BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149212.6 - phase: 0 /pseudo
(1684 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 279 8e-75
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 279 8e-75
AI966222 115 4e-31
BI425121 112 2e-24
BI701169 93 2e-19
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 91 4e-18
BI427153 87 8e-17
CO981879 86 1e-16
CO983154 86 1e-16
CO981347 75 2e-16
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 85 2e-16
BI702130 weakly similar to GP|4234854|gb| pol polyprotein {Zea m... 60 1e-13
BI784757 76 1e-13
AI959950 75 2e-13
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 74 7e-13
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 60 8e-09
CO982898 43 7e-07
BI469652 weakly similar to GP|18149115|dbj| reverse transcriptas... 52 2e-06
TC232995 52 2e-06
BG359773 52 2e-06
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 279 bits (713), Expect = 8e-75
Identities = 146/320 (45%), Positives = 193/320 (59%), Gaps = 1/320 (0%)
Frame = +1
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 2185 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 2364
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 2365 NFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAA 2544
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 2545 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 2724
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P + +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 2725 IWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 2904
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSE-VESSPEAEITPE 1057
ES++V DD P K ++ + + D ++D+ K +E E+S A P
Sbjct: 2905 MESINVVVDDLTPARKK---------DVEEDVRTSGDNVADTAKSAENAENSDSATDEPN 3057
Query: 1058 AESNSEAEPSPEIQNENASE 1077
+ + PS IQ + E
Sbjct: 3058 I-NQPDKRPSIRIQKMHPKE 3114
Score = 82.8 bits (203), Expect = 1e-15
Identities = 70/242 (28%), Positives = 121/242 (49%)
Frame = +3
Query: 1399 CGRIEVLSWNSNQPK*RRSICSSNKIYKGASEEV*ARRL*SDEHSNASNLHLKQRRYWNN 1458
C R ++ S ++ R I + ++ K +EV + +++ +L +R W+
Sbjct: 3873 CWRADLFSGTPSEADGRLHIPLTKQVCKEHCQEVWDGKCQP*KNTCTYSLEAVKR*SWHQ 4052
Query: 1459 SRPEAIQRYDWFSVIPHCI*T*YFIQCMLVCKISIRS*RISLNCS*ENLQVSERNN*SWT 1518
+++Q++DW I + T*+ + +CKIS +S* SL S EN ++ + + * W
Sbjct: 4053 C*SKSVQKHDWELTIFNS*QT*HHLCSRCLCKISSQS*DKSLESSKENSEICKWHQ*LWD 4232
Query: 1519 PV*EIPRL*VDWIL*C*LCW*QD*KKINQWKLSIPGRESDILGKQKTSNYCYVYSRSRIH 1578
V + R W+L*C*L W *+K + W + + G +S + +Q+ +Y SR++
Sbjct: 4233 YVLSLFRFNAGWVL*C*LGWKCR*QKKHFWWMFLFGNQSYFMVQQEAELCVPIYC*SRVY 4412
Query: 1579 FSCKLLYTTTLDETSVGRLSD*C*QYSHFL**YCCYLSVKESNSTFKSQAY*DQTPFYQR 1638
S K L+TT+LDE + + L* + CY +S ST ++QA+* T Y R
Sbjct: 4413 CSRKQLFTTSLDEADAEGVQCRTRCHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLY*R 4592
Query: 1639 LC 1640
C
Sbjct: 4593 SC 4598
Score = 69.3 bits (168), Expect = 1e-11
Identities = 73/224 (32%), Positives = 101/224 (44%)
Frame = +2
Query: 1186 MMVGY*LCKKN*ISFRGMMCGIWYPNLFRRTLLEQNGYSETS*MNKER*PETKPDLLLKV 1245
M G LCKKN + +GM G + + L +G S T M K *PET+PDLLLK
