SFG + TPF+ ++ Y + I + VG + V + A
Sbjct: 921 ATSSSTGRLSFGTTTTSYVKYTPFSTISRGSSFYGLDITGISVGGAKLPVSSSTFSTGGA 1100
Query: 326 LFDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRIPFDYCYDMSPDSNTSLIPSMSL 385
+ DSGT T L Y+ L +F + + I D CYD+S S IP +
Sbjct: 1101IIDSGTVITRLPPTAYTALRSAFRQGMSKYPSAGELSI-LDTCYDLSGYEVFS-IPKIDF 1274
Query: 386 TMGGGSRFVVYDPIIIISTQSELVYCLAVVKS---AELNIIGQNFMTGYRVVFDRGKLIL 442
+ GG V P I+ S CLA + +++ I G VV+D G +
Sbjct: 1275SFAGGVT-VQLPPQGILYVASAKQVCLAFAANGDDSDVTIYGNVQQKTIEVVYDVGGGRI 1451
Query: 443 GWKKSDCK 450
G+ CK
Sbjct: 1452GFGAGGCK 1475
>TC217139 weakly similar to UP|Q6K6I0 (Q6K6I0) Nucellin-like aspartic
protease-like, partial (61%)
Length = 967
Score = 98.2 bits (243), Expect = 7e-21
Identities = 82/267 (30%), Positives = 121/267 (44%), Gaps = 19/267 (7%)
Frame = +1
Query: 107 LGTPGVKFMVALDTGSDLFWVPC-DCTRCSATRSSAFASALASDFDLSVYNPNGSSTSKK 165
+GTP + + +DTGSD+ WV C C C TRS+ DL++Y+ SS+ K
Sbjct: 1 IGTPPKNYYLQVDTGSDIMWVNCIQCKEC-PTRSNL-------GMDLTLYDIKESSSGKF 156
Query: 166 VTCNNSLCTHRNQCL--GTFSN--CPYMVSYVSAETSTSGILVEDVLHLTQ--PDDNHDL 219
V C+ C N L G +N CPY+ Y +ST+G V+D++ Q D D
Sbjct: 157 VPCDQEFCKEINGGLLTGCTANISCPYLEIYGDG-SSTAGYFVKDIVLYDQVSGDLKTDS 333
Query: 220 VEANVIFGCGQVQSG--SFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCF-GRD 276
+++FGCG QSG S + A G+ G G S+ S L+ G F+ C G +
Sbjct: 334 ANGSIVFGCGARQSGDLSSSNEEALGGILGFGKANSSMISQLASSGKVKKMFAHCLNGVN 513
Query: 277 GIGRISFGDKGSLDQDETPFNVNPSHPTYNITINQVRVGTTLIDVEFT---------ALF 327
G G + G + TP + P P Y++ + V+VG + + +
Sbjct: 514 GGGIFAIGHVVQPKVNMTP--LLPDQPHYSVNMTAVQVGHAFLSLSTDTSTQGDRKGTII 687
Query: 328 DSGTSFTYLVDPTYSRLSESFHSQVED 354
DSGT+ YL + Y L SQ D
Sbjct: 688 DSGTTLAYLPEGIYEPLVYKIISQHPD 768
>TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_40, partial
(76%)
Length = 1447
Score = 96.7 bits (239), Expect = 2e-20
Identities = 98/375 (26%), Positives = 149/375 (39%), Gaps = 19/375 (5%)
Frame = +3
Query: 101 HYTTIELGTPGVKFMVALDTGSDLFWVPCD-CTRCSATRSSAFASALASDFDLSVYNPNG 159
++ + LGTP + DTGSDL W C+ C R + +++P+
Sbjct: 108 YFVVVGLGTPKRDLSLIFDTGSDLTWTQCEPCARSCYKQQDV------------IFDPSK 251
Query: 160 SSTSKKVTCNNSLCTHRNQ-------CLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQ 212
S++ +TC ++LCT + C + C Y + Y + S G + L +T
Sbjct: 252 STSYSNITCTSALCTQLSTATGNDPGCSASTKACIYGIQYGDSSFSV-GYFSRERLTVTA 428
Query: 213 PDDNHDLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMC 272
D V N +FGCGQ G F GL GLG IS + + S+ +
Sbjct: 429 TD-----VVDNFLFGCGQNNQGLF---GGSAGLIGLGRHPISFVQQTAAKYRKIFSYCLP 584
Query: 273 FGRDGIGRISFGDKGS-LDQDETPFN-VNPSHPTYNITINQVRVGTTLIDVEFT------ 324
G +SFG + TPF+ ++ Y + I + VG + V +
