BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149211.1 + phase: 0
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG352463 similar to GP|11245494|gb| SPATULA {Arabidopsis thalian... 131 9e-32
TC207452 similar to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (31%) 117 1e-27
AW782148 homologue to GP|11245494|gb| SPATULA {Arabidopsis thali... 117 2e-27
TC210945 similar to GB|BAC56979.1|28372351|AB103113 PIF3 like ba... 100 2e-22
TC228741 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacti... 99 9e-22
TC208663 similar to UP|PIF4_ARATH (Q8W2F3) Phytochrome-interacti... 98 1e-21
TC218350 similar to GB|BAC56979.1|28372351|AB103113 PIF3 like ba... 97 2e-21
TC231105 90 4e-19
TC218434 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacti... 89 9e-19
TC205173 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix ... 82 8e-17
TC205174 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix ... 82 1e-16
TC217804 79 5e-16
TC219879 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix ... 77 3e-15
TC207453 similar to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (13%) 75 8e-15
TC207545 homologue to GB|AAN28890.1|23506061|AY143951 At4g02590/... 74 2e-14
TC223523 homologue to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (12%) 47 3e-14
TC229602 homologue to GB|AAN28890.1|23506061|AY143951 At4g02590/... 73 4e-14
TC214588 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (35%) 69 7e-13
AW307067 66 5e-12
TC215736 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 66 6e-12
>BG352463 similar to GP|11245494|gb| SPATULA {Arabidopsis thaliana}, partial
(19%)
Length = 471
Score = 131 bits (330), Expect = 9e-32
Identities = 68/78 (87%), Positives = 72/78 (92%)
Frame = +3
Query: 28 SSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIE 87
+SK PPPRSSSKRSRAAEFHNLSEKRRRS+INEK+KALQNLIPNSNKTDKASMLDEAIE
Sbjct: 3 ASKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIE 182
Query: 88 YLKQLQLQVQVSFLSLKM 105
YLKQLQLQVQ L L+M
Sbjct: 183 YLKQLQLQVQYL*LILQM 236
>TC207452 similar to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (31%)
Length = 1207
Score = 117 bits (294), Expect = 1e-27
Identities = 66/100 (66%), Positives = 75/100 (75%), Gaps = 3/100 (3%)
Frame = +2
Query: 16 FGLKNDEGSELPSSKA---APPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPN 72
+ +++EG E P+ + A RSSSKRSRAAE HN SEKRRR +INEK+KALQNLIPN
Sbjct: 59 YDCESEEGDEAPAEEVPTKAASARSSSKRSRAAEVHN*SEKRRRGRINEKMKALQNLIPN 238
Query: 73 SNKTDKASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLKH 112
SNKTDKASMLDEAIEYLKQLQLQVQ+ L M N H
Sbjct: 239 SNKTDKASMLDEAIEYLKQLQLQVQM----LSMRNGLSLH 346
>AW782148 homologue to GP|11245494|gb| SPATULA {Arabidopsis thaliana},
partial (17%)
Length = 381
Score = 117 bits (293), Expect = 2e-27
Identities = 62/74 (83%), Positives = 68/74 (91%)
Frame = +1
Query: 25 ELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDE 84
E+P+ A+ RSSSKRSRAAE HNLSEKRRRS+INEK+KALQNLIPNSNKTDKASMLDE
Sbjct: 166 EVPTKAASS--RSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDE 339
Query: 85 AIEYLKQLQLQVQV 98
AIEYLKQLQLQVQ+
Sbjct: 340 AIEYLKQLQLQVQM 381
>TC210945 similar to GB|BAC56979.1|28372351|AB103113 PIF3 like basic Helix
Loop Helix protein {Arabidopsis thaliana;} , partial
(19%)
Length = 432
Score = 100 bits (249), Expect = 2e-22
Identities = 54/98 (55%), Positives = 65/98 (66%)
Frame = +2
Query: 19 KNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDK 78
K D E P +K +S+KRS AAE HNLSE+ RR +INEK+KALQ LIP NK+DK
Sbjct: 26 KKDVDFESPEAKKQVHGSTSTKRSHAAEVHNLSERSRRDRINEKMKALQELIPRCNKSDK 205
Query: 79 ASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLKHVKYY 116
ASMLDEAIEYLK LQLQVQ+ + M ++ Y
Sbjct: 206 ASMLDEAIEYLKSLQLQVQMMSMGYGMVPMMFPGIQQY 319
>TC228741 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008), partial
(25%)
Length = 763
Score = 98.6 bits (244), Expect = 9e-22
Identities = 48/62 (77%), Positives = 55/62 (88%)
Frame = +3
Query: 37 SSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQV 96
+ SKRSRAAE HNLSE++RR +INEK++ALQ LIPN NK DKASMLDEAIEYLK LQLQV