Sbjct: 3233 MSSGSMLCKKNWSNSKGMKFGS*FLDPRELM*LAPSGSSRTKPMKKVL*PETRPDLLLKA 3412
Query: 1246 TVNKKALITLKHLLQLQDWKQSGYFYPMQLIMA*YCIKWMSKVVLLMVSLKKKFMSNNLL 1305
T+ K +K L D S + C +WM + M + KK M ++
Sbjct: 3413 TLRLKV*TLMKLSPLLLDLSPSDCYLV*LASSNSSCTRWM*RARF*MDT*MKKPMWSSQR 3592
Query: 1306 GLRILSILTMFINLRNHYMA*NKLPELGMID*VIS*LKMILKEDKLTQHSSEGLLRKTF* 1365
L I I M+ R M *+KL ELGM * S L + ++LT+ S + KT *
Sbjct: 3593 DL*IQLIQIMYTGSRRLSMD*SKLQELGMKG*QSSLLSKGIGREELTRLSLSNKMLKT** 3772
Query: 1366 LCKYMLMI*YLVLLMHLFAKNFLS*CRMNLK*VCGRIEVLSWNS 1409
+YMLM L + C +NL+*V ++ W+S
Sbjct: 3773 *HRYMLMTLCLEGCRMRCFDILSNRCNLNLR*VLLES*LIFWDS 3904
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 279 bits (713), Expect = 8e-75
Identities = 138/291 (47%), Positives = 185/291 (63%)
Frame = +1
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 2182 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 2361
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 2362 NFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAA 2541
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 2542 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 2721
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P++ +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 2722 IWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 2901
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESS 1049
ES++V DD P K + + + DA++S + +++ + ES+
Sbjct: 2902 MESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESN 3054
Score = 83.6 bits (205), Expect = 7e-16
Identities = 75/224 (33%), Positives = 105/224 (46%)
Frame = +2
Query: 1185 QMMVGY*LCKKN*ISFRGMMCGIWYPNLFRRTLLEQNGYSETS*MNKER*PETKPDLLLK 1244
QM G LCKKN + +GM G + L L +G S T M K *PET+PD LLK
Sbjct: 3227 QMSSGSMLCKKNWSNSKGMKSGS*FLGLRELM*LAPSGSSRTKPMKKVS*PETRPDWLLK 3406
Query: 1245 VTVNKKALITLKHLLQLQDWKQSGYFYPMQLIMA*YCIKWMSKVVLLMVSLKKKFMSNNL 1304
T+ K ++ L QL D S Y+ + C +WM + M + KK M ++
Sbjct: 3407 ATLRLKV*TLMRLLPQLLDLSPSDYYLV*LVSSNSSCTRWM*RAHF*MDT*MKKSMWSSQ 3586
Query: 1305 LGLRILSILTMFINLRNHYMA*NKLPELGMID*VIS*LKMILKEDKLTQHSSEGLLRKTF 1364
L+ I M+ R M *+KL ELGM * S L + ++LT+ S + KT
Sbjct: 3587 RDLQTRLIQIMYTGSRRLSMD*SKLQELGMKG*QSSLLSKGIGREELTRPSLSNKMLKT* 3766
Query: 1365 *LCKYMLMI*YLVLLMHLFAKNFLS*CRMNLK*VCGRIEVLSWN 1408
*L +YMLM L + C +NL+*V ++ W+
Sbjct: 3767 *LHRYMLMTLCLEGCRMRCFDILFNRCNLNLR*VLLES*LIFWD 3898
Score = 69.7 bits (169), Expect = 1e-11
Identities = 56/179 (31%), Positives = 95/179 (52%)
Frame = +3
Query: 1462 EAIQRYDWFSVIPHCI*T*YFIQCMLVCKISIRS*RISLNCS*ENLQVSERNN*SWTPV* 1521
+++Q++D I + T + + +CKIS +S SL+ S EN ++ + + * W V
Sbjct: 4059 KSVQKHDRELTIFNS*QTRHHLCSRCLCKISSQSQDKSLDSSKENSEICKWH**LWDYVL 4238
Query: 1522 EIPRL*VDWIL*C*LCW*QD*KKINQWKLSIPGRESDILGKQKTSNYCYVYSRSRIHFSC 1581
+ + W+L*C*L W *+K + W + + G++ + +Q+ +YSRSR++ S
Sbjct: 4239 SLFKSNAGWVL*C*LGWKCR*QKKHFWWMLLFGKQPYFMVQQEAELCVPIYSRSRVYCSR 4418
Query: 1582 KLLYTTTLDETSVGRLSD*C*QYSHFL**YCCYLSVKESNSTFKSQAY*DQTPFYQRLC 1640
K L+T +LDE + + L* + CY +S ST ++QA+* T YQR C
