BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149490.13 + phase: 0
(227 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI322052 202 1e-52
TC227015 79 2e-15
BU550961 77 8e-15
TC203807 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc ... 62 2e-10
BE800624 60 6e-10
TC203701 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc ... 59 2e-09
BU549380 similar to GP|16323057|gb| AT5g57660/MRI1_1 {Arabidopsi... 59 2e-09
TC213470 similar to UP|P93810 (P93810) F19P19.3, partial (10%) 59 2e-09
TC204284 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, ... 58 3e-09
TC207413 similar to UP|Q6R3R1 (Q6R3R1) CONSTANS-like protein CO2... 57 7e-09
TC204287 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, ... 55 3e-08
TC230005 similar to UP|Q6UEI7 (Q6UEI7) Timing of CAB expression ... 55 3e-08
TC228296 similar to UP|O81035 (O81035) Expressed protein (Pseudo... 54 6e-08
AW348791 similar to GP|10946337|gb CONSTANS-like protein {Ipomoe... 52 2e-07
BI967626 52 2e-07
TC226490 similar to UP|O81035 (O81035) Expressed protein (Pseudo... 52 3e-07
TC229109 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator... 51 4e-07
BG406206 51 5e-07
TC228295 similar to UP|COLB_ARATH (Q9SSE5) Zinc finger protein c... 50 6e-07
TC224788 weakly similar to UP|Q6UV11 (Q6UV11) Pseudo-response re... 50 1e-06
>BI322052
Length = 432
Score = 202 bits (513), Expect = 1e-52
Identities = 99/127 (77%), Positives = 106/127 (82%)
Frame = +1
Query: 101 HHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLA 160
H+HH DSPLSSESSMIIEGMSR C YSPEEKKVRIERYR KR+QRNFNKKIKY CRKTLA
Sbjct: 1 HNHHSDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRSQRNFNKKIKYACRKTLA 180
Query: 161 DRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDEKWNNIFNSIVAANLVHDEFQGS 220
D RPRIRGRFARNDEIDK ++WS IG GE+EDEEDE W + +SIVAAN E QGS
Sbjct: 181 DSRPRIRGRFARNDEIDKNTTIQWSQIGAGEDEDEEDENWITMLDSIVAANFA-QESQGS 357
Query: 221 SSFGLLY 227
SSFGL Y
Sbjct: 358 SSFGLFY 378
>TC227015
Length = 1296
Score = 79.0 bits (193), Expect = 2e-15
Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Frame = +3
Query: 41 PSTPILMQRSISSHSLQYNNGTHHYPLSAFFADLLDSD---DAPVRKVCSTGDLQRINGM 97
P T + + +S+SS SL + + F D+ D D +R+ S GD++ +
Sbjct: 552 PFTDMQLAKSVSSGSLSSMDWMRGAAMKPAFIDIPAIDFNADYGMRRSFSEGDIKTLGNG 731
Query: 98 QHNHHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRK 157
N V SPL E ++I + EE+ ++ RYR K+ +RNF +KIKY CRK
Sbjct: 732 NMNI---VQSPL--ERPLLISNCTS------EERFQKLSRYRNKKTKRNFGRKIKYACRK 878
Query: 158 TLADRRPRIRGRFARNDEIDKK 179
LAD +PRIRGRFAR +E D K
Sbjct: 879 ALADSQPRIRGRFARTEESDVK 944
>BU550961
Length = 603
Score = 76.6 bits (187), Expect = 8e-15
Identities = 40/66 (60%), Positives = 44/66 (66%)
Frame = -1
Query: 135 IERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEED 194
I +YR KR+QR FNK IKY CRKTLAD R RIRGRFARNDEI + P S E+
Sbjct: 603 ISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDEISEIPKAPCS---SSTTEE 433
Query: 195 EEDEKW 200
EDE W
Sbjct: 432 YEDEFW 415
>TC203807 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc finger
protein-like, partial (49%)
Length = 1780
Score = 62.0 bits (149), Expect = 2e-10
Identities = 50/173 (28%), Positives = 78/173 (44%), Gaps = 4/173 (2%)
Frame = +1
Query: 9 DFTELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNNGTHHYPLS 68
DF +SFQ+ S +N+S + P + P L I++H HH +
Sbjct: 667 DFDYSNSFQNHNSAVNDSVV----------PVQTKPSLAPPPINNHQ------HHHQSET 798
Query: 69 AFFADL----LDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGMSRVC 124
F D L S + P + + + ++ + V S +S S +++ G
Sbjct: 799 CFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTV-SDMSYSSGIVVSGGQGAT 975
Query: 125 PYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEID 177
+++ R+ RYR KR R F K I+Y RK A+ RPRI+GRFA+ EID
Sbjct: 976 QLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEID 1134
>BE800624
Length = 223
