BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149471.8 + phase: 0
(229 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204634 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing prot... 404 e-113
TC204632 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing prot... 290 5e-79
TC204631 weakly similar to UP|NOA1_MOUSE (Q9JKN6) RNA-binding pr... 272 1e-73
TC204636 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing prot... 178 2e-45
TC204633 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {A... 129 1e-30
TC204637 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing prot... 79 2e-15
CO983887 47 7e-06
BE805631 40 9e-04
TC221113 weakly similar to UP|Q9FWS3 (Q9FWS3) F1B16.12 protein, ... 39 0.003
TC217215 weakly similar to UP|Q84ZX0 (Q84ZX0) HEN4, partial (31%) 37 0.006
TC231255 similar to UP|Q93ZP3 (Q93ZP3) At1g32359/F27G20.10, part... 35 0.022
TC204635 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {A... 35 0.028
BG510472 34 0.048
TC206602 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription... 33 0.14
TC218822 33 0.14
TC220403 similar to UP|Q7X7W8 (Q7X7W8) Makorin ring-zinc-finger ... 32 0.18
BM731512 32 0.18
BQ295977 similar to GP|8843784|dbj zinc finger transcription fac... 32 0.18
CO979748 32 0.31
TC205752 32 0.31
>TC204634 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing protein-like,
partial (67%)
Length = 1248
Score = 404 bits (1038), Expect = e-113
Identities = 191/229 (83%), Positives = 206/229 (89%)
Frame = +1
Query: 1 MINVGSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWE 60
+INVGS+P P +GRNP VP SFPDGSSPPV KTRLCNKFNTAEGCKFGDKCHFAHGEWE
Sbjct: 406 LINVGSNPVTPQVGRNP-VPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWE 582
Query: 61 LGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIG 120
LGRPT P+YED R MGQM SS VGGR+EPP PAHGAAA FG SATA +SINA+LAGA+IG
Sbjct: 583 LGRPTAPSYEDPRVMGQMPSSRVGGRVEPPHPAHGAAASFGASATAKISINASLAGAVIG 762
Query: 121 KNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGP 180
KN VNSKQIC +TGAKLSIR+HD+DPNLRNIELEGSFDQIKQASAMVH++ILNVSS SGP
Sbjct: 763 KNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEVILNVSSASGP 942
Query: 181 PGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRKPGM 229
P K+ TSQTSAP +NFKTKLCENF KGSCTFGERCHFAHGTDELRK GM
Sbjct: 943 PMKSFTSQTSAPTSNFKTKLCENFAKGSCTFGERCHFAHGTDELRKSGM 1089
Score = 37.7 bits (86), Expect = 0.004
Identities = 16/35 (45%), Positives = 21/35 (59%)
Frame = +1
Query: 22 SFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAH 56
SFP G +K++ C KF + GC FG+ CHF H
Sbjct: 277 SFPTGLG---SKSKPCTKFFSTSGCPFGEGCHFLH 372
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 197 KTKLCENFTKGS-CTFGERCHFAH 219
K+K C F S C FGE CHF H
Sbjct: 301 KSKPCTKFFSTSGCPFGEGCHFLH 372
>TC204632 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing protein-like,
partial (58%)
Length = 1220
Score = 290 bits (741), Expect = 5e-79
Identities = 146/224 (65%), Positives = 169/224 (75%), Gaps = 3/224 (1%)
Frame = +2
Query: 9 AIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPA 68
A PP RN P+GS+P KTR+CNKFNTAEGCKFGDKCHFAHGEWELG+ P+
Sbjct: 374 APPPPSRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPS 553
Query: 69 YEDTRAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQ 128
++D RAMG + + GR+EPPP G AA FG +ATA +S+ A+LAGAIIGK VNSKQ
Sbjct: 554 FDDHRAMGPPGAGRLAGRMEPPP---GPAASFGANATAKISVEASLAGAIIGKGGVNSKQ 724
Query: 129 ICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQ 188
IC TGAKLSIREH+SDPNLRNIELEGSF+QIK+AS MV DL+L + +S PP K
Sbjct: 725 ICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTL-QMSAPP-KTTPGV 898