Sbjct: 4419 KQLFTASLDEADAEGVQCRTRCHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLYQRSC 4595
>AI966222
Length = 430
Score = 115 bits (288), Expect(2) = 4e-31
Identities = 51/88 (57%), Positives = 69/88 (77%)
Frame = +1
Query: 896 EMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYELFKGTRPNISYFHQFGC 955
EMART +++N KHF AE +N CY+QN+IYIRP+L++T YEL+KG +PNISYF+ F C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 956 TCYILNTKDYLKKFDAKAQRGIFLGYSE 983
C+I+NTKD L K D+K+ GIF+ YS+
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYSK 264
Score = 39.7 bits (91), Expect(2) = 4e-31
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 985 SKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNA 1023
SKA+RVYNS T +EE++H++F +P + E ES A
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFA 385
>BI425121
Length = 412
Score = 112 bits (279), Expect = 2e-24
Identities = 68/162 (41%), Positives = 89/162 (53%), Gaps = 10/162 (6%)
Frame = +3
Query: 798 SLYGSKYGLVIVDDYSRWTWVKFIKSKDYAC----------EVFSSFCTQIQSEKELKIL 847
SL KY + VDDYSR+TWV F+ K + +VF ++ E L+IL
Sbjct: 6 SLGCKKYEFLTVDDYSRYTWVYFLAHKHESLRYFIRGFKMKKVFVFLLLEVTMELSLRIL 185
Query: 848 KVRSDHGGEFENETFESFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNL 907
+ FCE++GI H S PRTPQ+N VVERKNRTLQE ART++
Sbjct: 186 -------------S*NHFCERNGIFHNLS*PRTPQENRVVERKNRTLQEKARTILF---- 314
Query: 908 AKHFWAEAINTSCYIQNRIYIRPMLEKTAYELFKGTRPNISY 949
T+C++QN+I IRPM++KT YEL+KG R ISY
Sbjct: 315 ----------TTCFVQNKILIRPMIKKTPYELWKGRRHIISY 410
>BI701169
Length = 407
Score = 92.8 bits (229), Expect(2) = 2e-19
Identities = 45/96 (46%), Positives = 59/96 (60%)
Frame = +2
Query: 807 VIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFC 866
+ +DD+SR TWV F K K E F F ++ E KI +RSD GGEF + F+ +C
Sbjct: 119 LFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQKYC 298
Query: 867 EKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 902
+ HGI R+PQQNGV ERKNRT+ MAR+M+
Sbjct: 299 DDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSML 406
Score = 22.7 bits (47), Expect(2) = 2e-19
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +3
Query: 768 KSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKY 804
K SF + + + LEL+H D G + T+SL S +
Sbjct: 6 KKSFPKESNLRAKKLLELIHTD-GGPIKTSSLDKSNH 113
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 90.9 bits (224), Expect = 4e-18
Identities = 50/149 (33%), Positives = 78/149 (51%)
Frame = +1
Query: 761 CQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVKF 820
C+ GK + SF + + L+++H+DL V + + Y + +DD+S+ WV F
Sbjct: 340 CEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKKMWVYF 516
Query: 821 IKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPRT 880
+K K AC F F + + K+ + D G E+ + T F EKHGI H+ ++ T
Sbjct: 517 LKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYLSYTI--FFEKHGIQHQLTTKYT 690
Query: 881 PQQNGVVERKNRTLQEMARTMIHENNLAK 909
PQ NGV ERKN+T+ +M R M+ K
Sbjct: 691 PQHNGVTERKNKTIMDMVRCMLKAKQSVK 777
>BI427153
Length = 422
Score = 86.7 bits (213), Expect = 8e-17