Sbjct: 585 STSSSTGHLSFGPAATGRYLKYTPFSTISRGSSFYGLDITAIAVGGVKLPVSSSTFSTGG 764
Query: 325 ALFDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRIPFDYCYDMSPDSNTSLIPSMS 384
A+ DSGT T L Y L +F + + I D CYD+S S IP++
Sbjct: 765 AIIDSGTVITRLPPTAYGALRSAFRQGMSKYPSAGELSI-LDTCYDLSGYKVFS-IPTIE 938
Query: 385 LTMGGGSRFVVYDPIIIISTQSELVYCLAVVKS---AELNIIGQNFMTGYRVVFDRGKLI 441
+ GG V P I+ S CLA + +++ I G VV+D G
Sbjct: 939 FSFAGGVT-VKLPPQGILFVASTKQVCLAFAANGDDSDVTIYGNVQQRTIEVVYDVGGGR 1115
Query: 442 LGWKKSDCKWLFFCH 456
+G+ CK L H
Sbjct: 1116IGFGAGGCK*LMIKH 1160
>TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
nucleoid DNA binding protein-like {Arabidopsis
thaliana;} , partial (67%)
Length = 2013
Score = 93.6 bits (231), Expect = 2e-19
Identities = 91/366 (24%), Positives = 144/366 (38%), Gaps = 17/366 (4%)
Frame = +2
Query: 101 HYTTIELGTPGVKFMVALDTGSDLFWVPC-DCTRCSATRSSAFASALASDFDLSVYNPNG 159
+++ + +G P F + LDTGSD+ W+ C C+ C +++P
Sbjct: 590 YFSRVGVGQPSKPFYMVLDTGSDVNWLQCKPCSDCYQQSD-------------PIFDPTA 730
Query: 160 SSTSKKVTCNNSLCTHRNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQPDDNHDL 219
SS+ +TC+ C C Y VSY + T G V + + N
Sbjct: 731 SSSYNPLTCDAQQCQDLEMSACRNGKCLYQVSYGDG-SFTVGEYVTETVSFGAGSVN--- 898
Query: 220 VEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCFGRDGIG 279
V GCG G F+ A GL GLG +S+ S + A SFS C G
Sbjct: 899 ---RVAIGCGHDNEGLFVGSA---GLLGLGGGPLSLTSQIK-----ATSFSYCLVDRDSG 1045
Query: 280 R---ISFGDKGSLDQDETPFNVNPSHPT-YNITINQVRVGTTLIDV-----------EFT 324
+ + F D P N T Y + + V VG ++ V
Sbjct: 1046KSSTLEFNSPRPGDSVVAPLLKNQKVNTFYYVELTGVSVGGEIVTVPPETFAVDQSGAGG 1225
Query: 325 ALFDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRIPFDYCYDMSPDSNTSLIPSMS 384
+ DSGT+ T L Y+ + ++F + + RP + FD CYD+S + +P++S
Sbjct: 1226VIVDSGTAITRLRTQAYNSVRDAFKRKTSN-LRPAEGVALFDTCYDLS-SLQSVRVPTVS 1399
Query: 385 LTMGGGSRFVVYDPIIIISTQSELVYCLAVV-KSAELNIIGQNFMTGYRVVFDRGKLILG 443
G + + +I YC A ++ ++IIG G RV FD ++G
Sbjct: 1400FHFSGDRAWALPAKNYLIPVDGAGTYCFAFAPTTSSMSIIGNVQQQGTRVSFDLANSLVG 1579
Query: 444 WKKSDC 449
+ + C
Sbjct: 1580FSPNKC 1597
>CA799089
Length = 435
Score = 90.5 bits (223), Expect = 2e-18
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +1
Query: 366 DYCYDMSPDSNTSLIPSMSLTMGGGSRFVVYDPIIIISTQSELVYCLAVVKSAELNIIGQ 425
D+ + SP+ L S++LTM GG ++V DPI+ +S + + CL V+KS +NIIGQ
Sbjct: 127 DFDFTCSPNQTVEL--SINLTMKGGDNYLVTDPIVTVSGEGINLLCLGVLKSNNVNIIGQ 300
Query: 426 NFMTGYRVVFDRGKLILGWKKSDC 449
NFMTGYR+VFDR +ILGW++S+C
Sbjct: 301 NFMTGYRIVFDRENMILGWRESNC 372
>TC204568 similar to UP|Q9FL43 (Q9FL43) Nucleoid DNA-binding-like protein,
partial (88%)
Length = 1307
Score = 90.5 bits (223), Expect = 2e-18
Identities = 96/358 (26%), Positives = 155/358 (42%), Gaps = 27/358 (7%)
