BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149496.5 + phase: 0
(1716 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 1084 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 1074 0.0
TC232995 229 1e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 227 4e-59
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 227 4e-59
TC213445 123 2e-48
BM143109 169 1e-41
AI959950 166 1e-40
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 159 1e-38
CO983516 155 2e-37
NP004897 gag-protease polyprotein 152 9e-37
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 147 5e-35
AI855982 146 9e-35
AI966222 117 4e-32
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 131 3e-30
CO982036 127 6e-29
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 124 4e-28
BI321712 122 1e-27
BG508993 120 5e-27
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 120 7e-27
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 1084 bits (2804), Expect = 0.0
Identities = 632/1663 (38%), Positives = 919/1663 (55%), Gaps = 22/1663 (1%)
Frame = +1
Query: 38 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 92
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 49 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228
Query: 93 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 152
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408
Query: 153 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 212
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 213 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDS 272
+ V++L+ SL+ E+ L++ + KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 273 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGGYKNSKKEDQKG-------CF 316
DE + + +L + L + ++QK + R G K K+ D K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 909
Query: 317 NCKKPGHFIADCPDLQKEKSKSKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEA 376
C+ GH IA+CP K+ +K L D +SE SD +
Sbjct: 910 GCEGYGHIIAECPTHLKKH-------------------RKGLSVCQSDTESEQESDSDR- 1029
Query: 377 EDDTKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELT 436
D A G+ T +ED ++ S+I EL S ++L E +
Sbjct: 1030 --DVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQEA 1167
Query: 437 DLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKILCQKLQEKCDKGSGNKH 496
LK+ DL ++++ E+ + E+ N +K+L NK
Sbjct: 1168 QLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKML-------------NKG 1308
Query: 497 EIALDDFIMAGIDRSKVASMIYSTYKNNGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFV 556
LD+ ++ G + N +G+G++ + + ++ + FV
Sbjct: 1309 SDTLDEVLLLGKNAG------------NQRGLGFNPKSAGRTTM------------TEFV 1416
Query: 557 PEGTNAVTAVQSKPETSGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIR 616
P +K T + ++ S+ ++ K + + +P +L
Sbjct: 1417 P----------AKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHG 1566
Query: 617 PESKIPKQKDQKNKAATASDKTIPKGVKPEVLNDQKPLSIHPKVCIRAREKQRSWYLDSG 676
+ + + K +PK K +S+ +RA K+ WYLDSG
Sbjct: 1567 HPHHGTQSSNSRKKMMW-----VPK---------HKAVSLVVHTSLRASAKE-DWYLDSG 1701
Query: 677 CSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGLKHNL 735
CSRHMTG K L + V FG GKIIG G + + + S+N V LV GL NL
Sbjct: 1702 CSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANL 1881
Query: 736 LSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLADQKVVCLLSMN 795
+SISQ CD G++V F+K+ C + N+ + + KG R ++ + CL S
Sbjct: 1882 ISISQLCDEGFNVNFTKSECLVTNEKSE-VLMKGSRSKDNCYLWTPQETSYSSTCLSSKE 2058
Query: 796 DKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSTFKSKDIV 855
D+ +WH+R GH + R + KI V+G+PN+ +CG CQ GK VK + +
Sbjct: 2059 DEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQ 2238
Query: 856 STSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQ 915
+TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+ K EVF +
Sbjct: 2239 TTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLR 2418
Query: 916 IQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEM 975
+Q EK+ I ++RSDHG EFEN F FC GI HEFS+ TPQQNG+VERKNRTLQE
Sbjct: 2419 LQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 2598
Query: 976 ARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTC 1035
AR M+H L + WAEA+NT+CYI NR+ +R T YE++KGR+P++ +FH FG C
Sbjct: 2599 ARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPC 2778
Query: 1036 YILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKFDDREPGNKTPE 1095
YIL ++ +K D K+ GIFLGYS S+AYRV+NS T V ESI+V DD P K
Sbjct: 2779 YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDV 2958
Query: 1096 QSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEAETSPVEQNENASE 1155
+ + + DA++S + +++ S+S + S + Q + S
Sbjct: 2959 EEDVRTSGDNVADAAKSGENAEN-------------------SDSATDESNINQPDKRSS 3081
Query: 1156 DVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEA 1215
+ + HP+ELIIG + TRS + S +S IEPK V+EA
Sbjct: 3082 T-------------RIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEA 3222
Query: 1216 LSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVA 1275
L+D+ WI AMQEEL QF+RN+VW+L+P+P N+IGTKW+F+NK NE+G +TRNKARLVA
Sbjct: 3223 LTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVA 3402
Query: 1276 QGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQ 1335
QGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDVKSAFLNG + EEVYV+Q
Sbjct: 3403 QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQ 3582
Query: 1336 PPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKD 1395
P GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D TLF K ++
Sbjct: 3583 PKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAEN 3762
Query: 1396 ILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQT 1455
++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +++ Q+
Sbjct: 3763 LMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQS 3942
Query: 1456 KYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDIL 1515
+Y K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLYLTASRPDI
Sbjct: 3943 RYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDIT 4122
Query: 1516 FSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIE 1575
++V +CAR+Q++P+ SHLT VKRI +Y+ GT++ G++Y + L+G+CDAD+AG +
Sbjct: 4123 YAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADD 4302
Query: 1576 RKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINAN 1635
RKSTSG C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK L++Y + +
Sbjct: 4303 RKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQD 4482
Query: 1636 SIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
+ +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++
Sbjct: 4483 VMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVI 4611
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 1074 bits (2778), Expect = 0.0
Identities = 633/1664 (38%), Positives = 918/1664 (55%), Gaps = 23/1664 (1%)
Frame = +1
Query: 38 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 92
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228
Query: 93 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 152
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 153 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 212
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 213 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDS 272
+ V++L+ SL+ E+ L++ + KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 273 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGGYKNSKKEDQKG-------CF 316
DE + + +L + L + R+QK + R G + KK D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDEKPSHSKGIQCH 909
Query: 317 NCKKPGHFIADCPDLQKEKSKSKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEA 376
C+ GH A+CP K++ K S S +D +SE SD +
Sbjct: 910 GCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESDSDR- 1032
Query: 377 EDDTKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELT 436
D A G + +ED ++ S+I EL S +EL E +
Sbjct: 1033 --DVNALTGRFES------------AEDSSDTDSEITFDELAISYRELCIKSEKILQQEA 1170
Query: 437 DLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKILCQKLQEKCDKGSGNKH 496
LK+ +L ++++ E+ + E+ N +K+L NK
Sbjct: 1171 QLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKML-------------NKG 1311
Query: 497 EIALDDFIMAGIDRSKVASMIYSTYKNNGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFV 556
LD+ + G + N +G+G++ + + ++ + FV
Sbjct: 1312 SDMLDEVLQLGKN------------VGNQRGLGFNHKSAGRTTM------------TEFV 1419
Query: 557 P-EGTNAVTAVQSKPETSGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLI 615
P + + T Q + G+Q K KS K + + I
Sbjct: 1420 PAKNSTGATMSQHRSRHHGTQQK--------------KSKRKKWRCHYCGK-----YGHI 1542
Query: 616 RPESKIPKQKDQKNKAATASDKTIPKGVKPEVLNDQKPLSIHPKVCIRAREKQRSWYLDS 675
+P +++S + + K ++++ L +H + A+E WYLDS
Sbjct: 1543 KPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVS----LVVHTSLRASAKE---DWYLDS 1701
Query: 676 GCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGLKHN 734
GCSRHMTG K + + V FG GKI G G + + + S+N V LV GL N
Sbjct: 1702 GCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTAN 1881
Query: 735 LLSISQFCDNGYDVMFSKTNCTLVNKNDKSITFKGKRVENVYKINFSDLADQKVVCLLSM 794
L+SISQ CD G++V F+K+ C + N+ + + KG R ++ + CL S
Sbjct: 1882 LISISQLCDEGFNVNFTKSECLVTNEKSE-VLMKGSRSKDNCYLWTPQETSYSSTCLFSK 2058
Query: 795 NDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSTFKSKDI 854
D+ +WH+R GH + R + KI V+G+PN+ +CG CQ GK VK + +
Sbjct: 2059 EDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQH 2238
Query: 855 VSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCT 914
+TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+ K EVF
Sbjct: 2239 QTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSL 2418
Query: 915 QIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQE 974
++Q EK+ I ++RSDHG EFEN F FC GI HEFS+ TPQQNG+VERKNRTLQE
Sbjct: 2419 RLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQE 2598
Query: 975 MARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCT 1034
AR M+H L + WAEA+NT+CYI NR+ +R T YE++KGR+P + +FH FG
Sbjct: 2599 AARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSP 2778
Query: 1035 CYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVEESIHVKFDDREPGNKTP 1094
CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V ESI+V DD P K
Sbjct: 2779 CYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKD 2958
Query: 1095 EQSESNAGTTDSEDASESDQPSDSEKHSEVESRPEAEITPEAESNSEAETSPVEQNENAS 1154
+ + + D +D+ K +E N+E N +++