Identities = 43/123 (34%), Positives = 69/123 (55%), Gaps = 4/123 (3%)
Frame = +1
Query: 873 HEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPML 932
H+ + P TPQQNG+ ERKN L E AR+++ +N+ H W +A+ T+C++ NR+ +
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 933 EKTAYELFKGTRPNISYFH----QFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAY 988
+ + + PN F+ FGCTC++ + L K A++ + +FLGYS K Y
Sbjct: 181 NQIPHSI---VFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGY 351
Query: 989 RVY 991
Y
Sbjct: 352 TCY 360
>CO981879
Length = 576
Score = 86.3 bits (212), Expect = 1e-16
Identities = 41/96 (42%), Positives = 62/96 (63%)
Frame = -1
Query: 830 VFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPRTPQQNGVVER 889
+F +F IQ++ ++KI RSD+G E+ N+ ++GI+H+ S TPQQNGV ER
Sbjct: 570 IFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAER 391
Query: 890 KNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNR 925
KNR L E+AR ++ +N K+ W EAI T Y++N+
Sbjct: 390 KNRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283
>CO983154
Length = 568
Score = 85.9 bits (211), Expect = 1e-16
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Frame = +3
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
TPQQNG+ ERKNR L E AR+++ N+ H W +A+ TSC++ NR+ + + + L
Sbjct: 6 TPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHSL 185
Query: 940 FKGTRPNISYFH----QFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSET 995
P+ FH FGCTC++ + L K A++ + +FLGYS K Y+ Y+
Sbjct: 186 ---VFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTM 356
Query: 996 HCVEESMHVKFDDREP 1011
S V F + P
Sbjct: 357 RRYYMSADVTFFEDTP 404
>CO981347
Length = 624
Score = 75.1 bits (183), Expect(2) = 2e-16
Identities = 43/107 (40%), Positives = 56/107 (52%)
Frame = +2
Query: 836 TQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPRTPQQNGVVERKNRTLQ 895
T I ++ K+ +R+D+G EF E F FC K GI P TP QNG+ ER N T+
Sbjct: 131 TLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAERMNMTIL 310
Query: 896 EMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYELFKG 942
E R M+ L K FW EA NT+ Y+ NR + KT E + G
Sbjct: 311 ERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPMEAWSG 451
Score = 30.8 bits (68), Expect(2) = 2e-16
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 801 GSKYGLVIVDDYSRWTWVKFIKSK 824
GS Y L I+DD+SR W+ +K+K
Sbjct: 27 GSSYFLTIIDDFSRRVWLYVLKNK 98
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 85.1 bits (209), Expect = 2e-16
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +2
Query: 757 FSGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWT 816
F +CQ GK V+SS + + S P ++H D++G N S +Y + +D++S+ T
Sbjct: 392 FCESCQLGKHVRSSXRHVESRVDS-PFLVIHXDIWGP-NRVSSMSYRYFVTFIDEFSQCT 565
Query: 817 WVKFIKSKDYACEVFSSFCT-QIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEF 875
V +K + +S + Q K +KIL RSD+ E+ + F GILH+F
Sbjct: 566 RVFLMKERSEILSFLTSVNKIKTQFGKTIKIL--RSDNAKEYFSSVISPFXSAQGILHQF 739
Query: 876 SSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKH 910
S P TPQQN + ERKNR L E ART++ N H
Sbjct: 740 SCPHTPQQNDIAERKNRHLVETARTLLLHANEPIH 844
