BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149491.7 - phase: 0
(114 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218557 similar to UP|Q6NLH0 (Q6NLH0) At3g16980, complete 239 1e-64
TC222198 weakly similar to UP|Q6NLH0 (Q6NLH0) At3g16980, partial... 134 8e-33
TC234998 51 7e-08
TC229888 weakly similar to UP|RPCZ_HUMAN (Q9Y2Y1) DNA-directed R... 45 5e-06
TC209091 weakly similar to UP|O82604 (O82604) T2L5.6 protein, pa... 28 0.49
TC234761 28 0.83
AW458859 27 1.1
TC205208 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase ... 27 1.4
BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidop... 26 2.4
BG043416 weakly similar to GP|15081773|gb At1g61890/F8K4_9 {Arab... 26 2.4
TC217998 similar to UP|Q8L7U0 (Q8L7U0) AT3g03330/T21P5_25, parti... 26 3.2
BM732841 similar to GP|10177640|dbj contains similarity to hepar... 25 4.1
AW760951 weakly similar to PIR|S71770|S717 calcium-dependent pro... 25 5.4
TC215473 weakly similar to GB|AAP37737.1|30725430|BT008378 At1g7... 25 5.4
TC228597 weakly similar to UP|Q93WY1 (Q93WY1) Calmodulin-like pr... 25 5.4
TC207202 similar to UP|AZF1_YEAST (P41696) Asparagine-rich zinc ... 25 5.4
TC230675 similar to PDB|1SCH_A.0|1633130|1SCH_A Chain A, Peanut ... 25 7.1
BI497474 similar to GP|15451228|gb| photoreceptor-interacting pr... 25 7.1
TC210186 UP|Q93WQ0 (Q93WQ0) Subtilisin-type protease, complete 25 7.1
TC205963 25 7.1
>TC218557 similar to UP|Q6NLH0 (Q6NLH0) At3g16980, complete
Length = 772
Score = 239 bits (610), Expect = 1e-64
Identities = 106/114 (92%), Positives = 110/114 (95%)
Frame = +1
Query: 1 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
MS MKFCRECNNILYPKEDR+QK+LL+ACRNCDHQE ADNFCVYRNEIHHSV ERTQVLQ
Sbjct: 76 MSAMKFCRECNNILYPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQ 255
Query: 61 DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
DVAADPTLPRTK+VRC QCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 256 DVAADPTLPRTKSVRCSQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 417
>TC222198 weakly similar to UP|Q6NLH0 (Q6NLH0) At3g16980, partial (69%)
Length = 810
Score = 134 bits (336), Expect = 8e-33
Identities = 59/80 (73%), Positives = 68/80 (84%)
Frame = +1
Query: 35 QEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGE 94
QE AD+ VYRN+IHHSV RT+ L++VAADPTLPRTK+VRC QCNHGEAVFF+A +GE
Sbjct: 502 QEIADSNVVYRNKIHHSVQRRTRELENVAADPTLPRTKSVRCSQCNHGEAVFFKAPVKGE 681
Query: 95 EGMTLFFVCCNPNCGHRWRD 114
EGM L FVCCNP CG+RWRD
Sbjct: 682 EGMALIFVCCNPTCGYRWRD 741
>TC234998
Length = 431
Score = 51.2 bits (121), Expect = 7e-08
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +2
Query: 89 ATARGEEGMTLFFVCCNPNCGHRWRD 114
A +GEEGM L FVCCNP CG+RWRD
Sbjct: 182 APVKGEEGMALIFVCCNPTCGYRWRD 259
>TC229888 weakly similar to UP|RPCZ_HUMAN (Q9Y2Y1) DNA-directed RNA
polymerases III 12.5 kDa polypeptide (RNA polymerase
III C11 subunit) (HsC11p) (hRPC11) (My010 protein) ,
partial (41%)
Length = 838
Score = 45.1 bits (105), Expect = 5e-06
Identities = 34/118 (28%), Positives = 52/118 (43%), Gaps = 7/118 (5%)
Frame = +2
Query: 4 MKFCRECNNILY---PKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
M+FC C N+L P R + AC H E R EI + ++
Sbjct: 251 MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIEN-------RVEIKRKQRLVRKEIE 409
Query: 61 DVAADPTL---PRTKAVRCVQCNHGEAVFFQATARG-EEGMTLFFVCCNPNCGHRWRD 114
+ ++ + P T+A C C HG+A F + R +E TLF+ C N +C +WR+
Sbjct: 410 PIFSEDDMTNAPSTEAT-CPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 580
>TC209091 weakly similar to UP|O82604 (O82604) T2L5.6 protein, partial (66%)
Length = 850
Score = 28.5 bits (62), Expect = 0.49
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 88 QATARGEEGMTLFFVCCNPNCGHRW 112
+ T RG T+ ++C +P+CG RW
Sbjct: 611 ELTLRGFPFSTMIWLCISPSCGVRW 537
>TC234761
Length = 1159
Score = 27.7 bits (60), Expect = 0.83
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 32 CDHQEAADNFCVYRNE 47
CDH + D+FC+Y N+
Sbjct: 649 CDHNKRKDSFCLYHNQ 696
>AW458859
Length = 343
Score = 27.3 bits (59), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 71 TKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNP 106
T + V N ++VF+ +T RG + M +FV NP
Sbjct: 38 TDKIVTVAINTKQSVFYGSTGRGHKLMNPYFVYMNP 145
>TC205208 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase family 7
member A1 , partial (95%)
Length = 1900
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 78 QCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRW 112
