BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149305.8 - phase: 0 /pseudo
(439 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 45 5e-05
TC215821 similar to UP|Q9LW00 (Q9LW00) Arabidopsis thaliana geno... 37 0.023
BU578205 similar to GP|5081555|gb|A PHAP2A protein {Petunia x hy... 35 0.067
TC227874 weakly similar to UP|O22670 (O22670) Ag13 protein precu... 35 0.067
TC232906 35 0.067
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 35 0.067
TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%) 35 0.067
TC216132 weakly similar to UP|Q9M3V1 (Q9M3V1) Protein phpsphatas... 35 0.087
BU926431 34 0.11
TC218646 weakly similar to UP|Q9FRR1 (Q9FRR1) F22O13.26 (Prenyla... 33 0.19
TC225797 weakly similar to UP|Q8S8A5 (Q8S8A5) Expressed protein,... 33 0.25
CF922367 33 0.33
TC214499 similar to UP|Q9VL49 (Q9VL49) CG4758-PB, partial (5%) 33 0.33
TC215822 similar to UP|Q9LW00 (Q9LW00) Arabidopsis thaliana geno... 32 0.43
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 32 0.43
TC217235 similar to UP|Q9LW88 (Q9LW88) Arabidopsis thaliana geno... 32 0.57
TC216649 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanas... 32 0.57
TC225798 similar to UP|Q6RSS0 (Q6RSS0) Peml (Fragment), partial ... 32 0.57
TC209673 weakly similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP... 32 0.74
TC219974 weakly similar to PIR|T47938|T47938 RING finger protein... 31 0.97
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 45.4 bits (106), Expect = 5e-05
Identities = 51/201 (25%), Positives = 102/201 (50%), Gaps = 23/201 (11%)
Frame = +3
Query: 57 KKKKNDQSPRKTVLCKC------GENDDGSKCVCEAYRNLRESQEGFFEKENFFDGEE-- 108
KKK+N KT + K GE+D+ K E + ++ ++G + E E+
Sbjct: 48 KKKENKDKGDKTDVEKVKGKENDGEDDEEKK---EKKKKEKKDKDGKTDAEKIKKKEDDG 218
Query: 109 KNDEEKGENVLE-EVIEANLII------HDIGNEERKIDEE-EGVEEENEEKGNCSSMVK 160
K+DEEK E + + I+A + D GN+E+K E+ +G EE +EK + K
Sbjct: 219 KDDEEKKEKKKKYDKIDAXKVKGKEDDGKDEGNKEKKDKEKGDGDGEEKKEKKD-KEKEK 395
Query: 161 RRREKVMEEARNSVPENGKVMHLV--KAFERLLSIKKEKEKN-----EEEEENDKKNKVM 213
++ +K +E +++ E GK + ++ KKEKEK+ +++EE +K++ +
Sbjct: 396 KKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKKDKKEKEKDHKKEKKDKEEGEKEDSKV 575
Query: 214 KWALPGLQFQQPVKDGDEQSE 234
+ ++ + ++ K+G+++ +
Sbjct: 576 EVSVRDIDIEEIKKEGEKEDK 638
Score = 41.2 bits (95), Expect = 0.001
Identities = 42/168 (25%), Positives = 77/168 (45%)
Frame = +3
Query: 26 QKSLTKGDNNCVNVVVVSPQKRIRQRKFVVAKKKKNDQSPRKTVLCKCGENDDGSKCVCE 85
+K KGD + +K+ ++ K KK+K D+ L + G+ND+G E
Sbjct: 324 KKDKEKGDGD-------GEEKKEKKDKEKEKKKEKKDKDEETDTLKEKGKNDEG-----E 467
Query: 86 AYRNLRESQEGFFEKENFFDGEEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGV 145
++ ++ EKE +EK D+E+GE +E + + + DI EE K + E+
Sbjct: 468 DDEGNKKKKKDKKEKEKDHK-KEKKDKEEGE---KEDSKVEVSVRDIDIEEIKKEGEK-- 629
Query: 146 EEENEEKGNCSSMVKRRREKVMEEARNSVPENGKVMHLVKAFERLLSI 193
E++ ++ G K++ +K +E + V K L ++L I
Sbjct: 630 EDKGKDGGKEVKEKKKKEDKDKKEKKKKVTGKDKTKDLSTLKQKLEKI 773
>TC215821 similar to UP|Q9LW00 (Q9LW00) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MSJ11, partial (40%)
Length = 1145
Score = 36.6 bits (83), Expect = 0.023