Sbjct: 2959 VEEDVR---------TSGDNVADTAKSAE---------------NAE--------NSDSA 3042
Query: 1155 EDVQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEE 1214
D + Q +P + + HP+ELIIG + TRS + S +S IEPK V+E
Sbjct: 3043 TDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKE 3222
Query: 1215 ALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLV 1274
AL+D+ WI AMQEEL QF+RN+VW+L+P+P N+IGTKW+F+NK NE+G +TRNKARLV
Sbjct: 3223 ALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLV 3402
Query: 1275 AQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVK 1334
AQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDVKSAFLNG + EE YV+
Sbjct: 3403 AQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVE 3582
Query: 1335 QPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKK 1394
QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D TLF K +
Sbjct: 3583 QPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAE 3762
Query: 1395 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1454
+++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +++ Q
Sbjct: 3763 NLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQ 3942
Query: 1455 TKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDI 1514
+KY K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLYLTASRPDI
Sbjct: 3943 SKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDI 4122
Query: 1515 LFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRI 1574
++V +CAR+Q++P+ SHL VKRI +Y+ GT++ G++Y D L+G+CDAD+AG
Sbjct: 4123 TYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSAD 4302
Query: 1575 ERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINA 1634
+RKSTSG C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK L++Y +
Sbjct: 4303 DRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQ 4482
Query: 1635 NSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1678
+ + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++
Sbjct: 4483 DVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVI 4614
>TC232995
Length = 1009
Score = 229 bits (583), Expect = 1e-59
Identities = 109/173 (63%), Positives = 139/173 (80%)
Frame = +2
Query: 1333 VKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTL 1392
V+QPPGFE P+HVYKL+K+LYGLKQAPRAWY+RLSNFL++ +F RG+VDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1393 KKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYV 1452
DIL+VQIYVDDIIFGSTN SLCKEFS MQ EFEMSMMGELK+FLG+QI Q++ G+++
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1453 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1505
+Q+KY KEL+K+F ++ K M+TPM C L K+++G +D K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 227 bits (578), Expect = 4e-59
Identities = 123/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%)
Frame = +3
Query: 1338 GFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKD-I 1396
GFED + P HV+ + L L +F + D + T + + LKK+
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*V------HF*FQMDSPE-E*RTPHYSERLKKETF 488
Query: 1397 LIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTK 1456
LI+ IYVDDIIFG+T+ +CKEF +LM+D FE SM GELKF LG+QI Q G+++HQ K
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 1457 YTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1516
YTK LK+F++++ K M TPMH + + K++ G K Y GMI SL YLT+SRPDI+F
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 1517 SVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIER 1576
VCLCARFQS P+ SH+TAVKRI RYL GTTN L ++K ++ L+G+CD +AGD++ER
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028
Query: 1577 KSTSGN 1582
KSTS N
Sbjct: 1029 KSTSRN 1046
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 227 bits (578), Expect = 4e-59
Identities = 108/153 (70%), Positives = 130/153 (84%)
Frame = -3
Query: 1223 LAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQE 1282
+AMQEELNQF+RN+VW L+ KP +IGTKWVFRNKL+E G + RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1283 GIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDI 1342
GIDY ET+APVARLE IR+LL+Y LYQMDVKSAFLNG+I+EEVYV+QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1343 KHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1375
P HVYKL+K+LYGLKQAPRAWY+R+SNFL++
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC213445
Length = 705
Score = 123 bits (308), Expect(2) = 2e-48
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = +1
Query: 1573 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI 1632
+ +R+STS C F+G L+SW SK+Q ++ +STAEAEYISA S Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1633 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1670
+ IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 90.1 bits (222), Expect(2) = 2e-48
Identities = 40/68 (58%), Positives = 52/68 (75%)
Frame = +2
Query: 1500 MIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1559
MI S LYL+ SRP I+FSVC+C R+Q++P+ESHL+ +KRI RYL G NLGL Y K+ Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1560 KLIGFCDA 1567
L+G+ DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 169 bits (428), Expect = 1e-41
Identities = 83/137 (60%), Positives = 107/137 (77%)
Frame = +1
Query: 1335 QPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKK 1394