Query: 189 TSAPA---NNFKTKLCENFTKGSCTFGERCHFAHGTDELRKPGM 229
APA +NFKTKLCENFTKGSCTFG+RCHFAHG ELRK G+
Sbjct: 899 PGAPASHGSNFKTKLCENFTKGSCTFGDRCHFAHGASELRKSGV 1030
Score = 28.5 bits (62), Expect = 2.6
Identities = 23/72 (31%), Positives = 30/72 (40%), Gaps = 6/72 (8%)
Frame = +2
Query: 33 KTRLCNKFNTAE------GCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGR 86
+TRL K+ E GC FG+ CHF H VP A+ M + +
Sbjct: 230 ETRLQLKWRIQEIQASTAGCPFGEGCHFLH--------YVPG--GYNAVAHMMNLTPAA- 376
Query: 87 IEPPPPAHGAAA 98
PPPP+ AA
Sbjct: 377 --PPPPSRNVAA 406
>TC204631 weakly similar to UP|NOA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1
(Neuro-oncological ventral antigen 1) (Ventral
neuron-specific protein 1) (Fragment), partial (6%)
Length = 1150
Score = 272 bits (695), Expect = 1e-73
Identities = 137/219 (62%), Positives = 160/219 (72%), Gaps = 5/219 (2%)
Frame = +2
Query: 8 PAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVP 67
PA PP R P P+GS+P KTR+CNKFNTAEGCKFGDKCHFAHGEWELG+P P
Sbjct: 347 PAAPP-PRTVAAPPPIPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAP 523
Query: 68 AYEDT---RAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDV 124
+ +D R +G + GRIEPPP G+ FG +TA +S+ A+LAGAIIGK V
Sbjct: 524 SIDDHHHHRPLGPPAGGRMAGRIEPPPAMAGS---FGAISTAKISVEASLAGAIIGKGGV 694
Query: 125 NSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGK- 183
NSKQIC TGAKLSIREH+SDPNLRNIELEG+F+QIK+AS MV DL+L V S+S PP
Sbjct: 695 NSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTV-SMSAPPKST 871
Query: 184 -NITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGT 221
+ + P +NFKTKLCENF KGSCTFGERCHFAHG+
Sbjct: 872 PGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGS 988
Score = 44.3 bits (103), Expect = 5e-05
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 178 SGPPGKNITSQTSAPANN----FKTKLCENF-TKGSCTFGERCHFAHGTDELRKP 227
+ PP + + + P + KT++C F T C FG++CHFAHG EL KP
Sbjct: 350 AAPPPRTVAAPPPIPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKP 514
Score = 35.4 bits (80), Expect = 0.022
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +2
Query: 27 SSPPVAKTRLCNKFNTAEGCKFGDKCHFAH 56
SS +K++ C KF + GC FG+ CHF H
Sbjct: 209 SSGVGSKSKPCTKFFSTAGCPFGEGCHFLH 298
Score = 28.9 bits (63), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 197 KTKLCENF-TKGSCTFGERCHFAH 219
K+K C F + C FGE CHF H
Sbjct: 227 KSKPCTKFFSTAGCPFGEGCHFLH 298
>TC204636 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing protein-like,
partial (21%)
Length = 654
Score = 178 bits (451), Expect = 2e-45
Identities = 81/98 (82%), Positives = 86/98 (87%)
Frame = +1
Query: 1 MINVGSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWE 60
+INVGS+P P +GRNP VP SFPDGSSPPV KTRLCNKFNTAEGCKFGDKCHFAHGEWE
Sbjct: 361 LINVGSNPVTPQVGRNP-VPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWE 537
Query: 61 LGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAHGAAA 98
LGRPT P+YED R MGQM SS VGGR+EPP PAHGAAA
Sbjct: 538 LGRPTAPSYEDPRVMGQMPSSRVGGRVEPPHPAHGAAA 651
Score = 42.0 bits (97), Expect = 2e-04
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 197 KTKLCENF-TKGSCTFGERCHFAHGTDELRKP 227
KT+LC F T C FG++CHFAHG EL +P
Sbjct: 454 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 549
>TC204633 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Arabidopsis
thaliana;} , partial (38%)
Length = 741
Score = 129 bits (323), Expect = 1e-30
Identities = 59/100 (59%), Positives = 71/100 (71%)
Frame = +3
Query: 7 SPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTV 66
+PA PP RN P+GS+P KTR+CNKFNTAEGCKFGDKCHFAHGEWELG+
Sbjct: 450 TPAAPPASRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIA 629