Frame = +2
Query: 106 ELGTPGVKFMVALDTGSDLFWVPCDCTRCSATRSSAFASALASDFDLSVYNPNGSSTSKK 165
++G+P ++A+DT +D W+PC T C S+ FA P S+T K
Sbjct: 326 KIGSPPQTLLLAMDTSNDAAWIPC--TACDGCTSTLFA-------------PEKSTTFKN 460
Query: 166 VTCNNSLCTH-RNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLHL-TQPDDNHDLVEAN 223
V+C + C N GT S C + ++Y S+ + + +V+D + L T P ++
Sbjct: 461 VSCGSPQCNQVPNPSCGT-SACTFNLTYGSSSIAAN--VVQDTVTLATDPIPDYT----- 616
Query: 224 VIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCF----GRDGIG 279
FGC +G+ A P GL GLG +S+ S + +FS C + G
Sbjct: 617 --FGCVAKTTGAS---APPQGLLGLGRGPLSLLSQT--QNLYQSTFSYCLPSFKSLNFSG 775
Query: 280 RISFGDKGS-LDQDETPFNVNPSHPT-YNITINQVRVGTTLIDVEFTAL----------- 326
+ G + TP NP + Y + + +RVG ++D+ AL
Sbjct: 776 SLRLGPVAQPIRIKYTPLLKNPRRSSLYYVNLVAIRVGRKVVDIPPEALAFNAATGAGTV 955
Query: 327 FDSGTSFTYLVDPTYSRLSESFHSQVEDRRR---PPDSRIPFDYCYDMSPDSNTSLIPSM 383
FDSGT FT LV P Y+ + + F +V + S FD CY + + P++
Sbjct: 956 FDSGTVFTRLVAPAYTAVRDEFQRRVAIAAKANLTVTSLGGFDTCYTV-----PIVAPTI 1120
Query: 384 SLTMGGGSRFVVYDPIIIISTQSELVYCLAVVKSAE-----LNIIGQNFMTGYRVVFD 436
+ G + + D I+I ST CLA+ + + LN+I +RV++D
Sbjct: 1121TFMFSGMNVTLPEDNILIHSTAGSTT-CLAMASAPDNVNSVLNVIANMQQQNHRVLYD 1291
>TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast nucleoid
DNA binding protein precursor, partial (52%)
Length = 1348
Score = 86.7 bits (213), Expect = 2e-17
Identities = 87/327 (26%), Positives = 136/327 (40%), Gaps = 14/327 (4%)
Frame = +1
Query: 101 HYTTIELGTPGVKFMVALDTGSDLFWVPCDCTRCSATRSSAFASALASDFDLSVYNPNGS 160
+Y + LGTP + DTGS L W C+ S + +++P+ S
Sbjct: 439 YYVVVGLGTPKRDLSLTFDTGSYLTWTQCEPCAGSCYKQQD-----------PIFDPSKS 585
Query: 161 STSKKVTCNNSLCTHRNQC---LGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQPDDNH 217
S+ + C +SLCT T ++C Y V Y + + G L ++ L +T D H
Sbjct: 586 SSYTNIKCTSSLCTQFRSAGCSSSTDASCIYDVKY-GDNSISRGFLSQERLTITATDIVH 762
Query: 218 DLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCFGRDG 277
D +FGCGQ G F A GL GL IS S S+ +
Sbjct: 763 DF-----LFGCGQDNEGLFRGTA---GLMGLSRHPISFVQQTSSIYNKIFSYCLPSTPSS 918
Query: 278 IGRISFGDKGSLDQD--ETPFN-VNPSHPTYNITINQVRVGTTLIDVEFTALF------- 327
+G ++FG + + + TPF+ ++ + Y + I + VG T + ++ F
Sbjct: 919 LGHLTFGASAATNANLKYTPFSTISGENSFYGLDIVGISVGGTKLPAVSSSTFSAGGSII 1098
Query: 328 DSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRIPFDYCYDMSPDSNTSLIPSMSLTM 387
DSGT T L Y+ L +F + +R+ D CYD S S +P +
Sbjct: 1099DSGTVITRLPPTAYAALRSAFRQFMMKYPVAYGTRL-LDTCYDFSGYKEIS-VPRIDFEF 1272
Query: 388 GGGSRFVVYDPII-IISTQSELVYCLA 413
GG + V P++ I+ +S CLA
Sbjct: 1273AGGVK--VELPLVGILYGESAQQLCLA 1347
>BM308018
Length = 432
Score = 85.9 bits (211), Expect = 4e-17