>BI702130 weakly similar to GP|4234854|gb| pol polyprotein {Zea mays},
partial (14%)
Length = 421
Score = 60.1 bits (144), Expect(2) = 1e-13
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = -1
Query: 886 VVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYELFKGTRP 945
V ER+NRTL +M R+M L + W +A+ T+ YI NR+ + + KT +ELFKG +P
Sbjct: 250 VAERRNRTLLDMVRSMRSNVKLPQFLWIDALKTAAYILNRVPTK-AVSKTPFELFKGWKP 74
Query: 946 NISYFHQFGC 955
++ + +GC
Sbjct: 73 SLRHIRVWGC 44
Score = 36.2 bits (82), Expect(2) = 1e-13
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 9/56 (16%)
Frame = -2
Query: 839 QSEKELKILKVRSDHGGEFENE---------TFESFCEKHGILHEFSSPRTPQQNG 885
Q K++KI VRSD GGE+ +F F ++H I+ +++ P +P QNG
Sbjct: 411 QCGKQIKI--VRSDRGGEYYGRYTEDGQAPGSFAKFLQEHEIVAQYTMPGSPDQNG 250
>BI784757
Length = 430
Score = 75.9 bits (185), Expect = 1e-13
Identities = 37/118 (31%), Positives = 65/118 (54%)
Frame = +1
Query: 761 CQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVKF 820
C + K +S+FK + LE+++ D+ G + T SL G++Y + +D+ +R WV
Sbjct: 76 CLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDELTRKVWVYL 255
Query: 821 IKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
I+ K EVF F + + I +R++ GGE+ + F+ FC++ GI+HE + P
Sbjct: 256 IRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTEFQEFCDQQGIIHEVTPP 429
>AI959950
Length = 466
Score = 75.1 bits (183), Expect = 2e-13
Identities = 54/126 (42%), Positives = 68/126 (53%)
Frame = -2
Query: 1193 CKKN*ISFRGMMCGIWYPNLFRRTLLEQNGYSETS*MNKER*PETKPDLLLKVTVNKKAL 1252
CKKN ISF+ +M R LE NGY T+* R +TK D LLKVT N+K
Sbjct: 387 CKKNLISFKRIMSRSSLNYQKERR*LE*NGYFVTN*TRMVRL*DTKQD*LLKVTHNRKV* 208
Query: 1253 ITLKHLLQLQDWKQSGYFYPMQLIMA*YCIKWMSKVVLLMVSLKKKFMSNNLLGLRILSI 1312
T K L L K ++ +Q I+ * CIKWM KV M K+KFM NN L L++
Sbjct: 207 TTQKPLHLLHV*K*YASYFHLQPIVI*SCIKWM*KVHF*MA*SKRKFMLNNRLDLKMKPF 28
Query: 1313 LTMFIN 1318
+ MF+N
Sbjct: 27 INMFLN 10
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 73.6 bits (179), Expect = 7e-13
Identities = 59/145 (40%), Positives = 76/145 (51%), Gaps = 3/145 (2%)
Frame = -1
Query: 1193 CKKN*ISFRGMMCGIWYPNLFRRTLLEQNGYSETS*MNKER*PETKPDLLLKVTVNKKAL 1252
CKKN*I+ + +MCG NL EQNG+ E +*MN E + D K + K+
Sbjct: 454 CKKN*INLKEIMCGN**KNLKIILS*EQNGFLEIN*MNMA*LLEIRLD**QKGIIKKRE* 275
Query: 1253 ITLKHLLQLQDWKQSGYF---YPMQLIMA*YCIKWMSKVVLLMVSLKKKFMSNNLLGLRI 1309
KH+LQLQD K F YP ++ + IKWM KV+ MV KKK+M NN L+
Sbjct: 274 TMKKHMLQLQD*KSLECF*HMYP**ILNS---IKWMLKVLF*MV*FKKKYMLNNPQALKS 104
Query: 1310 LSILTMFINLRNHYMA*NKLPELGM 1334
MFIN + +M *NK GM
Sbjct: 103 RINQLMFINCKRLFMV*NKPLGRGM 29
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment) ,
partial (21%)
Length = 912
Score = 60.1 bits (144), Expect = 8e-09
Identities = 34/98 (34%), Positives = 52/98 (52%), Gaps = 1/98 (1%)
Frame = -2
Query: 910 HFWAEAINTSCYIQNRIYIRPMLEKTA-YELFKGTRPNISYFHQFGCTCYILNTKDYLKK 968
+FW A+ + Y+ N I P L+ T+ YE G P+IS+ FGC CY K KK
Sbjct: 902 NFWNYALLHAAYLINCIPT-PFLQNTSPYERLHGHIPDISHLRIFGCLCYASTIKANRKK 726
Query: 969 FDAKAQRGIFLGYSERSKAYRVYNSETHCVEESMHVKF 1006