Sbjct: 276 AGSKRSRAAEVHNLSERKRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQV 455
Query: 97 QV 98
Q+
Sbjct: 456 QI 461
>TC208663 similar to UP|PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4
(Basic helix-loop-helix protein 9) (bHLH9) (AtbHLH009)
(Short under red-light 2), partial (19%)
Length = 1102
Score = 98.2 bits (243), Expect = 1e-21
Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 5/103 (4%)
Frame = +1
Query: 19 KNDEGSELPSSKAAPPPRSS-----SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNS 73
+++E SE K+A +SS ++R+RAAE HNLSE+RRR +INEK+KALQ LIP+S
Sbjct: 172 ESEEQSEDTELKSALGNKSSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHS 351
Query: 74 NKTDKASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLKHVKYY 116
+KTDKASML+EAIEYLK LQLQ+Q+ ++ M +++Y
Sbjct: 352 SKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPIMFPGIQHY 480
>TC218350 similar to GB|BAC56979.1|28372351|AB103113 PIF3 like basic Helix
Loop Helix protein {Arabidopsis thaliana;} , partial
(25%)
Length = 1060
Score = 97.4 bits (241), Expect = 2e-21
Identities = 49/69 (71%), Positives = 57/69 (82%)
Frame = +1
Query: 37 SSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQV 96
+S+KRSRAAE HNLSE+RRR +INEK+KALQ LIP NK+DKASMLDEAI YLK LQLQV
Sbjct: 52 TSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQV 231
Query: 97 QVSFLSLKM 105
Q+ + M
Sbjct: 232 QMMSMGCGM 258
>TC231105
Length = 449
Score = 89.7 bits (221), Expect = 4e-19
Identities = 42/61 (68%), Positives = 53/61 (86%)
Frame = +2
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
S+KRSRAA HN SE++RR KIN+++K LQ L+PNS+K+DKASMLDE IEYLKQLQ Q+Q
Sbjct: 155 STKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKSDKASMLDEVIEYLKQLQAQLQ 334
Query: 98 V 98
+
Sbjct: 335 M 337
>TC218434 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008), partial
(11%)
Length = 832
Score = 88.6 bits (218), Expect = 9e-19
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +2
Query: 40 KRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQVS 99
KRSR E HNLSEK+RR KIN+K++ L++LIPN NK DKASMLD+AI+YLK L+LQ+Q +
Sbjct: 125 KRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQAN 304
Query: 100 FLSLKMNN 107
F + M +
Sbjct: 305 FQIMSMGS 328
>TC205173 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix (BHLH)-like,
partial (29%)
Length = 1490
Score = 82.0 bits (201), Expect = 8e-17
Identities = 40/80 (50%), Positives = 59/80 (73%)
Frame = +2
Query: 23 GSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASML 82
G+ + A P R ++R +A + H+++E+ RR +I E++KALQ L+PN+NKTDKASML
Sbjct: 437 GAAAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASML 616
Query: 83 DEAIEYLKQLQLQVQVSFLS 102
DE I+Y+K LQLQV+V +S
Sbjct: 617 DEIIDYVKFLQLQVKVLSMS 676
>TC205174 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix (BHLH)-like,
partial (29%)
Length = 845
Score = 81.6 bits (200), Expect = 1e-16
Identities = 40/80 (50%), Positives = 58/80 (72%)
Frame = +1
Query: 23 GSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASML 82
G + A P R ++R +A + H+++E+ RR +I E++KALQ L+PN+NKTDKASML
Sbjct: 91 GXAAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASML 270
Query: 83 DEAIEYLKQLQLQVQVSFLS 102
DE I+Y+K LQLQV+V +S
Sbjct: 271 DEIIDYVKFLQLQVKVLSMS 330
>TC217804
Length = 1578
Score = 79.3 bits (194), Expect = 5e-16
Identities = 41/72 (56%), Positives = 51/72 (69%), Gaps = 3/72 (4%)
Frame = +1
Query: 30 KAAPPPRSSSKRSRA---AEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAI 86
KA RSS R + H SE+RRR KIN+++K LQ L+PNS+KTDKASMLDE I
Sbjct: 760 KATKVDRSSGSNKRIKANSVVHKQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVI 939
Query: 87 EYLKQLQLQVQV 98
+Y+KQLQ QVQ+
Sbjct: 940 QYMKQLQAQVQM 975
>TC219879 homologue to UP|Q6K8Y4 (Q6K8Y4) Basic helix-loop-helix (BHLH)-like,
partial (27%)
Length = 1114
Score = 77.0 bits (188), Expect = 3e-15
Identities = 37/70 (52%), Positives = 54/70 (76%)
Frame = +3
Query: 33 PPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQL 92
P R ++R +A + H+++E+ RR +I E++KALQ L+ N+NKTDKASMLDE I+Y+K L