Identities = 38/44 (86%), Positives = 42/44 (95%)
Frame = +3
Query: 105 IELGTPGVKFMVALDTGSDLFWVPCDCTRCSATRSSAFASALAS 148
+++GTPGVKFMVALDTGSDLFWVPCDCTRC+AT SSAFASA AS
Sbjct: 3 VQIGTPGVKFMVALDTGSDLFWVPCDCTRCAATDSSAFASAFAS 134
>TC208837 weakly similar to UP|Q6Z8K1 (Q6Z8K1) Aspartyl protease-like,
partial (6%)
Length = 881
Score = 82.4 bits (202), Expect = 4e-16
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Frame = +2
Query: 305 YNITINQVRVGTTLI-DVEFTALFDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRI 363
Y + + VG+ + + F AL DSG+SFT+L + Y ++ F QV R S
Sbjct: 41 YMVGVESFCVGSLCLKETRFQALIDSGSSFTFLPNEVYQKVVTEFDKQVNASRIVLQSS- 217
Query: 364 PFDYCYDMSPDSNTSLIPSMSLTMGGGSRFVVYDPIIIISTQSE---LVYCLAVVKSAE- 419
++YCY+ S + IP + L F++ +PI E ++CL V SA+
Sbjct: 218 -WEYCYNASSQELVN-IPPLKLAFSRNQTFLIQNPIFYDPASQEQEYTIFCLPVSPSADD 391
Query: 420 LNIIGQNFMTGYRVVFDRGKLILGWKKSDCK 450
IGQNF+ GYR+VFDR L GW + +C+
Sbjct: 392 YAAIGQNFLMGYRLVFDRENLRFGWSRWNCQ 484
>TC220297 similar to UP|Q9FFC3 (Q9FFC3) Protease-like protein, partial (44%)
Length = 1062
Score = 80.9 bits (198), Expect = 1e-15
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 14/242 (5%)
Frame = +2
Query: 168 CNNSLCTHRNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQPDDNHDLVE--ANVI 225
C + + T C + C Y Y + TSG V D++H + A+V+
Sbjct: 14 CRSGVQTSDASCSSQNNQCTYTFQYGDG-SGTSGYYVSDLMHFASIFEGTLTTNSSASVV 190
Query: 226 FGCGQVQSGSFL-DVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCFGRD--GIGRIS 282
FGC +Q+G A +G+FG G + +SV S LS +G FS C D G G +
Sbjct: 191 FGCSILQTGDLTKSERAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNSGGGVLV 370
Query: 283 FGDKGSLDQDETPFNVNPSHPTYNITINQVRVGTTLIDVEFTA---------LFDSGTSF 333
G+ + +P + PS P YN+ + + V ++ + + + DSGT+
Sbjct: 371 LGEIVEPNIVYSP--LVPSQPHYNLNLQSISVNFFIVRIAPSVFATSNNRGTIVDSGTTL 544
Query: 334 TYLVDPTYSRLSESFHSQVEDRRRPPDSRIPFDYCYDMSPDSNTSLIPSMSLTMGGGSRF 393
YL + Y+ + + + R SR + CY ++ SN + P +SL GG+
Sbjct: 545 AYLAEEAYNPFVIAIAAVIPQSVRSVLSR--GNQCYLITTSSNVDIFPQVSLNFAGGASL 718
Query: 394 VV 395
V+
Sbjct: 719 VL 724
>TC215510 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.13
{Arabidopsis thaliana;} , partial (68%)
Length = 1381
Score = 73.6 bits (179), Expect = 2e-13
Identities = 103/383 (26%), Positives = 152/383 (38%), Gaps = 24/383 (6%)
Frame = +3
Query: 91 TFRISSLGFLHYTTIELGTPGVKFMVALDTGSDLFWVPCD-CTRCSATRSSAFASALASD 149
TF I + + ++LGTPG + LDT +D +VPC CT CS T S AS
Sbjct: 39 TFNIGN----YVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGP 206
Query: 150 FDLSVYNPNGSSTSKKVTCNNSLCTHRNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLH 209
D SV + ++C GT C + SY A +S S LV+D L
