BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149305.6 - phase: 0 /pseudo/partial
(543 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211865 weakly similar to UP|Q7F266 (Q7F266) Nipped-B gene prod... 361 e-100
TC229499 49 7e-06
TC223375 weakly similar to UP|Q9Y3Q5 (Q9Y3Q5) PLU-1 protein, par... 41 0.001
TC223468 similar to GB|AAS92337.1|46402470|BT012421 At5g24330 {A... 35 0.11
TC215570 similar to GB|AAP21327.1|30102818|BT006519 At3g53980 {A... 33 0.25
TC218861 similar to UP|Q8L9Y9 (Q8L9Y9) PGPD14 protein, partial (... 32 0.72
TC206504 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragme... 32 0.72
TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI... 32 0.94
TC221803 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI... 31 1.2
TC232709 weakly similar to UP|Q9LZJ6 (Q9LZJ6) RING-H2 zinc finge... 31 1.6
TC220941 weakly similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 pro... 31 1.6
TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%) 31 1.6
AW317202 weakly similar to GP|20160647|dbj P0446G04.15 {Oryza sa... 30 2.1
TC230215 weakly similar to UP|Q6I656 (Q6I656) RING zinc finger p... 30 2.1
TC203437 homologue to UP|RCA_CUCSA (Q01587) Ribulose bisphosphat... 30 2.1
TC217431 similar to GB|AAN18131.1|23308323|BT000562 At5g09390/T5... 30 2.7
TC208731 30 2.7
TC234023 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (26%) 30 3.6
TC208025 weakly similar to UP|Q84MB7 (Q84MB7) At3g62970, partial... 30 3.6
TC220915 weakly similar to GB|AAP37872.1|30725700|BT008513 At2g2... 29 4.7
>TC211865 weakly similar to UP|Q7F266 (Q7F266) Nipped-B gene product-like
protein, partial (6%)
Length = 871
Score = 361 bits (926), Expect = e-100
Identities = 173/226 (76%), Positives = 191/226 (83%)
Frame = +2
Query: 1 MAIDILGTIAARLKRDAVICSQEKFWVLQDLLSEDAAPQHYPKDTCCVCLGGRVENLFKC 60
+AIDILGTIAARLKRDA++CSQEKFW+LQDLL++DAA QH+PKDTCCVCLGGRVENLF C
Sbjct: 8 LAIDILGTIAARLKRDALVCSQEKFWILQDLLNQDAAAQHHPKDTCCVCLGGRVENLFIC 187
Query: 61 SGCDRLFHADCLDVKENEVPNRNWYCLMCICSKQLLVLQSYCNSQRKDDAKKNRKVSKDD 120
GC RLFHADCL +KE+EV +RNW C CIC K+LLVLQS CNSQ+K+D KKN D
Sbjct: 188 HGCQRLFHADCLGIKEHEVSSRNWSCQTCICHKKLLVLQSCCNSQQKNDVKKN---CNTD 358
Query: 121 STFSNHEIVQQLLLNYFQDVTSADDLHHFICWFYLCSWYKNDPKCQQKPIYYFARMKSRT 180
S S EIVQQLLLNY QDVTSADDLH FICWFYLC WYK+D CQQK YY ARMKS+
Sbjct: 359 SEVSKQEIVQQLLLNYLQDVTSADDLHLFICWFYLCLWYKDDSNCQQKSSYYLARMKSKI 538
Query: 181 IVRDSGSVSSMLTRDSIKKITLALGQNSSFCRGFDKIFHTLLVSLK 226
IVRDSG+VSS+LTRDSIKKIT ALGQNSSFCRGFDKI HTLL + K
Sbjct: 539 IVRDSGTVSSILTRDSIKKITSALGQNSSFCRGFDKILHTLLATNK 676
>TC229499
Length = 915
Score = 48.5 bits (114), Expect = 7e-06
Identities = 28/117 (23%), Positives = 54/117 (45%), Gaps = 11/117 (9%)
Frame = +1
Query: 42 PKDTCCVCLGGRVEN-LFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICSKQLL--VL 98
P C VCL + +N + C CD +H C+ +N +P W+C+ C Q +
Sbjct: 340 PSCICQVCLTDKDDNKIVLCDACDHAYHVYCMKPPQNSIPKGKWFCIKCEAGIQAIRQAR 519
Query: 99 QSYCNSQRK---DDAKKNRKVSKDDSTFSNHEI-----VQQLLLNYFQDVTSADDLH 147
++Y +++ K +D+K N + K + E + +L+N + S +D++
Sbjct: 520 KAYESNKGKVGQNDSKPNEDIDKKWNKKRGRESDKVGGMMDMLINAANTLNSEEDMN 690
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/47 (29%), Positives = 21/47 (43%), Gaps = 1/47 (2%)
Frame = +1
Query: 46 CCVCLGGRVENLFKCSGC-DRLFHADCLDVKENEVPNRNWYCLMCIC 91
C + + G + S C + +H CL K+ + WYC CIC
Sbjct: 214 CKMAVDGEKVKICGHSFCPSKYYHVSCLSSKQLKSYGHCWYCPSCIC 354
>TC223375 weakly similar to UP|Q9Y3Q5 (Q9Y3Q5) PLU-1 protein, partial (3%)
Length = 690
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +3