Sbjct: 228 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVTNANKTDKASMLDEIIDYVKFL 407
Query: 93 QLQVQVSFLS 102
QLQV+V +S
Sbjct: 408 QLQVKVLSMS 437
>TC207453 similar to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (13%)
Length = 664
Score = 75.5 bits (184), Expect = 8e-15
Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Frame = +2
Query: 16 FGLKNDEGSELPSSKA---APPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPN 72
+ +++EG E P+ + A RSSSKRS+AAE HN S+ R R INEK+KALQNLIP+
Sbjct: 455 YDCESEEGVEAPAEEVPTKAASSRSSSKRSKAAEVHN*SKNRTRGMINEKMKALQNLIPH 634
Query: 73 SNKTDKASML 82
+N TDKASML
Sbjct: 635 TNNTDKASML 664
>TC207545 homologue to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;} , partial (53%)
Length = 1392
Score = 73.9 bits (180), Expect = 2e-14
Identities = 35/87 (40%), Positives = 61/87 (69%), Gaps = 6/87 (6%)
Frame = +1
Query: 22 EGSELPSSKAAPP------PRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK 75
+G +P++ P PR ++R +A + H+++E+ RR +I E+++ALQ L+P+ NK
Sbjct: 211 DGQPMPTTVPTAPHPPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK 390
Query: 76 TDKASMLDEAIEYLKQLQLQVQVSFLS 102
TD+A+MLDE ++Y+K L+LQV+V +S
Sbjct: 391 TDRAAMLDEIVDYVKFLRLQVKVLSMS 471
>TC223523 homologue to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (12%)
Length = 405
Score = 47.0 bits (110), Expect(2) = 3e-14
Identities = 23/24 (95%), Positives = 24/24 (99%)
Frame = +1
Query: 75 KTDKASMLDEAIEYLKQLQLQVQV 98
+TDKASMLDEAIEYLKQLQLQVQV
Sbjct: 187 QTDKASMLDEAIEYLKQLQLQVQV 258
Score = 46.6 bits (109), Expect(2) = 3e-14
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 52 EKRRRSKINEKLKALQNLIPNSNKTDK 78
E+RRR +INEK+KALQNLIPNSNK K
Sbjct: 9 EQRRRGRINEKMKALQNLIPNSNKVHK 89
>TC229602 homologue to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;} , partial (54%)
Length = 1052
Score = 73.2 bits (178), Expect = 4e-14
Identities = 36/86 (41%), Positives = 60/86 (68%), Gaps = 6/86 (6%)
Frame = +1
Query: 23 GSELPSSKAAPP------PRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKT 76
G +P++ A P PR + R +A + H+++E+ RR +I E+++ALQ L+P+ NKT
Sbjct: 88 GQPMPTTMPAAPHPPAIRPRVRAIRGQATDPHSIAERLRRERIAERIRALQELVPSVNKT 267
Query: 77 DKASMLDEAIEYLKQLQLQVQVSFLS 102
D+A+MLDE ++Y+K L+LQV+V +S
Sbjct: 268 DRAAMLDEIVDYVKFLRLQVKVLSMS 345
>TC214588 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (35%)
Length = 837
Score = 68.9 bits (167), Expect = 7e-13
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Frame = +3
Query: 15 VFGLKNDEGSELPSSKAAPPPRS----SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLI 70
V G K + + PSS P + ++R +A + H+L+E+ RR KI+E++K LQ+L+
Sbjct: 309 VAGNKLPQQTPKPSSSEQAPKQDYIHVRARRGQATDNHSLAERARREKISERMKILQDLV 488
Query: 71 PNSNKT-DKASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLKHVKYYECF 119
P NK DKA +LDE I Y++ LQ QV+ + L+ + L ECF
Sbjct: 489 PGCNKVIDKAYVLDEIINYVQSLQRQVEFLSMKLEAVSSRLSMKPTLECF 638
>AW307067
Length = 430
Score = 66.2 bits (160), Expect = 5e-12
Identities = 36/81 (44%), Positives = 52/81 (63%), Gaps = 5/81 (6%)
Frame = +1
Query: 20 NDEGSELPSSKAAPPPRS----SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK 75
NDE +SK PP+ ++R +A + H+L+E+ RR KI+E++K LQ+L+P NK
Sbjct: 187 NDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNK 366
Query: 76 -TDKASMLDEAIEYLKQLQLQ 95
T KA MLDE I Y++ LQ Q
Sbjct: 367 VTGKALMLDEIINYVQSLQRQ 429
>TC215736 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (28%)
Length = 1047
Score = 65.9 bits (159), Expect = 6e-12
Identities = 38/89 (42%), Positives = 58/89 (64%), Gaps = 4/89 (4%)
Frame = +1
Query: 21 DEGSELPSSKAAPPP---RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-T 76
D + +SKA+ P ++R +A + H+L+E+ RR KI+E++ LQ+L+P NK T
Sbjct: 256 DTSNSKQNSKASEKPDYIHVRARRGQATDSHSLAERVRREKISERMNYLQDLVPGCNKVT 435
Query: 77 DKASMLDEAIEYLKQLQLQVQVSFLSLKM 105
KA MLDE I Y++ LQ QV+ FLS+K+
Sbjct: 436 GKAGMLDEIINYVQSLQRQVE--FLSMKL 516
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,637,689
Number of Sequences: 63676
Number of extensions: 88075
Number of successful extensions: 1270
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC149211.1