BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149211.3 + phase: 0
(367 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM309722 39 0.003
TC218169 similar to UP|Q84TF1 (Q84TF1) At4g28830, partial (94%) 39 0.004
TC234934 38 0.006
TC232303 36 0.031
TC220865 weakly similar to UP|Q6K271 (Q6K271) Flowering time con... 30 2.2
TC220864 weakly similar to UP|Q6K271 (Q6K271) Flowering time con... 30 2.2
TC203610 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid O-met... 29 3.8
TC203345 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid O-met... 28 5.0
TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 28 6.5
TC209071 28 8.5
>BM309722
Length = 428
Score = 39.3 bits (90), Expect = 0.003
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 316 VDDQIDFIAGDFFVLAPKLK 335
VDDQIDFI GDFF+L PKLK
Sbjct: 223 VDDQIDFIMGDFFLLTPKLK 282
>TC218169 similar to UP|Q84TF1 (Q84TF1) At4g28830, partial (94%)
Length = 891
Score = 38.9 bits (89), Expect = 0.004
Identities = 23/55 (41%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Frame = +2
Query: 293 HVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFVLAPKLK-ADTVFLSPPWG 346
HV+ IDIDP ++ A +NA VD IDFI + L + + DTV ++PP+G
Sbjct: 251 HVLGIDIDPESLEIASNNAEELEVD--IDFIQSNVMDLGWRGRIVDTVIMNPPFG 409
>TC234934
Length = 597
Score = 38.1 bits (87), Expect = 0.006
Identities = 15/19 (78%), Positives = 16/19 (83%)
Frame = +2
Query: 349 DYSKVVTYDMKTMLRPHDG 367
DY K TYD+KTMLRPHDG
Sbjct: 8 DYVKAATYDLKTMLRPHDG 64
>TC232303
Length = 890
Score = 35.8 bits (81), Expect = 0.031
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3
Query: 316 VDDQIDFIAGDFFVLAPKLK 335
VDDQIDFI GDFF+L KLK
Sbjct: 675 VDDQIDFIMGDFFLLTHKLK 734
>TC220865 weakly similar to UP|Q6K271 (Q6K271) Flowering time control protein
isoform rFCA-1, partial (6%)
Length = 709
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Frame = +1
Query: 27 WDTFY---GRRYFYNVKTDTSTWDPPPGMEHLAFGGCTELDDSETLKSSEECETQSSIKQ 83
W Y G +Y+YN T S WD P E A L + E+ K E+ + S+ Q
Sbjct: 295 WSEHYCPDGDKYYYNCVTCESRWDKP---EEYA------LYEKESQKQQEQEDNSCSLSQ 447
Query: 84 ---PEETLVDENLSGNQHEEYSAEIGVAAG 110
LV + H+ +E G
Sbjct: 448 LSLSSSQLVGQKQQETDHDHKQSETSPVVG 537
>TC220864 weakly similar to UP|Q6K271 (Q6K271) Flowering time control protein
isoform rFCA-1, partial (6%)
Length = 774
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Frame = +1
Query: 27 WDTFY---GRRYFYNVKTDTSTWDPPPGMEHLAFGGCTELDDSETLKSSEECETQSSIKQ 83
W Y G +Y+YN T S WD P E A L + E+ K E+ + S+ Q
Sbjct: 475 WSEHYCPDGDKYYYNCVTCESRWDKP---EEYA------LYEKESQKQQEQEDNSCSLSQ 627
Query: 84 ---PEETLVDENLSGNQHEEYSAEIGVAAG 110
LV + H+ +E G
Sbjct: 628 LSLSSSQLVGQKQQETDHDHKQSETSPVVG 717
>TC203610 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid
O-methyltransferase, partial (62%)
Length = 1504
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/70 (28%), Positives = 31/70 (43%)
Frame = +1
Query: 272 TLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFVLA 331
+L+D G GG+ + + H+ AI+ D H A D I + GD FV
Sbjct: 748 SLVDVGGGIGGSLSEIVRAYPHINAINFD------LPHVVATAPKFDGITHVGGDMFVSI 909
Query: 332 PKLKADTVFL 341
P AD +++
Sbjct: 910 P--SADAIYM 933
>TC203345 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid
O-methyltransferase, partial (48%)
Length = 784
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/70 (28%), Positives = 31/70 (43%)
Frame = +1
Query: 272 TLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFVLA 331
+L+D G GG+ + + H+ AI+ D H A D I + GD FV
Sbjct: 58 SLVDVGGGIGGSLSEIVRAYPHINAINFD------LPHVVATAPKYDGITHVGGDMFVSI 219
Query: 332 PKLKADTVFL 341
P AD +++
Sbjct: 220 P--DADAIYM 243
>TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (30%)
Length = 1417
Score = 28.1 bits (61), Expect = 6.5
Identities = 26/140 (18%), Positives = 58/140 (40%), Gaps = 4/140 (2%)
Frame = +3
Query: 72 SEECETQSSIKQPEETLVDENLSGNQHEEYSAEIGVAAGNLVSDIATNSEDQFLHHPSDE 131
S C + P+E + + + + ++++ VAA + N +D+ + +E
Sbjct: 330 SPTCSRGGDLVSPKENMASAKENTKKRKPQNSKV-VAASD-------NKQDKRVKASGEE 485
Query: 132 N----LERTSCNGGVSRCSVSNTLDHVVSSNNKCSQATSEVDHTPTEYMVIDTLELDSKS 187
E+TS G S + +N + + +K + SEV + EY+ + +
Sbjct: 486 GESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATD 665
Query: 188 DPFMSKQEKKVKRKHRRKKL 207
++++ ++ K R K L
Sbjct: 666 SHSLAERVRREKISERMKYL 725
>TC209071
Length = 953
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 145 CSVSNTLDHVVSSNNKCSQATSEV 168
C V + L + SSNN+C + TSEV
Sbjct: 709 CIVGSQLYCLASSNNRCERTTSEV 780
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,154,927
Number of Sequences: 63676
Number of extensions: 235437
Number of successful extensions: 1215
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of query: 367
length of database: 12,639,632
effective HSP length: 99
effective length of query: 268
effective length of database: 6,335,708
effective search space: 1697969744
effective search space used: 1697969744
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC149211.3