Query: 46 CCVCLGGRVEN-LFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICSKQLL--VLQSY- 101
C VCL + ++ + C GCD +H C+ +P NW+C C Q + ++Y
Sbjct: 3 CRVCLTDQDDDRIVLCDGCDHAYHIYCMKPPRTSIPRGNWFCRKCDAGIQAIHQAKKAYE 182
Query: 102 CNSQRK---DDAKKNRKVSK 118
N R+ D AK N + K
Sbjct: 183 FNKPRRNGEDAAKPNANLEK 242
>TC223468 similar to GB|AAS92337.1|46402470|BT012421 At5g24330 {Arabidopsis
thaliana;} , partial (33%)
Length = 507
Score = 34.7 bits (78), Expect = 0.11
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 1/46 (2%)
Frame = +2
Query: 45 TCCVCLGGRVEN-LFKCSGCDRLFHADCLDVKENEVPNRNWYCLMC 89
+C C GG + L C CDR +H CL VP +W+C C
Sbjct: 92 SCEECGGGHSPSKLILCDKCDRGYHLFCLRPILPSVPKGSWFCPSC 229
>TC215570 similar to GB|AAP21327.1|30102818|BT006519 At3g53980 {Arabidopsis
thaliana;} , partial (73%)
Length = 679
Score = 33.5 bits (75), Expect = 0.25
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 3/77 (3%)
Frame = +3
Query: 372 STPQTQVFK---DGSTVPLEVAKKTEQIVEMLKRLPNNQLLVTVIKRCLTLDFLPQSAKA 428
+TP + +K S E A ++ +K++ N CL L +AK
Sbjct: 183 TTPDNEAYKLAPCASAAQDENASVSQSCCAQVKKIGQNP-------SCLCAVLLSNTAKM 341
Query: 429 SGVNPVSLVTVRKRCEL 445
+GVNP VT+ KRC L
Sbjct: 342 AGVNPQVAVTIPKRCNL 392
>TC218861 similar to UP|Q8L9Y9 (Q8L9Y9) PGPD14 protein, partial (58%)
Length = 761
Score = 32.0 bits (71), Expect = 0.72
Identities = 13/45 (28%), Positives = 20/45 (43%)
Frame = +1
Query: 19 ICSQEKFWVLQDLLSEDAAPQHYPKDTCCVCLGGRVENLFKCSGC 63
IC + F + +D + Y D C +C G +N F C+ C
Sbjct: 448 ICMGKYFCTICKFFDDDISKNQYHCDECGICRTGGKDNFFHCNRC 582
>TC206504 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(73%)
Length = 1050
Score = 32.0 bits (71), Expect = 0.72
Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 4/63 (6%)
Frame = +3
Query: 57 LFKCSGCDRLFHADCLDVKENEVPN-RNWYCLMCICSKQLLVLQSYCNSQRKD---DAKK 112
+ +C GC FH C+D+ E +++C C Q + S+ S+ D D K+
Sbjct: 471 MVQCEGCTDWFHPACIDMTVEEAKRLDHFFCENCSAEGQKKLQNSHSASRHSDTKVDTKR 650
Query: 113 NRK 115
R+
Sbjct: 651 RRR 659
>TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
finger protein; 17145-17621), partial (34%)
Length = 915
Score = 31.6 bits (70), Expect = 0.94
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 35 DAAPQHYPKDTCCVCLGG--RVENLFKCSGCDRLFHADCLD 73
D + + CC+CLG E + CD FH DC+D
Sbjct: 422 DREESAWDETECCICLGEFRDGEKVKVLPACDHYFHCDCVD 544
>TC221803 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
finger protein; 17145-17621), partial (34%)
Length = 772
Score = 31.2 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 46 CCVCLGG--RVENLFKCSGCDRLFHADCLD 73
CC+CLG E + CD FH DC+D
Sbjct: 465 CCICLGEFRDGEKVKVLPACDHYFHCDCVD 554
>TC232709 weakly similar to UP|Q9LZJ6 (Q9LZJ6) RING-H2 zinc finger protein
ATL5 (At3g62690), partial (19%)
Length = 987
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 2/46 (4%)
Frame = +3
Query: 46 CCVCLGGRVENLFK--CSGCDRLFHADCLDVKENEVPNRNWYCLMC 89
C VCLG VE+ C +FH DC+D + N N C +C
Sbjct: 384 CSVCLGTIVEDTISRVLPNCKHIFHVDCVD----KWFNSNTTCPIC 509
>TC220941 weakly similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 protein,
partial (57%)
Length = 433
Score = 30.8 bits (68), Expect = 1.6
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +2
Query: 409 LVTVIKRCLTLDFLPQSAKASGVNPVSLVTVRKRCEL 445
L+ RCL L AK + +NP + +T+ KRC +
Sbjct: 287 LLKTAPRCLCAVLLSPLAKQAKINPATAITIPKRCNI 397
>TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%)
Length = 502
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 46 CCVCLG--GRVENLFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICS 92
CCVCLG E L + C +FH C+ + N C +C CS
Sbjct: 365 CCVCLGEFELKEELLQIPYCKHVFHISCI----SNWLQSNCTCPLCRCS 499