Score = 60.5 bits (145), Expect = 6e-10
Identities = 25/45 (55%), Positives = 33/45 (72%)
Frame = +2
Query: 183 EWSHIGGGEEEDEEDEKWNNIFNSIVAANLVHDEFQGSSSFGLLY 227
+WSH+G GEEE+EE+E W N F+S+V ANL + SSSFG+ Y
Sbjct: 5 QWSHMGNGEEEEEEEENWANFFDSLVPANLAQEPQGSSSSFGVFY 139
>TC203701 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc finger
protein-like, partial (25%)
Length = 1289
Score = 58.5 bits (140), Expect = 2e-09
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Frame = +3
Query: 110 SSESSMII--------EGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLAD 161
SS+SS I+ +G +++C +++ R+ RYR KR R F K I+Y RK A+
Sbjct: 426 SSDSSGIVVVSGNSVGQGATQLCGM---DREARVLRYREKRKNRKFEKTIRYASRKAYAE 596
Query: 162 RRPRIRGRFARNDEID 177
RPRI+GRFA+ EID
Sbjct: 597 TRPRIKGRFAKRTEID 644
>BU549380 similar to GP|16323057|gb| AT5g57660/MRI1_1 {Arabidopsis thaliana},
partial (18%)
Length = 657
Score = 58.5 bits (140), Expect = 2e-09
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 16/89 (17%)
Frame = -2
Query: 105 VDSPLSSESSMIIEG----------MSRVCP------YSPEEKKVRIERYRIKRNQRNFN 148
V SP S E ++ +G S+V P +S +++ R+ RYR KR R F
Sbjct: 392 VSSPSSMEXXVVPDGNTMSEISNCSYSKVAPVTVTAQFSAADREARVLRYREKRKNRKFE 213
Query: 149 KKIKYVCRKTLADRRPRIRGRFARNDEID 177
K I+Y RK A+ RPRI+GRFA+ + D
Sbjct: 212 KTIRYASRKAYAETRPRIKGRFAKRTDAD 126
>TC213470 similar to UP|P93810 (P93810) F19P19.3, partial (10%)
Length = 545
Score = 58.5 bits (140), Expect = 2e-09
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +2
Query: 148 NKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDEKWNNIFNSI 207
+KKIKY CRKTLAD RPR+RGRFA+ND+ + S+ EED+E+E + +
Sbjct: 14 SKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSN----HEEDDEEEVVVKDEDDM 181
Query: 208 VAANLVHDEFQGSSSFGLLY 227
V ++ + G +SF Y
Sbjct: 182 VDSSDIFAHISGVNSFKCNY 241
>TC204284 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(60%)
Length = 1202
Score = 58.2 bits (139), Expect = 3e-09
Identities = 34/96 (35%), Positives = 49/96 (50%), Gaps = 16/96 (16%)
Frame = +3
Query: 98 QHNHHHHVDSPLSSESSMIIEG----------MSRVCP------YSPEEKKVRIERYRIK 141
Q + V SP S E ++ +G S+V P +S +++ R+ RYR K
Sbjct: 684 QSHMSQSVSSPSSMEVGVVPDGNTMSEISNCSYSKVAPVTVTAQFSAADREARVLRYREK 863
Query: 142 RNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEID 177
R R F K I+Y RK A+ RPRI+GRFA+ + D
Sbjct: 864 RKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAD 971
>TC207413 similar to UP|Q6R3R1 (Q6R3R1) CONSTANS-like protein CO2, partial
(38%)
Length = 871
Score = 57.0 bits (136), Expect = 7e-09
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +3
Query: 126 YSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEID 177
+SP +++ R+ RYR K+ R F K I+Y RK A+ RPRI+GRFA+ +++
Sbjct: 372 FSPMDREARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVE 527
>TC204287 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(59%)
Length = 1251
Score = 54.7 bits (130), Expect = 3e-08
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +1
Query: 126 YSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEID 177
+S +++ R+ RYR KR R F K I+Y RK A+ RPRI+GRFA+ + D
Sbjct: 781 FSAADREARVLRYREKRKNRKFEKTIRYASRKAYAEARPRIKGRFAKRTDPD 936
>TC230005 similar to UP|Q6UEI7 (Q6UEI7) Timing of CAB expression 1, partial
(15%)
Length = 856
Score = 54.7 bits (130), Expect = 3e-08
Identities = 29/79 (36%), Positives = 49/79 (61%), Gaps = 5/79 (6%)
Frame = +3
Query: 129 EEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR-----NDEIDKKPIVE 183
+ ++ + ++R KR +R F+KKI+YV RK LA+RRPR+RG+F R N +++ +P
Sbjct: 114 DRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGINVDLNGQP--- 284
Query: 184 WSHIGGGEEEDEEDEKWNN 202
+ DE+DE+ +N
Sbjct: 285 -----ASTDYDEDDEEEDN 326
>TC228296 similar to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (14%)
Length = 1371
Score = 53.9 bits (128), Expect = 6e-08
Identities = 34/122 (27%), Positives = 61/122 (49%)
