TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149305.9 - phase: 0 /pseudo
         (136 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM891241                                                               49  1e-06
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A...    44  3e-05
CF922212                                                               43  5e-05
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript...    42  7e-05
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym...    39  6e-04
AI496436                                                               36  0.005
CO982349                                                               34  0.024
BM891637                                                               33  0.042
TC212765                                                               31  0.16
BM309783                                                               31  0.21
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret...    30  0.27
BI972659                                                               30  0.35
BI698930                                                               29  0.78
AW733315                                                               26  5.1
TC233846                                                               26  5.1
TC235103 similar to UP|Q6NKU9 (Q6NKU9) At5g55510, partial (9%)         26  6.6
TC207529 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial...    25  8.7
BU761195                                                               25  8.7

>BM891241 
          Length = 407

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = -2

Query: 82  NKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
           +K +  V W+ +   K  GGLG++ + K NIALLGK +W L      LW++I+++
Sbjct: 391 HKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227


>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
           thaliana;} , partial (18%)
          Length = 759

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = +2

Query: 37  RVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STNKG-MNMVGWDKITK 95
           RV L+ SVL+++P   +    +   I  +D L      F+   + +   +  V W  I  
Sbjct: 11  RVTLIKSVLSALPIXXLSFFKIPQRI--VDKLVTLQRQFLWGGTQHHNRIPWVKWADICN 184

Query: 96  AKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQI 133
            K +GGLG++ +   N AL G+ +W L    N LW+++
Sbjct: 185 PKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298


>CF922212 
          Length = 445

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 22/54 (40%), Positives = 30/54 (54%)
 Frame = -2

Query: 83  KGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
           K +  V WD +   K+  GLG R +RK N ALLGK  WNL      L +++L +
Sbjct: 369 KKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKRRWNLFHHQGELGARVLDS 208


>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
           (Fragment) , partial (59%)
          Length = 1077

 Score = 42.4 bits (98), Expect = 7e-05
 Identities = 29/90 (32%), Positives = 46/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 23  KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
           KL+ WK R ++   RV L+ SVLTSIP Y      +     V+D L K   +F+     +
Sbjct: 673 KLSKWK*RHISFGGRVTLIKSVLTSIPIYFFSFFRVPQ--SVVDKLVKI*RTFLWGGGPD 846

Query: 83  -KGMNMVGWDKITKAKKNGGLGVRVVRKQN 111
            K ++ + W+K+   K+ GG+  R+    N
Sbjct: 847 QKKISWIRWEKLCLPKERGGI*KRLPNNHN 936


>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
           homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
          Length = 456

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 17/49 (34%), Positives = 26/49 (52%)
 Frame = +2

Query: 88  VGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
           V W  +   K  GGLG++ +R  N  LLGK  W+L       W+++L +
Sbjct: 104 VNWKTVCLPKAKGGLGIKDLRTFNTTLLGKWRWDLFYIQQEPWAKVLQS 250


>AI496436 
          Length = 414

 Score = 36.2 bits (82), Expect = 0.005
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 23  KLASWKCRLLNKPSRVILVNSVLTSIPAY 51
           KLASWK + ++   RV L+NSVLT++P Y
Sbjct: 220 KLASWKQKYVSFGGRVTLINSVLTALPIY 306


>CO982349 
          Length = 795

 Score = 33.9 bits (76), Expect = 0.024
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 23  KLASWKCRLLNKPSRVILVNSVLTSIPAY 51
           KLA WK R ++   RV L+N++LT++P Y
Sbjct: 576 KLARWKQRHISLGGRVTLINAILTALPIY 662


>BM891637 
          Length = 427

 Score = 33.1 bits (74), Expect = 0.042
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 83  KGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
           K +  + W +   +   GGLG++ ++  N ALL K  W +    + LW++IL
Sbjct: 418 KKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRIL 263


>TC212765 
          Length = 637

 Score = 31.2 bits (69), Expect = 0.16
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 17  CGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQ 54
           CG     LASWK +LLN+ S+  L   VL + P Y M+
Sbjct: 395 CGAHP*PLASWKGKLLNQASKHCLT*LVLHAFPIYPME 508


>BM309783 
          Length = 433

 Score = 30.8 bits (68), Expect = 0.21
 Identities = 15/49 (30%), Positives = 25/49 (50%)
 Frame = +2

Query: 86  NMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
           ++VGW  +     +GG+G+  +   N A L K+ W   M    LW+ +L
Sbjct: 35  HVVGWKAMIMP*HSGGVGMCDLTIMNQACLMKIGWAFRMGDGSLWADVL 181


>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
           reverse transcriptase, partial (7%)
          Length = 956

 Score = 30.4 bits (67), Expect = 0.27
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 23  KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH 56
           KLASWK  +L+   R+ LVNSV+  +  Y   ++
Sbjct: 160 KLASWKGSILSIMGRIQLVNSVIHGMLLYSFSVY 59


>BI972659 
          Length = 453

 Score = 30.0 bits (66), Expect = 0.35
 Identities = 19/68 (27%), Positives = 32/68 (46%)
 Frame = +1

Query: 23  KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
           KL+ W  + L+   RV L+ SVL ++P Y +    +   I  +D L     +F+     N
Sbjct: 259 KLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRI--VDKLVSLQRTFM--WGGN 426

Query: 83  KGMNMVGW 90
           +  N + W
Sbjct: 427 QHHNRISW 450


>BI698930 
          Length = 384

 Score = 28.9 bits (63), Expect = 0.78
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 24  LASWKCRLLNKPSRVILVNSVLTSIPAY 51
           LA WK  +L+   R  L+NS+L+S+P +
Sbjct: 81  LALWKHEVLSFAGRTCLINSMLSSLPLF 164


>AW733315 
          Length = 333

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +2

Query: 9   IFKLISLVCGFLINKLASW 27
           +FK+I L C  L+ KL SW
Sbjct: 257 LFKIILLYCSILLPKLLSW 313


>TC233846 
          Length = 424

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 112 IALLGKLVWNLLMPTNHLWS 131
           I+LLGKLVW L+   + +W+
Sbjct: 289 ISLLGKLVWTLVSGCSTVWA 230


>TC235103 similar to UP|Q6NKU9 (Q6NKU9) At5g55510, partial (9%)
          Length = 872

 Score = 25.8 bits (55), Expect = 6.6
 Identities = 12/31 (38%), Positives = 20/31 (63%)
 Frame = -2

Query: 4   NHFNIIFKLISLVCGFLINKLASWKCRLLNK 34
           N+ N+  K I  +  FL+NKL +++ RL+ K
Sbjct: 556 NNKNVQEKKIKYIFFFLVNKLHTYRDRLIQK 464


>TC207529 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial (82%)
          Length = 1265

 Score = 25.4 bits (54), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 23  KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYIC 63
           +L    C  L  PSR+   N  + SI A+ + + *   Y+C
Sbjct: 237 RLCKKDC*RLEAPSRLCNTNCSINSITAFGVSVL*RPGYVC 359


>BU761195 
          Length = 472

 Score = 25.4 bits (54), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (65%)
 Frame = -3

Query: 56  H*LAHYICVIDHLNKTVHSFI 76
           H +  YIC++ H+   +HSFI
Sbjct: 143 HHIYIYICILPHIYIPIHSFI 81


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.337    0.146    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,283,781
Number of Sequences: 63676
Number of extensions: 93864
Number of successful extensions: 865
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of query: 136
length of database: 12,639,632
effective HSP length: 87
effective length of query: 49
effective length of database: 7,099,820
effective search space: 347891180
effective search space used: 347891180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (25.4 bits)