>AW317202 weakly similar to GP|20160647|dbj P0446G04.15 {Oryza sativa
(japonica cultivar-group)}, partial (22%)
Length = 220
Score = 30.4 bits (67), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 46 CCVCLGG--RVENLFKCSGCDRLFHADCLD 73
CC+C G E + GCD FH DC++
Sbjct: 130 CCICFGEFRAGEKVKVLLGCDHYFHCDCVE 41
>TC230215 weakly similar to UP|Q6I656 (Q6I656) RING zinc finger protein
(Fragment), partial (64%)
Length = 798
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
Frame = +1
Query: 38 PQHYPKDTCCVCLGG-RVENLFKCSGCDRLFHADCLD 73
PQH + CCVCL E+ C C +FH C++
Sbjct: 331 PQH---ECCCVCLTKFEPESEINCLSCGHIFHKVCME 432
>TC203437 homologue to UP|RCA_CUCSA (Q01587) Ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase) (RA) , partial (14%)
Length = 693
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 479 FCLVDPTLCAPASNPSQFVLTLQPYLKTQVKTNLKTYILGSLQCYYALCIELLELMLCI- 537
+C+V P APAS + P+L ++ L ++ + +ELL L+L +
Sbjct: 648 YCVVPPRRPAPASRSLMKRAHIFPFLIMSASCRIRHEAFVQLMAFHFVSLELLTLLLSLK 469
Query: 538 RWMSIS 543
RW +S
Sbjct: 468 RWQIMS 451
>TC217431 similar to GB|AAN18131.1|23308323|BT000562 At5g09390/T5E8_190
{Arabidopsis thaliana;} , partial (64%)
Length = 1524
Score = 30.0 bits (66), Expect = 2.7
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = -3
Query: 121 STFSNHEIVQQLLLNYFQDVTSADDLHHFICWFYLCSWYKNDPKC 165
S+FS H++ N+F + HHFI W + S +K +P C
Sbjct: 265 SSFSIHQV------NFFTLLNICFVHHHFISWLHFLSLWKPNPFC 149
>TC208731
Length = 1075
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/83 (22%), Positives = 36/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 46 CCVCLG-GRVENLFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICSKQLLVLQSYCNS 104
CC+C G + LF+C C + +++ YC + L ++C S
Sbjct: 4 CCMCGDLGFSDQLFQCKAC--------------QFRSQHRYCSNLYPKPESLGTCNWCLS 141
Query: 105 QRKDDAKKNRKVSKDDSTFSNHE 127
QR+D +++ S S+ N++
Sbjct: 142 QREDTKERSTNSSNSSSSIRNND 210
>TC234023 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (26%)
Length = 695
Score = 29.6 bits (65), Expect = 3.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 46 CCVCLG--GRVENLFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICS 92
CCVCLG E + + C +FH +C+ + N C +C CS
Sbjct: 244 CCVCLGEFELKEEVLQIPYCKHVFHFECI----HHWLQSNSTCPLCRCS 378
>TC208025 weakly similar to UP|Q84MB7 (Q84MB7) At3g62970, partial (57%)
Length = 886
Score = 29.6 bits (65), Expect = 3.6
Identities = 16/67 (23%), Positives = 25/67 (36%)
Frame = +3
Query: 23 EKFWVLQDLLSEDAAPQHYPKDTCCVCLGGRVENLFKCSGCDRLFHADCLDVKENEVPNR 82
E F + +D Q + D C +C G EN F C+ C + D +
Sbjct: 357 EYFCNICKFFDDDTGKQQFHCDDCGICRIGGRENYFHCNKCGSCYSTSLRDNHMCVENSM 536
Query: 83 NWYCLMC 89
+C +C
Sbjct: 537 RHHCPIC 557
>TC220915 weakly similar to GB|AAP37872.1|30725700|BT008513 At2g21560
{Arabidopsis thaliana;} , partial (30%)
Length = 691
Score = 29.3 bits (64), Expect = 4.7
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 63 CDRLFHADCLDVKENEVPNRNWYCLMCICSKQLLV------LQSYCNSQRKDDAKKNRKV 116
C ++HA+CL+ +EV + C +C ++ + L++ + + K+ KNR V
Sbjct: 221 CGHVYHAECLESLTSEVNKYDPPCPVCTFGEKYTLKLSEKALKAEMDLKAKNKKSKNRIV 400
Query: 117 SKD 119
+D
Sbjct: 401 DRD 409
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,079,150
Number of Sequences: 63676
Number of extensions: 447315
Number of successful extensions: 3514
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of query: 543
length of database: 12,639,632
effective HSP length: 102
effective length of query: 441
effective length of database: 6,144,680
effective search space: 2709803880
effective search space used: 2709803880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149305.6