TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149305.10 + phase: 0 /pseudo
         (55 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC215338 UP|UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase  (UD...    81  1e-16
TC219598 homologue to UP|UGDH_SOYBN (Q96558) UDP-glucose 6-dehyd...    81  1e-16
TC216468 homologue to UP|Q9FZE1 (Q9FZE1) T1K7.6 protein (At1g265...    69  4e-13
TC203252 similar to GB|BAA11677.1|1181599|CUSPSALG subunit of ph...    25  8.3
TC203261 similar to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI,...    25  8.3
AW279261 similar to GP|1181599|dbj subunit of photosystem I {Cuc...    25  8.3

>TC215338 UP|UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase  (UDP-Glc
           dehydrogenase) (UDP-GlcDH) (UDPGDH) , complete
          Length = 1780

 Score = 81.3 bits (199), Expect = 1e-16
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = +3

Query: 1   MAAIALKFTSTDVTVVDITKSRIVAWYNDQIPIYQPGFDGLVKQCRIKNLFFGTN 55
           MA IALK  S +V VVDI+KSRI AW +DQ+PIY+PG DG+VKQCR KNLFF T+
Sbjct: 117 MAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 281


>TC219598 homologue to UP|UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase
           (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) , partial
           (58%)
          Length = 882

 Score = 81.3 bits (199), Expect = 1e-16
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = +3

Query: 1   MAAIALKFTSTDVTVVDITKSRIVAWYNDQIPIYQPGFDGLVKQCRIKNLFFGTN 55
           MA IALK  S +V VVDI+KSRI AW +DQ+PIY+PG DG+VKQCR KNLFF T+
Sbjct: 96  MAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 260


>TC216468 homologue to UP|Q9FZE1 (Q9FZE1) T1K7.6 protein (At1g26570/T1K7_6),
           partial (25%)
          Length = 574

 Score = 69.3 bits (168), Expect = 4e-13
 Identities = 33/55 (60%), Positives = 39/55 (70%)
 Frame = +2

Query: 1   MAAIALKFTSTDVTVVDITKSRIVAWYNDQIPIYQPGFDGLVKQCRIKNLFFGTN 55
           MA IALK    +V VVDI   RI AW +D +PIY+PG D +VKQCR KNLFF T+
Sbjct: 182 MAVIALKCPEIEVVVVDIAAPRINAWNSDHLPIYEPGLDDVVKQCRGKNLFFSTD 346


>TC203252 similar to GB|BAA11677.1|1181599|CUSPSALG subunit of photosystem I
           {Cucumis sativus;} , partial (80%)
          Length = 823

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 8/26 (30%), Positives = 15/26 (56%)
 Frame = +1

Query: 18  ITKSRIVAWYNDQIPIYQPGFDGLVK 43
           +T S ++AWY   +P Y+     L++
Sbjct: 223 VTSSPLIAWYLSNLPAYRTAVSPLLR 300


>TC203261 similar to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI, partial
           (88%)
          Length = 997

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 8/26 (30%), Positives = 15/26 (56%)
 Frame = +1

Query: 18  ITKSRIVAWYNDQIPIYQPGFDGLVK 43
           +T S ++AWY   +P Y+     L++
Sbjct: 421 VTSSPLIAWYLSNLPAYRTAVSPLLR 498


>AW279261 similar to GP|1181599|dbj subunit of photosystem I {Cucumis
          sativus}, partial (52%)
          Length = 346

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 8/26 (30%), Positives = 15/26 (56%)
 Frame = +2

Query: 18 ITKSRIVAWYNDQIPIYQPGFDGLVK 43
          +T S ++AWY   +P Y+     L++
Sbjct: 44 VTSSPLIAWYLSNLPAYRTAVSPLLR 121


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.326    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,176,363
Number of Sequences: 63676
Number of extensions: 18026
Number of successful extensions: 103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of query: 55
length of database: 12,639,632
effective HSP length: 31
effective length of query: 24
effective length of database: 10,665,676
effective search space: 255976224
effective search space used: 255976224
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)