Query: 67 PAYEDTRAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATA 106
P+++D RAMG + + GR+EPPP G AA FG +ATA
Sbjct: 630 PSFDDHRAMGPPGAGRLAGRMEPPP---GPAASFGANATA 740
Score = 45.1 bits (105), Expect = 3e-05
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +3
Query: 164 SAMVHDLILNVSSVSGPPGKNITSQTSAPANN----FKTKLCENF-TKGSCTFGERCHFA 218
+A+ H ++N++ + P +N+ + P + KT++C F T C FG++CHFA
Sbjct: 423 NAVAH--MMNLTPAAPPASRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFA 596
Query: 219 HGTDELRK 226
HG EL K
Sbjct: 597 HGEWELGK 620
Score = 35.0 bits (79), Expect = 0.028
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH 56
+K++ C KF + GC FG+ CHF H
Sbjct: 330 SKSKPCTKFFSTAGCPFGEGCHFLH 404
Score = 28.9 bits (63), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 197 KTKLCENF-TKGSCTFGERCHFAH 219
K+K C F + C FGE CHF H
Sbjct: 333 KSKPCTKFFSTAGCPFGEGCHFLH 404
>TC204637 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing protein-like,
partial (21%)
Length = 503
Score = 78.6 bits (192), Expect = 2e-15
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 7 SPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAH 56
+PA PP RN P+GS+PP KTR+CNKFNTAEGCK GDKCHFAH
Sbjct: 354 TPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKXGDKCHFAH 503
Score = 37.4 bits (85), Expect = 0.006
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 5/61 (8%)
Frame = +3
Query: 164 SAMVHDLILNVSSVSGPPGKNITSQTSAPANN----FKTKLCENF-TKGSCTFGERCHFA 218
+A+ H ++N++ + P +N+ + P + KT++C F T C G++CHFA
Sbjct: 327 NAVAH--MMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKXGDKCHFA 500
Query: 219 H 219
H
Sbjct: 501 H 503
Score = 26.9 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Frame = +3
Query: 33 KTRLCNKFNTAE------GCKFGDKCHFAH 56
+TRL K+ E GC FG+ CHF H
Sbjct: 219 RTRLQLKWRIQEIQASTAGCPFGEGCHFLH 308
>CO983887
Length = 795
Score = 47.0 bits (110), Expect = 7e-06
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = -2
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 64
KT+LC KF T C FGD CHFAHG+ EL P
Sbjct: 638 KTKLCIKFETTGHCPFGDDCHFAHGQAELQVP 543
Score = 46.2 bits (108), Expect = 1e-05
Identities = 21/34 (61%), Positives = 24/34 (69%), Gaps = 1/34 (2%)
Frame = -2
Query: 196 FKTKLCENF-TKGSCTFGERCHFAHGTDELRKPG 228
+KTKLC F T G C FG+ CHFAHG EL+ PG
Sbjct: 641 WKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPG 540
>BE805631
Length = 196
Score = 40.0 bits (92), Expect = 9e-04
Identities = 15/31 (48%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = +2
Query: 196 FKTKLCENFT-KGSCTFGERCHFAHGTDELR 225
+KT++C+N+ +G+C FG++C FAHG EL+
Sbjct: 2 YKTEMCKNWELRGACKFGDKCCFAHGRHELK 94
Score = 40.0 bits (92), Expect = 9e-04
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = +2
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWEL 61
KT +C + CKFGDKC FAHG EL
Sbjct: 5 KTEMCKNWELRGACKFGDKCCFAHGRHEL 91
>TC221113 weakly similar to UP|Q9FWS3 (Q9FWS3) F1B16.12 protein, partial
(12%)
Length = 548
Score = 38.5 bits (88), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = +3
Query: 194 NNFKTKLCENFTKGSCTFGERCHFAHGTDELRKPGM 229
+N +C NF +GSC +GERC + H + RKP +
Sbjct: 141 HNTMRDICRNFQRGSCQYGERCRYLH-VQQQRKPNV 245
>TC217215 weakly similar to UP|Q84ZX0 (Q84ZX0) HEN4, partial (31%)
Length = 1798
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/82 (24%), Positives = 42/82 (50%)
Frame = +2
Query: 95 GAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELE 154
G+ + T +++ + G++ G+N N ++ I+GAK+ + E + R I +
Sbjct: 1169 GSKTAIVTNTTVQIAVPDDVIGSVYGENGSNLARLRQISGAKVIVHEPRPGTSDRTIIIS 1348
Query: 155 GSFDQIKQASAMVHDLILNVSS 176
G+ D+ + A +++ IL SS
Sbjct: 1349 GTPDETRAAQSLLQAFILAGSS 1414
