TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149305.4 - phase: 0 /partial
         (542 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG508739                                                              244  9e-65
TC210412 weakly similar to UP|Q7F266 (Q7F266) Nipped-B gene prod...    69  5e-12
TC220276 weakly similar to UP|O04238 (O04238) Transcription fact...    29  4.7
TC227782                                                               29  6.1

>BG508739 
          Length = 437

 Score =  244 bits (622), Expect = 9e-65
 Identities = 123/145 (84%), Positives = 134/145 (91%)
 Frame = +1

Query: 246 FNTQVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNSKMAHHLLMNMHEKYPAF 305
           F+  VRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNSK+AHHLLMNM+EKYPAF
Sbjct: 4   FSEHVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNSKLAHHLLMNMNEKYPAF 183

Query: 306 FESCLGDGLQMSFMFMQSIFVSPDENVNHKSQSKIAVSGKGKPEADSLAQSRVGVSRIYK 365
           FES LGDGLQMSFMFMQSI  S  ENV+HK QSK + SGKGKPEA SLAQ+++GVSRIYK
Sbjct: 184 FESRLGDGLQMSFMFMQSICGS-SENVDHKIQSKTSTSGKGKPEAGSLAQAKLGVSRIYK 360

Query: 366 LIRGNRISRNKFMSSIVRKFDNPKW 390
           LIRGNR+SRNKF+SSIVRKFDNP+W
Sbjct: 361 LIRGNRVSRNKFLSSIVRKFDNPRW 435


>TC210412 weakly similar to UP|Q7F266 (Q7F266) Nipped-B gene product-like
           protein, partial (6%)
          Length = 817

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 30/50 (60%), Positives = 40/50 (80%)
 Frame = +1

Query: 493 DDMTSVDLNGTNHQLPDYPLSHNGRLKVKPQAAGFADSFTFSKDDLEKVQ 542
           +DM ++DLNG+NHQL DYPLS+ G  + K  +AG+ D F+F+KDDLEKVQ
Sbjct: 1   NDMRTLDLNGSNHQLTDYPLSYKGSSEAKLHSAGYTDPFSFAKDDLEKVQ 150


>TC220276 weakly similar to UP|O04238 (O04238) Transcription factor, partial
           (6%)
          Length = 538

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/57 (31%), Positives = 27/57 (46%)
 Frame = +3

Query: 433 PLEANFKAWSSSLLQSEGQGTPHGNGMYQRATDETIHSTQGQSMDLNGPFQQNVDVQ 489
           P   NF+A +     + GQG+ H   +    +  T HS Q + M  N P + +V VQ
Sbjct: 3   PQSGNFQAAARGASVAAGQGSSHARNV--PTSGATTHSHQARGMVANQPARPSVLVQ 167


>TC227782 
          Length = 460

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +1

Query: 286 SNSKMAHHLLMNMHEKYPAFFESCLGDGLQMSFMFMQSIFVSPD---ENVNHKSQS---- 338
           +NS M HHLLM+   +      +     + MS + ++++ +SP     ++   S+S    
Sbjct: 226 NNSLMKHHLLMSQTRRLAVLIRAPRSPSVTMSLLSLKTLALSPPW*WTSLKLGSRSLRR* 405

Query: 339 KIAVSGKGKPEAD 351
            +    KGKPE D
Sbjct: 406 TLLWRRKGKPEMD 444


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,028,727
Number of Sequences: 63676
Number of extensions: 297160
Number of successful extensions: 1393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of query: 542
length of database: 12,639,632
effective HSP length: 102
effective length of query: 440
effective length of database: 6,144,680
effective search space: 2703659200
effective search space used: 2703659200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)