Identities = 40/167 (23%), Positives = 67/167 (39%), Gaps = 4/167 (2%)
Frame = +2
Query: 43 SPQKRIRQRKFVVAKKKKNDQSPRKTVLCKCGENDDGSKCVCEAYRNLRESQEGFFEKEN 102
+P+KR R+ KK N ++ + K + K E N + G + EN
Sbjct: 362 TPKKRARKSS---GSKKDNKETESASEEGKAKSETEDPKAAEEEEDNEGNNDSGGKQLEN 532
Query: 103 FFDGEEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEE----EGVEEENEEKGNCSSM 158
E+ +++ K +V E + N + + N+ +I E V E E +
Sbjct: 533 GDKTEQIDEKAKKSDVDMEETDLNDTNNKLENDSAEIKNSHVKGENVITEKPEGEEAQKL 712
Query: 159 VKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEKNEEEEE 205
EKV EEA ++ G LL+ + EKE+NEE+ +
Sbjct: 713 EIEPAEKVAEEAADTEKSQGP----------LLTTELEKEENEEKTD 823
>BU578205 similar to GP|5081555|gb|A PHAP2A protein {Petunia x hybrida},
partial (6%)
Length = 409
Score = 35.0 bits (79), Expect = 0.067
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 93 SQEGFFEKENFFDGEEKNDEEKGENV--LEEVIEANLIIHDIGNEERKIDEEEGVEEENE 150
S+EG + DG++ + KG+ V + + ++I D G+EE ++DEEE EE++E
Sbjct: 208 SEEGCSSLKTSIDGDDMINNNKGKRVGSVSNSSSSAVVIED-GSEE-EVDEEEEEEEDDE 381
Query: 151 EKGNCSSM 158
E G SM
Sbjct: 382 EGGVGRSM 405
>TC227874 weakly similar to UP|O22670 (O22670) Ag13 protein precursor,
partial (21%)
Length = 894
Score = 35.0 bits (79), Expect = 0.067
Identities = 27/113 (23%), Positives = 52/113 (45%)
Frame = +1
Query: 58 KKKNDQSPRKTVLCKCGENDDGSKCVCEAYRNLRESQEGFFEKENFFDGEEKNDEEKGEN 117
K+++ ++PR + +K V E + +QE EK+ +G ++N +
Sbjct: 214 KEESTEAPRPAASEDKPSVEVQTKEVAEEVVSETVTQEPTVEKQEAAEGTKENADPAEIK 393
Query: 118 VLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEA 170
E + N + + E + EEE E++EEK +++ E+V+EEA
Sbjct: 394 TPEAAEDVN--VKEEKEAEAEAKEEEAPAEKSEEKVETEGSAEKKEEEVIEEA 546
>TC232906
Length = 871
Score = 35.0 bits (79), Expect = 0.067
Identities = 41/162 (25%), Positives = 62/162 (37%), Gaps = 6/162 (3%)
Frame = +1
Query: 57 KKKKNDQSPRKTVLCKCGENDDG-----SKCVCEAYRNLRESQEGFFEKENFFDGEEKND 111
K+KK + +K + END K C + ES E F E+ +
Sbjct: 352 KEKKVKKGTQKCPVAVPHENDTSHMEIDEKSRCGSLEGCHESGTSGSGGELSFGDEKSHK 531
Query: 112 EEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEAR 171
+GE+ + + EA+ DI + +EE E +E EE +
Sbjct: 532 STRGESSVPVLTEASR--SDITSLSSLNNEENKTTERSEN----------------EETK 657
Query: 172 NSVPENGKVMHLVKAFERLLSIKKEKEKNEEE-EENDKKNKV 212
NSV GKV K S+ + +NE + END+K V
Sbjct: 658 NSVSNKGKVSVAKKRKAEENSLASDDRENERQLTENDEKENV 783
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 35.0 bits (79), Expect = 0.067
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 1/159 (0%)
Frame = +1
Query: 57 KKKKNDQSPRKTVLCKC-GENDDGSKCVCEAYRNLRESQEGFFEKENFFDGEEKNDEEKG 115
K++K + RK+V K GE + A + + SQ G +K++ D E+ E
Sbjct: 922 KEQKGKKRTRKSVPSKSPGE----ASTETPAKKQKQTSQSGKKQKQSSDDDEDDKAELSD 1089
Query: 116 ENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEARNSVP 175
+ + E D+ + D+EE EE EEK S KR +K ++E+
Sbjct: 1090 AKGVSQEDE------DVAVPNNESDDEESRSEEEEEK---SKSRKRTSKKAVKESS---- 1230
Query: 176 ENGKVMHLVKAFERLLSIKKEKEKNEEEEENDKKNKVMK 214
V +R S+KK K+ + E KK K
Sbjct: 1231 --------VSKADRTSSVKKTPVKDAKSIEKTKKKPTSK 1323
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/71 (30%), Positives = 31/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 99 EKENFFDGEEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENE----EKGN 154