QPP ++ + P+HV+KLKK LYGLKQA RAWY+ LS FL+ F +G+VDT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1395 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1454
DIL+VQIYVDDIIFGSTN SLCK+FS+ MQ+EFEMSMM EL FFLG+QI Q+K G+++ Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1455 TKYTKELLKKFKLEDCK 1471
+KY K+L+ +F +E+ K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>AI959950
Length = 466
Score = 166 bits (419), Expect = 1e-40
Identities = 83/130 (63%), Positives = 104/130 (79%)
Frame = -1
Query: 1224 AMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEG 1283
AMQEEL+QFQ+N+V L+ P +K ++G KW+F NKL+E G+V R KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 1284 IDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIK 1343
IDY +TFA VARLE I +LLS+A + LYQMDVKSAFLNG+I++EVYV+QPPGFE+
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 1344 HPDHVYKLKK 1353
HV+KL K
Sbjct: 31 LHQHVFKLNK 2
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 159 bits (401), Expect = 1e-38
Identities = 75/111 (67%), Positives = 91/111 (81%)
Frame = +3
Query: 1208 EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVT 1267
EPK ++EA+ DD WI+ MQEELNQF+RN+VW L+ KP +IGTKWVFRNKL+E G +
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1268 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1318
RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+LL+YA LYQMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 155 bits (391), Expect = 2e-37
Identities = 76/120 (63%), Positives = 92/120 (76%)
Frame = +2
Query: 1290 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVY 1349
F PVARLE+IRLLL A LYQMDVKSAFLNG + EEVYV+QP GF D HPDHVY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1350 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILIVQIYVDDIIFG 1409
+LKK+LYGLKQAPRAWY+RL+ L + + +G +D TLF K ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>NP004897 gag-protease polyprotein
Length = 1923
Score = 152 bits (385), Expect = 9e-37
Identities = 165/700 (23%), Positives = 281/700 (39%), Gaps = 22/700 (3%)
Frame = +1
Query: 38 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 92
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228
Query: 93 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 152
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 153 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 212
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 213 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKTSKSSKAYKASESEEESPDRDS 272
L V++L+ SL+ E+ L++ + KKSK++A S E EE+ D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 273 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGGYKNSKKEDQK-------GCF 316
DE + + +L + L + R+QK + R G + K+ D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCH 909
Query: 317 NCKKPGHFIADCPDLQKEKSKSKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEA 376
C+ GH A+CP + +KQ K + +D +SE SD +
Sbjct: 910 GCEGYGHIKAECP------------------THLKKQRKGLSVCRSDDTESEQESDSDR- 1032
Query: 377 EDDTKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELT 436
D A G +ED ++ S+I EL S +EL E +
Sbjct: 1033--DVNALTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEA 1170
Query: 437 DLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKILCQKLQEKCDKGSGNKH 496
LK+ +L ++++ E+ + E+ N +K+L NK
Sbjct: 1171QLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKML-------------NKG 1311
Query: 497 EIALDDFIMAGIDRSKVASMIYSTYKNNGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFV 556
LD+ + G + N +G+G++ + + ++ + FV
Sbjct: 1312SDMLDEVLQLGKN------------VGNQRGLGFNHKSAGRITM------------TEFV 1419
Query: 557 P-EGTNAVTAVQSKPETSGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLI 615
P + + T Q + G+Q K KS K + + I
Sbjct: 1420PAKISTGATMSQHRSRHHGTQQK--------------KSKRKKWRCHYCGK-----YGHI 1542
Query: 616 RPESKIPKQKDQKNKAATASDKTIPKGVKPEVLNDQKPLSIHPKVCIRAREKQRSWYLDS 675
+P +++S + + K ++++ L +H + A+E WYLDS
Sbjct: 1543KPFCYHLHGHPHHGTQSSSSRRKMMWVPKHKIVS----LVVHTSLRASAKE---DWYLDS 1701
Query: 676 GCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI 715
GCSRHMTG K + + V FG GKI G G +
Sbjct: 1702GCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKL 1821
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 147 bits (370), Expect = 5e-35
Identities = 80/189 (42%), Positives = 118/189 (62%), Gaps = 4/189 (2%)
Frame = +1
Query: 1492 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1551
VD +R +IGSL YL SRP+I F+V L +RF PR SH+ A KR+ R +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1552 LY---RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1608
L+ KS L+G+ D+D+ D + KST G + ++ +SK+Q IA+ST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1609 EYISAASCCTQLLWMKHQLEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHH 1667
EY++A+ Q +WM + LE+ ++ + + DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1668 FIRDYVQKG 1676
+IRD V KG
Sbjct: 547 YIRDQVSKG 573
>AI855982
Length = 484
Score = 146 bits (368), Expect = 9e-35
Identities = 77/161 (47%), Positives = 104/161 (63%)
Frame = +2
Query: 1176 PEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRN 1235
P + IIG TR + + + +S+IEPK ++EA+ DD WI+AMQEELNQF+RN