QCN+ R + G T++FVCC CG+ W
Sbjct: 850 QCNNSHG*-----CRHQIGCTIYFVCC---CGYYW 930
>BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (9%)
Length = 402
Score = 26.2 bits (56), Expect = 2.4
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = -2
Query: 10 CNNILYPKEDREQKILLYACRNCDHQEAADNF 41
CN ++ + K+L YAC+ C H + N+
Sbjct: 185 CNGVVM*VHLSQ*KLLKYACKECLHTQTFGNY 90
>BG043416 weakly similar to GP|15081773|gb At1g61890/F8K4_9 {Arabidopsis
thaliana}, partial (20%)
Length = 386
Score = 26.2 bits (56), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +3
Query: 46 NEIHHSVAERTQVLQDVAADPTLPRTKAV 74
N HH L++V +DPTLP +K +
Sbjct: 48 NSTHHHHHSADSRLEEVLSDPTLPWSKRI 134
>TC217998 similar to UP|Q8L7U0 (Q8L7U0) AT3g03330/T21P5_25, partial (90%)
Length = 1244
Score = 25.8 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 82 GEAVFFQATARGEEGMTLFFVCCNP 106
G+ +FF+ TAR +EG + C+P
Sbjct: 986 GKHIFFELTARKKEGHLMPICSCSP 1060
>BM732841 similar to GP|10177640|dbj contains similarity to
heparanase~gene_id:MGG23.2 {Arabidopsis thaliana},
partial (16%)
Length = 421
Score = 25.4 bits (54), Expect = 4.1
Identities = 7/15 (46%), Positives = 12/15 (79%)
Frame = -3
Query: 98 TLFFVCCNPNCGHRW 112
T+ ++C +P+CG RW
Sbjct: 407 TMIWLCISPSCGVRW 363
>AW760951 weakly similar to PIR|S71770|S717 calcium-dependent protein kinase
(EC 2.7.1.-) - mung bean, partial (20%)
Length = 385
Score = 25.0 bits (53), Expect = 5.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 31 NCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAAD 65
+C H +N + R ++HH+ R +V Q D
Sbjct: 362 SCSHYHPFNNIDILR*DVHHARVSRHEVKQQ*TRD 258
>TC215473 weakly similar to GB|AAP37737.1|30725430|BT008378 At1g70770
{Arabidopsis thaliana;} , partial (56%)
Length = 2258
Score = 25.0 bits (53), Expect = 5.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 11 NNILYPKEDREQKILLYACRNCDHQEAA 38
+++ YP +D E+ ILL A N HQ+A+
Sbjct: 1651 SSLWYPSDDHEETILLIAPSN--HQKAS 1574
>TC228597 weakly similar to UP|Q93WY1 (Q93WY1) Calmodulin-like protein
(Fragment), partial (52%)
Length = 774
Score = 25.0 bits (53), Expect = 5.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 30 RNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADP 66
R C HQ A +F +HS+ TQ Q DP
Sbjct: 512 RICHHQGDATSFATLSG*CNHSLLSPTQTSQKPFLDP 402
>TC207202 similar to UP|AZF1_YEAST (P41696) Asparagine-rich zinc finger
protein AZF1, partial (3%)
Length = 591
Score = 25.0 bits (53), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (46%), Gaps = 2/38 (5%)
Frame = +2
Query: 25 LLYACRNCDHQEAADNFCVYRNEIHHSVAE--RTQVLQ 60
L+ RNC E++ N C Y H E R +VLQ
Sbjct: 173 LISHVRNCTASESSTNGCNYEQRRHRFAVEKLRKRVLQ 286
>TC230675 similar to PDB|1SCH_A.0|1633130|1SCH_A Chain A, Peanut Peroxidase.
{Arachis hypogaea;} , partial (93%)
Length = 1386
Score = 24.6 bits (52), Expect = 7.1
Identities = 16/51 (31%), Positives = 22/51 (42%)
Frame = -1
Query: 31 NCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNH 81
+C H + D C RN +H T+VL P + R RC+ C H
Sbjct: 786 SCHHHHSWDR-CFSRN-LH------TRVLYRYRCKPLIGRLNTWRCLLCEH 658
>BI497474 similar to GP|15451228|gb| photoreceptor-interacting protein-like
{Arabidopsis thaliana}, partial (16%)
Length = 426
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/49 (26%), Positives = 25/49 (50%), Gaps = 8/49 (16%)
Frame = -1
Query: 25 LLYACRNCDHQEAADNFCVYRNEIHHS--------VAERTQVLQDVAAD 65
+ ++ R+C Q+A N C + ++ HH + + Q+LQ+V D
Sbjct: 366 IFFSFRSC*FQDAPLNTCQWHDKGHHEMLL*SLILIQQD*QILQEVNLD 220
>TC210186 UP|Q93WQ0 (Q93WQ0) Subtilisin-type protease, complete
Length = 2401
Score = 24.6 bits (52), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (49%)
Frame = -1
Query: 50 HSVAERTQVLQDVAADPTLPRTKAVRCVQCNH 81
HS+ + VLQ+ + + TK C+ C H
Sbjct: 148 HSLLKMNFVLQETTRECRINATKVYHCLSC*H 53
>TC205963
Length = 1308
Score = 24.6 bits (52), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 77 VQCNHGEAVFFQATARGEEGMTLFFVCCNP 106
V N ++VF+ T RG + + +FV NP
Sbjct: 811 VAINTKQSVFYGTTVRGHKLLDPYFVFMNP 900
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,415,901
Number of Sequences: 63676
Number of extensions: 105222
Number of successful extensions: 660
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of query: 114
length of database: 12,639,632
effective HSP length: 90
effective length of query: 24
effective length of database: 6,908,792
effective search space: 165811008
effective search space used: 165811008
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC149491.7