+ EN G++ + V EE A +I + + DE+E EEE+E EK
Sbjct: 223 KSENANAGDKDGGAAGNQEVEEEADAAEEKKEEIDEDGEEKDEQEEKEEEDEAEEKEKEK 402
Query: 155 CSSMVKRRREK 165
KRRR K
Sbjct: 403 AKGKGKRRRSK 435
>TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%)
Length = 490
Score = 35.0 bits (79), Expect = 0.067
Identities = 36/137 (26%), Positives = 65/137 (47%)
Frame = +1
Query: 49 RQRKFVVAKKKKNDQSPRKTVLCKCGENDDGSKCVCEAYRNLRESQEGFFEKENFFDGEE 108
+++K KK+K D+ L + G+ND+G E ++ ++ EKE +E
Sbjct: 160 KEKKEKEKKKEKKDKDEETDTLKEKGKNDEG-----EDDEGNKKKKKDKKEKEKDHK-KE 321
Query: 109 KNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVME 168
K D E+GE + +EA+ + DI EE+K+ ++K S +K++ EK+
Sbjct: 322 KKDIEEGEKE-DSKVEAS--VRDIDIEEKKV--------TGKDKTKDLSTLKQKLEKI-- 462
Query: 169 EARNSVPENGKVMHLVK 185
NGK+ L++
Sbjct: 463 --------NGKIQPLLE 489
Score = 25.4 bits (54), Expect(2) = 1.3
Identities = 9/21 (42%), Positives = 16/21 (75%)
Frame = +1
Query: 194 KKEKEKNEEEEENDKKNKVMK 214
KKEKEK +E+++ D++ +K
Sbjct: 166 KKEKEKKKEKKDKDEETDTLK 228
Score = 23.9 bits (50), Expect(2) = 1.3
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Frame = +3
Query: 100 KENFFDGEEKNDEEKG--ENVLEEVIEANLIIHDIGNEERKID--EEEGVEEENEEKG 153
K+ DGEEK +EK E +E + + + + + + EEG E E EEKG
Sbjct: 18 KDKGEDGEEKEKKEKDKKEKKKKEKKDKDEETDTLKGKGKNGEW*REEGKEREGEEKG 191
>TC216132 weakly similar to UP|Q9M3V1 (Q9M3V1) Protein phpsphatase 2C (PP2C)
, partial (27%)
Length = 776
Score = 34.7 bits (78), Expect = 0.087
Identities = 28/110 (25%), Positives = 52/110 (46%), Gaps = 5/110 (4%)
Frame = +1
Query: 111 DEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEA 170
DE G V+++ EA + IHD +E + + + E E+ K +S+ RRR+ ME++
Sbjct: 322 DESTGHKVVKK--EAKVEIHDNISETKNVTVADASEVEDSPKFGVTSVCGRRRD--MEDS 489
Query: 171 RNSVPENGKVMHLVKAFE-----RLLSIKKEKEKNEEEEENDKKNKVMKW 215
+ P + H F+ + ++ KE+ EE D + ++W
Sbjct: 490 VSVRPSFTQGFHYFGVFDGHGCSHVATMCKERLHEIVNEEIDSARQNLEW 639
>BU926431
Length = 457
Score = 34.3 bits (77), Expect = 0.11
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Frame = +3
Query: 107 EEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKV 166
+E N EK E EE + N + D + EEEG E E+EEKG+ + E+
Sbjct: 42 DEVNQNEKHE---EEEEDDN--VEDAYKHDHNEHEEEGNEHESEEKGDKRGVRGGGSEQE 206
Query: 167 MEEARNS------------VPENGKVMHLVKA--FERLLSIKKEKEKNEEEEENDK 208
+E +++ + EN + V E +KE+E +E+E+EN +
Sbjct: 207 EDENKSNEVEDQRGGGDDEIDENDQEQSAVDTDHDEEFTDEEKEEESDEKEKENSR 374
>TC218646 weakly similar to UP|Q9FRR1 (Q9FRR1) F22O13.26 (Prenylated Rab
receptor 4) (At1g08770), partial (62%)
Length = 1127
Score = 33.5 bits (75), Expect = 0.19
Identities = 26/103 (25%), Positives = 47/103 (45%)
Frame = -2
Query: 49 RQRKFVVAKKKKNDQSPRKTVLCKCGENDDGSKCVCEAYRNLRESQEGFFEKENFFDGEE 108
+QR F+V KK+ +P+++V DD + EA G+E
Sbjct: 613 KQRTFLV--KKQILGNPKRSVQANENHRDD*REQDVEAD----------------VSGDE 488
Query: 109 KNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEE 151
+ND E+ +N + L+ +D G+ R+++ G E+E E+
Sbjct: 487 RNDSEQSQNAEHGSVVEGLVENDEGDVAREVEVVPGDEDEEED 359
>TC225797 weakly similar to UP|Q8S8A5 (Q8S8A5) Expressed protein, partial
(28%)
Length = 695