Sbjct: 2 PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181
Query: 1236 DVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1295
+VW L+ KP +I TKWVFRNKL+E + +KARLVA+GY+Q +G+DY T+A +AR
Sbjct: 182 NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361
Query: 1296 LEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQP 1336
L I + LSY LY SA L+G++ EVYV QP
Sbjct: 362 L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>AI966222
Length = 430
Score = 117 bits (294), Expect(2) = 4e-32
Identities = 52/88 (59%), Positives = 70/88 (79%)
Frame = +1
Query: 974 EMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGC 1033
EMART +++N KHF AE +N CY+QN+IYIRP+L++T YEL+KGR+PNISYF+ F C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 1034 TCYILNTKDYLKKFDAKAQRGIFLGYSE 1061
C+I+NTKD L K D+K+ GIF+ YS+
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYSK 264
Score = 40.8 bits (94), Expect(2) = 4e-32
Identities = 19/39 (48%), Positives = 26/39 (65%)
Frame = +2
Query: 1063 SKAYRVYNSETHCVEESIHVKFDDREPGNKTPEQSESNA 1101
SKA+RVYNS T +EE+IH++F +P + E ES A
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFA 385
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 131 bits (329), Expect = 3e-30
Identities = 65/131 (49%), Positives = 92/131 (69%)
Frame = -2
Query: 1241 IPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 1300
+P P K +G +WV+ K+ GEV R KARLVA+GY+Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1301 LLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQ 1360
L L+ A L+Q+D+K+AFL+G +EE++Y++QPPGF V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1361 APRAWYDRLSN 1371
+PRAW+ + S+
Sbjct: 46 SPRAWFGKFSH 14
>CO982036
Length = 674
Score = 127 bits (318), Expect = 6e-29
Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 4/207 (1%)
Frame = -2
Query: 1401 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1460
+YVD II GS+ +L + + + F + ++G+L +F+ I++ + ++ +T +
Sbjct: 640 VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1461 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1520
+K + + + +++PM TC LSK D+ YR ++G+L Y T RP+I F+V
Sbjct: 463 FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1521 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1577
+F S+P +SH T VKRI RYLKG+ + GL + ++ + + GFCDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1578 STSGNCQFLGENLIS-WASKRQATIAM 1603
STSG FLG NLIS W K+Q A+
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQVAFAV 26
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 124 bits (311), Expect = 4e-28
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +3
Query: 1203 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNE 1262
L S+ P T+ EAL GW AM +E+ + N W+L+P P K +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1263 KGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1322
G+V R KARLVA+GY+Q GI+Y +TF+PV L +RL L+ A L+Q+D+K+AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1323 LNGVIEEEVYVKQP 1336
L+G +EE++Y++QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>BI321712
Length = 399
Score = 122 bits (307), Expect = 1e-27
Identities = 58/124 (46%), Positives = 85/124 (67%)
Frame = -3
Query: 1401 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1460
+YVDD+IF N S+ +EF K M +EFEM+ MG + ++LGI++ Q +G+++ Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1461 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1520
+LKKFK++D + TPM LSK + G VD LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1521 CARF 1524
+R+
Sbjct: 19 VSRY 8
>BG508993
Length = 374
Score = 120 bits (301), Expect = 5e-27
Identities = 55/123 (44%), Positives = 83/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 1544 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1603
KGT + GL Y S +YKL+GFCD+D+AGD +RKST+G F+G+ + +W+SK+Q + +
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1604 STAEAEYISAASCCTQLLWMKHQLEDYQ-INANSIPIYCDNTAAICLSKNPILHSRAKHI 1662
T EAEY++A SC +W++ LE+ Q + S IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1663 EIK 1665
+ +
Sbjct: 364 DTR 372
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 120 bits (300), Expect = 7e-27
Identities = 57/122 (46%), Positives = 85/122 (68%)
Frame = +1
Query: 1397 LIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTK 1456
LIV +YVDD++ +A L +EF + M FEM+ +G + +FLGI+I QS+ V + Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1457 YTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1516
Y KE+LKKF++E+CK ++TPM+ +K D +D+ YR +IG L+YLTA+RPDILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1517 SV 1518
++
Sbjct: 553 AI 558
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,680,827
Number of Sequences: 63676
Number of extensions: 915793
Number of successful extensions: 4304
Number of sequences better than 10.0: 192
Number of HSP's better than 10.0 without gapping: 4115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4247
length of query: 1716
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1606
effective length of database: 5,635,272
effective search space: 9050246832
effective search space used: 9050246832
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC149496.5