Frame = +3
Query: 69 AFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGMSRVCPYSP 128
+FF D + + + V + S G+ + +H +DS S I R
Sbjct: 687 SFFHDTANHNSSGVYR--SDGNATSAKVAKESHEIFIDSGQRSYDGFIGTDSHRT----- 845
Query: 129 EEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIG 188
+++ + ++R+KR R + KK++Y RK LA++RPR++G+F R D P+ + +G
Sbjct: 846 SQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVH-DDHPVAD---VG 1013
Query: 189 GG 190
GG
Sbjct: 1014GG 1019
>AW348791 similar to GP|10946337|gb CONSTANS-like protein {Ipomoea nil},
partial (27%)
Length = 586
Score = 52.4 bits (124), Expect = 2e-07
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = -1
Query: 126 YSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEID 177
+ P +++ + RYR K+ R F K I+Y RK A+ RPRI+GRFA+ +++
Sbjct: 421 FXPMDREXXVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVE 266
>BI967626
Length = 341
Score = 52.0 bits (123), Expect = 2e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = -1
Query: 126 YSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPI 181
+S + R+ RYR KRN R F I+Y RK A+ RPRI+GRFA + ID P+
Sbjct: 296 FSAADXXXRVLRYREKRNTRKFEMSIRYASRKAYAEARPRIKGRFA--NRIDPDPL 135
>TC226490 similar to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (9%)
Length = 1411
Score = 51.6 bits (122), Expect = 3e-07
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +1
Query: 118 EGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDE 175
+G P+ +++ + ++R+KR +R F KK++Y RK LA++RPR++G+F R +
Sbjct: 907 DGFRVTDPHRSSQREAVLVKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQHD 1080
>TC229109 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator 5, partial
(7%)
Length = 1011
Score = 51.2 bits (121), Expect = 4e-07
Identities = 29/92 (31%), Positives = 51/92 (54%), Gaps = 5/92 (5%)
Frame = +2
Query: 130 EKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGG 189
+++ + ++R+KR +R + KK++Y RK LA++RPR++G+F R ++ P+V
Sbjct: 581 QREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVR--QVHPDPLVAEK---D 745
Query: 190 GEEEDEED-----EKWNNIFNSIVAANLVHDE 216
G+E D D E+ N IVA+ E
Sbjct: 746 GKEYDHSDF*LTGEESMNSLEYIVASKFCFPE 841
>BG406206
Length = 318
Score = 50.8 bits (120), Expect = 5e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +2
Query: 153 YVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDEK 199
Y CRKTLAD RPR+RGRFA+ND+ + SH G +++DE+
Sbjct: 50 YACRKTLADSRPRVRGRFAKNDDFGE------SHKQGSSNHEDDDEE 172
>TC228295 similar to UP|COLB_ARATH (Q9SSE5) Zinc finger protein constans-like
11, partial (35%)
Length = 1370
Score = 50.4 bits (119), Expect = 6e-07
Identities = 28/76 (36%), Positives = 40/76 (51%), Gaps = 7/76 (9%)
Frame = +1
Query: 113 SSMIIEGMSRVCPYSPEE------KKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRI 166
SSM++ G CP PE + + RY+ K+ R F KK++Y RK AD R R+
Sbjct: 364 SSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRV 543
Query: 167 RGRFAR-NDEIDKKPI 181
+GRF + D D P+
Sbjct: 544 KGRFVKAGDVYDYDPL 591
>TC224788 weakly similar to UP|Q6UV11 (Q6UV11) Pseudo-response regulator
protein (Fragment), partial (12%)
Length = 1699
Score = 49.7 bits (117), Expect = 1e-06
Identities = 20/42 (47%), Positives = 32/42 (75%)
Frame = +3
Query: 131 KKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR 172
++ + ++R+KR +R F KK++Y RK LA++RPRIRG+F R
Sbjct: 702 REAALTKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVR 827
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,193,811
Number of Sequences: 63676
Number of extensions: 173300
Number of successful extensions: 1677
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of query: 227
length of database: 12,639,632
effective HSP length: 94
effective length of query: 133
effective length of database: 6,654,088
effective search space: 884993704
effective search space used: 884993704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149490.13