Score = 33.1 bits (74), Expect = 0.25
Identities = 28/88 (31%), Positives = 40/88 (44%), Gaps = 1/88 (1%)
Frame = -1
Query: 140 DEEEGVEEENEEKGNCSSMVKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEK 199
+EE G+ EE E V EKV E+ +PENGK+ ER + K+
Sbjct: 263 EEELGLVEEAEAVAKVVEKVATVAEKVSEDVAEMLPENGKLRKAALVVER--ASKEAAHD 90
Query: 200 NEEEEENDKKNKVMKWALPGLQ-FQQPV 226
+ EE K + +K L L+ F +PV
Sbjct: 89 AQLTEEFIHKVEELKNDLDDLEAFVEPV 6
>CF922367
Length = 463
Score = 32.7 bits (73), Expect = 0.33
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -2
Query: 135 EERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIK 194
+ ++I + E + +EKGN S R+++ EE NS +NG+ K + S +
Sbjct: 384 KRKEIPNQRVGESKKKEKGNSQSKNGRKQK---EEKGNSQSKNGRKQKEKKGNSQSKSGR 214
Query: 195 KEKE-KNEEEEENDKKNKVMK 214
K+KE K + ++ +K K K
Sbjct: 213 KQKEKKGNSQSKSGRKQKEKK 151
>TC214499 similar to UP|Q9VL49 (Q9VL49) CG4758-PB, partial (5%)
Length = 708
Score = 32.7 bits (73), Expect = 0.33
Identities = 17/45 (37%), Positives = 28/45 (61%)
Frame = +2
Query: 135 EERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEARNSVPENGK 179
+ERK +E +E+ E+KGN S R+++ E+ NS P+NG+
Sbjct: 476 KERKFPIKEWEKEKKEKKGNSQSKSGRKKK---EKKENSQPKNGR 601
>TC215822 similar to UP|Q9LW00 (Q9LW00) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MSJ11, partial (23%)
Length = 1135
Score = 32.3 bits (72), Expect = 0.43
Identities = 41/168 (24%), Positives = 66/168 (38%), Gaps = 5/168 (2%)
Frame = +2
Query: 43 SPQKRIRQRKFVVAKKKKNDQSPRKTVLCKCGENDDGSKCVCEAYRNLRE-SQEGFFEKE 101
+P+KR R+ KK N ++ + K + + K E + S G + E
Sbjct: 164 TPKKRARKSS---GSKKDNKETESASEEGKAKSDTEDPKAAEEEKNEGNDNSNSGGKQLE 334
Query: 102 NFFDGEEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEE----EGVEEENEEKGNCSS 157
N E+ +++ K +V E + N + + N+ +I E V E E
Sbjct: 335 NGDKTEQIDEQAKKPDVDMEENDLNDTNNKLENDSDEIKNSHVNGENVIAERPEGEEAQK 514
Query: 158 MVKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEKNEEEEE 205
EKV EEA N+ E+ L + EKEKNEE+ +
Sbjct: 515 QEVEPAEKVAEEAANTAET-----------EKSLLTELEKEKNEEKTD 625
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 32.3 bits (72), Expect = 0.43
Identities = 20/54 (37%), Positives = 27/54 (49%)
Frame = +1
Query: 101 ENFFDGEEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGN 154
+N ++ +EEK E EE E EE + +EEE EEE EE+GN
Sbjct: 1 DNVLSDTQEEEEEKEEEEEEEEEEEE--------EEEEEEEEEEKEEEEEEEGN 138
Score = 31.6 bits (70), Expect = 0.74
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +1
Query: 128 IIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEEARNSVPENGKVMHLVKAF 187
++ D EE + +EEE EEE EE + E+ EE E G V+ ++
Sbjct: 7 VLSDTQEEEEEKEEEEEEEEEEEE--------EEEEEEEEEEKEEEEEEEGNVLVII--- 153
Query: 188 ERLLSIKKEKEKNEEEEENDKKNKVMK 214
+++K++ EE N K +K
Sbjct: 154 --------DEDKHDTEELNKKCEDFIK 210
>TC217235 similar to UP|Q9LW88 (Q9LW88) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MSL1, partial (36%)
Length = 1253
Score = 32.0 bits (71), Expect = 0.57
Identities = 28/113 (24%), Positives = 48/113 (41%)
Frame = +1
Query: 99 EKENFFDGEEKNDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSM 158
+ E DGE K E K +++ E+ EE D+E E+E+ + S
