BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149307.10 + phase: 0 /pseudo
(114 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA936755 52 8e-11
TC232603 weakly similar to UP|Q39482 (Q39482) Legumin (Fragment)... 49 3e-07
TC233199 28 0.001
TC211244 27 1.4
TC214996 UP|Q6GW08 (Q6GW08) Triosephosphate isomerase , partial... 27 1.9
TC207650 27 1.9
TC226415 similar to UP|Q94KD0 (Q94KD0) AT5g58470/mqj2_60, partia... 26 2.4
BM523282 26 2.4
AW184904 26 3.2
CO985573 25 4.1
CK606440 25 4.1
TC213387 25 5.4
BE057742 25 7.1
AW781040 weakly similar to GP|27462842|gb| cytochrome Bc1 comple... 25 7.1
TC210291 similar to UP|Q9LYS2 (Q9LYS2) ABC transporter-like prot... 25 7.1
BM892548 25 7.1
TC223262 similar to GB|AAL49941.1|17979249|AY070475 AT3g04610/F7... 25 7.1
TC223051 similar to UP|O23240 (O23240) Actin interacting protein... 25 7.1
TC229414 weakly similar to UP|Q9LQ93 (Q9LQ93) T1N6.4 protein, pa... 24 9.2
AI495619 24 9.2
>CA936755
Length = 424
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 21/61 (34%), Positives = 35/61 (56%)
Frame = -2
Query: 54 FLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVR 113
FL+S+ +WP+ Q L SDH ++++ + +WGP+P R++ W + GY VR
Sbjct: 294 FLVSEQWLLSWPDSSQYTLPRDFSDHCPIIMQTKKVDWGPKPFRVVDWWLHQKGYQRLVR 115
Query: 114 E 114
E
Sbjct: 114 E 112
Score = 28.9 bits (63), Expect(2) = 8e-11
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYSMSKLDRF 54
FN +I + L + G +TW R + S+LDRF
Sbjct: 400 FNTWISEMELQEIKCVGSTYTWIRPNARVKSRLDRF 293
>TC232603 weakly similar to UP|Q39482 (Q39482) Legumin (Fragment), partial
(4%)
Length = 1123
Score = 48.9 bits (115), Expect = 3e-07
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +2
Query: 26 SFLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIAL 72
SF+V+ + GR + WY+ D +MS+LDRFL+ + +TWPN I L
Sbjct: 518 SFVVNLALVGRKYNWYKDDKTTMSRLDRFLVYEE*LTTWPNMTLILL 658
>TC233199
Length = 1105
Score = 28.1 bits (61), Expect(2) = 0.001
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +1
Query: 51 LDRFLLSDNCYSTWPNCIQIALQSGLSDH 79
LDR L+S +S W IQ L SDH
Sbjct: 466 LDRVLVSVEWFSKWSGSIQFILDRNYSDH 552
Score = 28.1 bits (61), Expect(2) = 0.001
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 8 GSSFRQHDADI---FNKFIDDSFLVDFPICGRLFTWYR 42
G+S R+ I FN +I D + D P G +TWYR
Sbjct: 341 GASQREQGGGIMTEFNDWIVDLEVEDMPSVGHKYTWYR 454
>TC211244
Length = 1212
Score = 26.9 bits (58), Expect = 1.4
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = +1
Query: 97 RMLKCWANFPGYALF 111
RM+ CWA F YALF
Sbjct: 811 RMMGCWATFLSYALF 855
>TC214996 UP|Q6GW08 (Q6GW08) Triosephosphate isomerase , partial (47%)
Length = 554
Score = 26.6 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +3
Query: 53 RFLLSDNCYSTWPNCIQIALQSGLSDHVH 81
R LL N S W N + ALQ GL + H
Sbjct: 432 RQLLK*NQMSLWENKVAYALQQGLKSYYH 518
>TC207650
Length = 1659
Score = 26.6 bits (57), Expect = 1.9
Identities = 16/70 (22%), Positives = 32/70 (44%)
Frame = +1
Query: 27 FLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRV 86
++V CGR+F W + G + ++ NC + P+ + +A SG+ + + +
Sbjct: 1048 YVVSGSDCGRIFIWKKKGGQLIRVMEADKHVVNCIESHPHTMVLA-SSGIENDIKI---- 1212
Query: 87 DEENWGPRPL 96
W P+ L
Sbjct: 1213 ----WTPKAL 1230
>TC226415 similar to UP|Q94KD0 (Q94KD0) AT5g58470/mqj2_60, partial (27%)
Length = 796
Score = 26.2 bits (56), Expect = 2.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 12 RQHDADIFNKFIDDSFLVDFPICGR 36
+QH +IFN ++ L D+P+ R
Sbjct: 662 KQHSPEIFNTYLSSKQLGDYPLSSR 588
>BM523282
Length = 287
Score = 26.2 bits (56), Expect = 2.4
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = +1
Query: 56 LSDNCYSTWPNCIQIALQSGLSDHVH 81
+ D C TWPN + L GL H H
Sbjct: 58 ICDQCS*TWPNSTVMFLPRGLLLHAH 135