Sbjct: 207 LDCSVPQ---CGQVRGLSC---------PATGT-GACSFNQSY--AGSSFSATLVQDSLR 341
Query: 210 LTQPDDNHDLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFT-ADS 268
L V N FGC +G+ + GL GLG + S+LS+ G +
Sbjct: 342 LATD------VIPNYSFGCVNAITGASVPA---QGLLGLGRGPL---SLLSQSGSNYSGI 485
Query: 269 FSMCF----GRDGIGRISFGDKGSLDQ-DETPFNVNPSHPT-YNITINQVRVGTTLI--- 319
FS C G + G G TP +P P+ Y + + VG L+
Sbjct: 486 FSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRSPHRPSLYYVNFTGISVGRVLVPFP 665
Query: 320 --------DVEFTALFDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRIPFDYCYDM 371
+ + DSGT T V+P Y+ + E F QV S FD C+
Sbjct: 666 SEYLGFNPNTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTTF--TSIGAFDTCFVK 839
Query: 372 SPDSNTSLIPSMSLTMGGGSRFVVYDPIIIISTQSELVYCLAVVKSAE-----LNIIGQN 426
+ + +L P ++L G + + +I S+ L CLA+ + + LN+I
Sbjct: 840 TYE---TLAPPITLHFEGLDLKLPLENSLIHSSAGSLA-CLAMAAAPDNVNSVLNVIANF 1007
Query: 427 FMTGYRVVFDRGKLILGWKKSDC 449
R++FD +G + C
Sbjct: 1008QQQNLRILFDTVNNKVGIAREVC 1076
>TC222410 similar to UP|Q84M99 (Q84M99) At2g03200, partial (58%)
Length = 1087
Score = 63.9 bits (154), Expect(2) = 8e-13
Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 19/262 (7%)
Frame = +1
Query: 223 NVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCFGRDGIGRIS 282
N+ FGCG+ G + A+ GL GLG +S+ S L F+ M ++ I +
Sbjct: 289 NIGFGCGEDNEGDGFEQAS--GLVGLGRGPLSLVSQLKEPRFSYCLTPMDDTKESI--LL 456
Query: 283 FGDKGSLDQDE----TPFNVNPSHPT-YNITINQVRVGTTLIDVEFTA-----------L 326
G G + + TP NP P+ Y +++ + VG T + +E + +
Sbjct: 457 LGSLGKVKDAKEVVTTPLLKNPLQPSFYYLSLEGISVGDTRLSIEKSTFEVGDDGNGGVI 636
Query: 327 FDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPD--SRIPFDYCYDMSPDSNTSLIPSMS 384
DSGT+ TY+ + L + F SQ + P D S D C+ + S IP +
Sbjct: 637 IDSGTTITYIEQKAFEALKKEFISQT---KLPLDKTSSTGLDLCFSLPSGSTQVEIPKIV 807
Query: 385 LTMGGGSRFVVYDPIIIISTQSELVYCLAVVKSAELNIIGQNFMTGYRVVFDRGKLILGW 444
GG + + +I + V CLA+ S+ ++I G V D K + +
Sbjct: 808 FHFKGGDLELPAEN-YMIGDSNLGVACLAMGASSGMSIFGNVQQQNILVNHDLEKETISF 984
Query: 445 KKSDCKWLFFCH-NYHSVIYCL 465
+ C L C +Y ++ CL
Sbjct: 985 VPTSCDQL*VCDIHYMFLLLCL 1050
Score = 27.7 bits (60), Expect(2) = 8e-13
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +3
Query: 154 VYNPNGSSTSKKVTCNNSLCT--HRNQCLGTFSNCPYMVSY 192
+++P SS+ KV+C +SLC+ + C C Y+ SY
Sbjct: 93 IFDPKKSSSFSKVSCGSSLCSAVPSSTC---SDGCEYVYSY 206
>TC204572 similar to UP|Q8L934 (Q8L934) Nucleoid DNA-binding-like protein,
partial (61%)
Length = 1118
Score = 68.6 bits (166), Expect = 6e-12
Identities = 90/336 (26%), Positives = 142/336 (41%), Gaps = 33/336 (9%)
Frame = +3
Query: 159 GSSTSKKV---TCNNSLCTHRNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQPDD 215