+ +A IF+G+ +K Y +Y+ +H + S +V F
Sbjct: 725 LEPRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNVVF 612
>CO982898
Length = 816
Score = 43.1 bits (100), Expect(2) = 7e-07
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = -3
Query: 852 DHGGEFENETFESFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHF 911
D GGEF T F GI+H+ P T QN VVERK R + + +++ +L F
Sbjct: 814 DWGGEF*PLT--EFLND*GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKF 644
Query: 912 WAEAINTSCYIQNRI 926
W A T ++ NR+
Sbjct: 643 WGHAFITPVFLINRL 599
Score = 30.0 bits (66), Expect(2) = 7e-07
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = -1
Query: 948 SYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYR 989
S+ FGC C+ L ++KF+ K+ IFLG K Y+
Sbjct: 534 SFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHKNYK 409
>BI469652 weakly similar to GP|18149115|dbj| reverse transcriptase {Silene
noctiflora}, partial (60%)
Length = 427
Score = 52.4 bits (124), Expect = 2e-06
Identities = 31/67 (46%), Positives = 41/67 (60%)
Frame = +1
Query: 1271 YPMQLIMA*YCIKWMSKVVLLMVSLKKKFMSNNLLGLRILSILTMFINLRNHYMA*NKLP 1330
+P+QLI * KW+ KVV M LK+K MS+NL L + T+F N + +M *N+
Sbjct: 220 FPLQLIKT*IFFKWILKVVF*MTLLKRKCMSDNLQTL*TIHF*TIFSNFKRLHMV*NRHL 399
Query: 1331 ELGMID* 1337
LGMID*
Sbjct: 400 MLGMID* 420
>TC232995
Length = 1009
Score = 52.4 bits (124), Expect = 2e-06
Identities = 43/95 (45%), Positives = 51/95 (53%)
Frame = +3
Query: 1302 NNLLGLRILSILTMFINLRNHYMA*NKLPELGMID*VIS*LKMILKEDKLTQHSSEGLLR 1361
NN L L+ L TMFIN + +M *NK GM D*VI LK E K H S
Sbjct: 6 NNPLVLKFLINQTMFINYKRLFMV*NKPLGHGMND*VIFFLKKNSPEVKWIPHYS*RESI 185
Query: 1362 KTF*LCKYMLMI*YLVLLMHLFAKNFLS*CRMNLK 1396
F KYMLMI*+L LM A++F C++NLK
Sbjct: 186 MIFCWFKYMLMI*FLDPLMIHCARSFPLICKVNLK 290
>BG359773
Length = 382
Score = 52.0 bits (123), Expect = 2e-06
Identities = 34/112 (30%), Positives = 55/112 (48%), Gaps = 9/112 (8%)
Frame = -1
Query: 852 DHGGEFE---NET------FESFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 902
D GGE+ +ET F +K GI +++ PQ NGV E++NR L +M +M+
Sbjct: 379 DRGGEYYGRYDETEQYXGPFAKLIQKRGICAQYTMLGIPQ*NGVSEKRNRILMDMVTSML 200
Query: 903 HENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYELFKGTRPNISYFHQFG 954
L W A+ Y+ NR+ + + KT +EL+ P+I + +G
Sbjct: 199 INLTLPISLWMYALKIVMYLLNRVPSK-AVPKTHFELWTNRTPSIRHLDVWG 47
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.359 0.159 0.563
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,602,386
Number of Sequences: 63676
Number of extensions: 954213
Number of successful extensions: 10483
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 5796
Number of HSP's successfully gapped in prelim test: 428
Number of HSP's that attempted gapping in prelim test: 4445
Number of HSP's gapped (non-prelim): 6649
length of query: 1684
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1574
effective length of database: 5,635,272
effective search space: 8869918128
effective search space used: 8869918128
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC149212.6