>AW184904
Length = 365
Score = 25.8 bits (55), Expect = 3.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 93 PRPLRMLKCWANFPGYALFVR 113
P P+R+ KCW G ALF++
Sbjct: 350 PFPIRVGKCWERGTGGALFLK 288
>CO985573
Length = 417
Score = 25.4 bits (54), Expect = 4.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 15 DADIF----NKFIDDSFLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNC 60
D D+F ++++D D + L W G GY++ R L+ NC
Sbjct: 212 DQDLFAMAVSRYLDQPEKKDLVL--XLIQWMAGQGYAVDSSTRNLIXKNC 69
>CK606440
Length = 481
Score = 25.4 bits (54), Expect = 4.1
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = -2
Query: 91 WGPRPLRMLKCW 102
WGP +R L+CW
Sbjct: 426 WGPESIRCLQCW 391
>TC213387
Length = 861
Score = 25.0 bits (53), Expect = 5.4
Identities = 8/15 (53%), Positives = 12/15 (79%)
Frame = -2
Query: 63 TWPNCIQIALQSGLS 77
+WPNC+ + L+ GLS
Sbjct: 341 SWPNCLSLTLK*GLS 297
>BE057742
Length = 418
Score = 24.6 bits (52), Expect = 7.1
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 10/53 (18%)
Frame = +1
Query: 34 CGRLFTWYRGD----------GYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
CGRL+ W+R + S+++ + F+ +S W NCI L +G+
Sbjct: 211 CGRLYIWHR*NHSLCLY*TRVNKSLNRCNSFI-----FSGW-NCIYFLLDNGI 351
>AW781040 weakly similar to GP|27462842|gb| cytochrome Bc1 complex chain
B-like protein {Sarcoptes scabiei type hominis},
partial (28%)
Length = 417
Score = 24.6 bits (52), Expect = 7.1
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +1
Query: 60 CYSTWPNCIQIALQS 74
C TWPNC+ A S
Sbjct: 43 CLQTWPNCLSCATLS 87
>TC210291 similar to UP|Q9LYS2 (Q9LYS2) ABC transporter-like protein, partial
(10%)
Length = 628
Score = 24.6 bits (52), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -2
Query: 9 SSFRQHDADIFNKFIDDSFLVDFP 32
+SF + D +F KFI S+ FP
Sbjct: 363 TSFPKRDPSLFIKFIGSSYSTSFP 292
>BM892548
Length = 437
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/41 (31%), Positives = 17/41 (40%)
Frame = +1
Query: 7 RGSSFRQHDADIFNKFIDDSFLVDFPICGRLFTWYRGDGYS 47
R SFR IF + + F GRL + G+G S
Sbjct: 22 RSQSFRSEKGTIFPSLKGITIMAQFTTQGRLKLLFNGEGVS 144
>TC223262 similar to GB|AAL49941.1|17979249|AY070475 AT3g04610/F7O18_9
{Arabidopsis thaliana;} , partial (4%)
Length = 445
Score = 24.6 bits (52), Expect = 7.1
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = -2
Query: 73 QSGLSDHVHMVLRVDEENWGPRP 95
Q L HVH+ +ENW P P
Sbjct: 267 QENLQHHVHVHQNDFQENWHPPP 199
>TC223051 similar to UP|O23240 (O23240) Actin interacting protein, partial
(7%)
Length = 577
Score = 24.6 bits (52), Expect = 7.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 56 LSDNCYSTWPNCIQ 69
LSDNC S +P C+Q
Sbjct: 71 LSDNCVSRYP*CLQ 30
>TC229414 weakly similar to UP|Q9LQ93 (Q9LQ93) T1N6.4 protein, partial (7%)
Length = 843
Score = 24.3 bits (51), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 26 SFLVDFPICGRLFTWY 41
SFLV +CG F WY
Sbjct: 441 SFLVSVGVCGCKFIWY 488
>AI495619
Length = 418
Score = 24.3 bits (51), Expect = 9.2
Identities = 11/30 (36%), Positives = 15/30 (49%), Gaps = 6/30 (20%)
Frame = +1
Query: 60 CYSTWPNCI------QIALQSGLSDHVHMV 83
C+S WP C IAL +S+HV +
Sbjct: 325 CFSRWPTCTIRWYVWWIALPGWISNHVSSI 414
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.142 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,020,964
Number of Sequences: 63676
Number of extensions: 86094
Number of successful extensions: 557
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of query: 114
length of database: 12,639,632
effective HSP length: 90
effective length of query: 24
effective length of database: 6,908,792
effective search space: 165811008
effective search space used: 165811008
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC149307.10