G+S K+V TC+ S C N Y S V+A LV+D + L
Sbjct: 3 GASQCKQVRNPTCDGSACAF---------NFTYGTSSVAAS------LVQDTVTLAT--- 128
Query: 216 NHDLVEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCFGR 275
D V A FGC Q +GS + P GL GLG +S+ + + +FS C
Sbjct: 129 --DPVPAYA-FGCIQKVTGSSVP---PQGLLGLGRGPLSL--LAQTQKLYQSTFSYCL-- 278
Query: 276 DGIGRISFGDK---GSLDQDE----TPFNVNPSHPT-YNITINQVRVGTTLIDVEFTAL- 326
++F G + Q + TP NP + Y + + +RVG ++D+ AL
Sbjct: 279 PSFKTLNFSGSLRLGPVAQPKRIKFTPLLKNPRRSSLYYVNLVAIRVGRRIVDIPPEALA 458
Query: 327 ----------FDSGTSFTYLVDPTYSRLSESFHSQVEDRRRPPDSRI-PFDYCYDMSPDS 375
FDSGT FT LV+P Y+ + F ++ ++ + + FD CY +
Sbjct: 459 FNANTGAGTVFDSGTVFTRLVEPAYNAVRNEFRRRIAVHKKLTVTSLGGFDTCY-----T 623
Query: 376 NTSLIPSMSLTMGGGSRFVVYDPIIIISTQSELVYCLAVVKSAE-----LNIIGQNFMTG 430
+ P+++ G + + D I+I ST V CLA+ + + LN+I
Sbjct: 624 APIVAPTITFMFSGMNVTLPPDNILIHSTAGS-VTCLAMAPAPDNVNSVLNVIANMQQQN 800
Query: 431 YRVVFDRGKLILGWKKSDCK-WLFFC----HNYHSV 461
+RV+FD LG + C ++ C N+H +
Sbjct: 801 HRVLFDVPNSRLGVARELCT*YIIICDS*VKNFHDL 908
>TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
cnd41-like protein, partial (54%)
Length = 985
Score = 68.6 bits (166), Expect = 6e-12
Identities = 64/264 (24%), Positives = 100/264 (37%), Gaps = 16/264 (6%)
Frame = +1
Query: 101 HYTTIELGTPGVKFMVALDTGSDLFWVPC-DCTRCSATRSSAFASALASDFDLSVYNPNG 159
++ + +G P + V LDTGSD+ W+ C C+ C +++P
Sbjct: 235 YFLRVGIGKPPSQAYVVLDTGSDVSWIQCAPCSECYQQSD-------------PIFDPIS 375
Query: 160 SSTSKKVTCNNSLCTHRNQCLGTFSNCPYMVSYVSAETSTSGILVEDVLHLTQPDDNHDL 219
S++ + C+ C + C Y VSY + E V T +
Sbjct: 376 SNSYSPIRCDAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGTAAVE---- 543
Query: 220 VEANVIFGCGQVQSGSFLDVAAPNGLFGLGMEKISVPSMLSREGFTADSFSMCF---GRD 276
NV GCG G F+ A GL GLG K+S P+ ++ A SFS C D
Sbjct: 544 ---NVAIGCGHNNEGLFVGAA---GLLGLGGGKLSFPAQVN-----ATSFSYCLVNRDSD 690
Query: 277 GIGRISFGDKGSLDQDETPFNVNPSHPT-YNITINQVRVGTTLIDVEFT----------- 324
+ + F + P NP T Y + + + VG + + +
Sbjct: 691 AVSTLEFNSPLPRNVVTAPLRRNPELDTFYYLGLKGISVGGEALPIPESIFEVDAIGGGG 870
Query: 325 ALFDSGTSFTYLVDPTYSRLSESF 348
+ DSGT+ T L Y L ++F
Sbjct: 871 IIIDSGTAVTRLRSEVYDALRDAF 942
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,532,823
Number of Sequences: 63676
Number of extensions: 368885
Number of successful extensions: 2560
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 2503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2520
length of query: 492
length of database: 12,639,632
effective HSP length: 101
effective length of query: 391
effective length of database: 6,208,356
effective search space: 2427467196
effective search space used: 2427467196
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149547.3