>TC231255 similar to UP|Q93ZP3 (Q93ZP3) At1g32359/F27G20.10, partial (19%)
Length = 551
Score = 35.4 bits (80), Expect = 0.022
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 207 GSCTFGERCHFAHGTDELRKPG 228
G C FG +CHFAHG EL + G
Sbjct: 16 GYCPFGNKCHFAHGATELHRYG 81
Score = 33.9 bits (76), Expect = 0.063
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 46 CKFGDKCHFAHGEWELGR 63
C FG+KCHFAHG EL R
Sbjct: 22 CPFGNKCHFAHGATELHR 75
>TC204635 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Arabidopsis
thaliana;} , partial (30%)
Length = 464
Score = 35.0 bits (79), Expect = 0.028
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH 56
+K++ C KF + GC FG+ CHF H
Sbjct: 300 SKSKPCTKFFSTAGCPFGEGCHFLH 374
Score = 28.9 bits (63), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 197 KTKLCENF-TKGSCTFGERCHFAH 219
K+K C F + C FGE CHF H
Sbjct: 303 KSKPCTKFFSTAGCPFGEGCHFLH 374
>BG510472
Length = 428
Score = 34.3 bits (77), Expect = 0.048
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 196 FKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
FKTKLC + +G C C FAHG+ +LR+
Sbjct: 241 FKTKLCVLYQRGRCN-RHNCSFAHGSADLRR 330
>TC206602 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription factor-like
protein (AT5g58620/mzn1_70), partial (31%)
Length = 1855
Score = 32.7 bits (73), Expect = 0.14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C F KGSC+ G+ C +AHG E
Sbjct: 217 CPEFRKGSCSKGDACEYAHGIFE 285
>TC218822
Length = 554
Score = 32.7 bits (73), Expect = 0.14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C +F KGSC G+ C +AHG E
Sbjct: 384 CPDFRKGSCKKGDACEYAHGVFE 452
>TC220403 similar to UP|Q7X7W8 (Q7X7W8) Makorin ring-zinc-finger protein
(Makorin RING finger protein), partial (62%)
Length = 1109
Score = 32.3 bits (72), Expect = 0.18
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +2
Query: 193 ANNFKTKLCENFTKGSCTFGERCHFAH 219
A+ K +C + KGSC +G RC + H
Sbjct: 2 ASEKKDDICTYYKKGSCAYGSRCRYKH 82
>BM731512
Length = 424
Score = 32.3 bits (72), Expect = 0.18
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 183 KNITSQTSAPAN-NFKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
K SQ P + K+ LCE F G CT G +C F+H + RK
Sbjct: 219 KIAVSQPKVPVGVDPKSILCEFFKVGQCTKGFKCKFSHDLNVQRK 353
>BQ295977 similar to GP|8843784|dbj zinc finger transcription factor-like
protein {Arabidopsis thaliana}, partial (22%)
Length = 422
Score = 32.3 bits (72), Expect = 0.18
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C F KGSC+ G+ C +AHG E
Sbjct: 192 CPEFRKGSCSKGDACDYAHGIFE 260
>CO979748
Length = 832
Score = 31.6 bits (70), Expect = 0.31
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 195 NFKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
N + ++C ++ +G C FG+ C F H + R+
Sbjct: 356 NKQKQVCRHYARGKCYFGDNCKFLHDLRDKRE 261
>TC205752
Length = 1020
Score = 31.6 bits (70), Expect = 0.31
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +1
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C ++ KG+C G+ C FAHG E
Sbjct: 244 CPDYRKGNCKRGDTCQFAHGVFE 312
Score = 27.3 bits (59), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = +1
Query: 46 CKFGDKCHFAHGEWE 60
CK GD C FAHG +E
Sbjct: 268 CKRGDTCQFAHGVFE 312
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,606,424
Number of Sequences: 63676
Number of extensions: 177879
Number of successful extensions: 1059
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of query: 229
length of database: 12,639,632
effective HSP length: 94
effective length of query: 135
effective length of database: 6,654,088
effective search space: 898301880
effective search space used: 898301880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149471.8