Sbjct: 31 DSEKAGDGEAKQPESKTNEAEDKLTESK-----DAAEESNADKEHTAEKESTDD---ESK 186
Query: 159 VKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEKNEEEEENDKKNK 211
V + + K + E+ N ++ E + KEK + ++ END KN+
Sbjct: 187 VDKEQNKDVTESGNEDKKDATHN------ESASKLDKEKTGDGKDSENDDKNE 327
>TC216649 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanase 26B,
partial (7%)
Length = 470
Score = 32.0 bits (71), Expect = 0.57
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Frame = -3
Query: 110 NDEEKGENVLEEVIEANLIIHDIGNEERKIDEEEGVEEENEEKGNCSSMVKRRREKVMEE 169
+DEE + L + + + D+ + D+E EE +EK S KR +K ++E
Sbjct: 426 DDEEDDKAELSDAKDVSQEDEDVAVPNNESDDERSKSEEQKEK---SKSHKRTSKKSVKE 256
Query: 170 ARNSVPENGKVMHL----VKAFERLLSIKKEKEKNEEEEENDKKNKVMKWALPGLQFQQP 225
NSV + + VK + + IKK+ + E+D + +K P + Q+
Sbjct: 255 --NSVSKADRTSSAKKTPVKDAKSIEKIKKKTTSKKSVAEHDSASASVKSKQPASKKQKT 82
Query: 226 VKD 228
V +
Sbjct: 81 VSE 73
>TC225798 similar to UP|Q6RSS0 (Q6RSS0) Peml (Fragment), partial (9%)
Length = 1196
Score = 32.0 bits (71), Expect = 0.57
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 141 EEEGVEEENEEKGNCSSMVKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEKN 200
E E V EE E V EKV E+ +PENGK+ ER + K+
Sbjct: 400 EAEFVVEEAEAVAKVVEKVATVAEKVSEDVAEMLPENGKLRKAALVVER--ASKEAAHDA 573
Query: 201 EEEEENDKKNKVMKWALPGLQ-FQQPVKD 228
+ EE K + +K L L+ F +PV D
Sbjct: 574 QLTEEFIHKVEELKNDLDDLEAFVEPVID 660
>TC209673 weakly similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial
(27%)
Length = 650
Score = 31.6 bits (70), Expect = 0.74
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +3
Query: 107 EEKNDEEKGENVLEE-VIEANLIIHDIGNEERK-IDEEEGVEEENEEKGNCSSMVKRRRE 164
EEK +EEK E E V++ ++ + K + +GVEE + + +VK +
Sbjct: 297 EEKKEEEKKEEPPPEIVLKVDMHCEACARKVAKALKGFQGVEEVSADSRTSKVVVKGKAA 476
Query: 165 KVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEKNEEEEENDK 208
++ ++GK + L+ + KKE K E +E K
Sbjct: 477 DPIKVCERLQKKSGKKVELISPLPKPPEEKKEPPKEEPPKEEKK 608
>TC219974 weakly similar to PIR|T47938|T47938 RING finger protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(64%)
Length = 690
Score = 31.2 bits (69), Expect = 0.97
Identities = 32/104 (30%), Positives = 45/104 (42%), Gaps = 7/104 (6%)
Frame = -1
Query: 106 GEEKNDEEKGENVL------EEVIEANLIIHDIGN-EERKIDEEEGVEEENEEKGNCSSM 158
GEE DEE GE+ L EV + + ++G+ EE + E+EG + E K
Sbjct: 336 GEELADEEGGESRLAWRRRRREVRGGGIGVEEVGDAEEAEEGEDEGAQPREEGK------ 175
Query: 159 VKRRREKVMEEARNSVPENGKVMHLVKAFERLLSIKKEKEKNEE 202
R E+ + VP GK + R L KK K K +E
Sbjct: 174 ---RVEEHFRNQQLRVP-YGKTHRRARETIRALFFKKNKIKMDE 55
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.149 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,809,934
Number of Sequences: 63676
Number of extensions: 286410
Number of successful extensions: 3399
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 3083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3273
length of query: 439
length of database: 12,639,632
effective HSP length: 100
effective length of query: 339
effective length of database: 6,272,032
effective search space: 2126218848
effective search space used: 2126218848
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC149305.8