BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149210.5 + phase: 0
(128 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230878 homologue to GB|AAO42852.1|28416643|BT004606 At5g59380 ... 83 3e-17
TC230270 similar to UP|Q7PTY1 (Q7PTY1) ENSANGP00000013460 (Fragm... 75 6e-15
TC232624 weakly similar to UP|Q9SLR5 (Q9SLR5) AHM2 (Fragment), p... 44 2e-05
TC234874 40 2e-04
BU551338 29 0.68
TC226338 similar to UP|Q41123 (Q41123) PVPR3 protein, partial (92%) 29 0.68
TC223076 weakly similar to UP|Q9SDA8 (Q9SDA8) At2g17020 (At2g170... 28 0.89
TC210100 28 1.5
TC205338 homologue to UP|C982_SOYBN (O48922) Cytochrome P450 98A... 28 1.5
BI426534 27 2.0
TC231160 similar to UP|Q9FLJ5 (Q9FLJ5) Exonuclease-like protein,... 27 2.6
TC232712 27 2.6
TC232830 27 3.4
TC218289 26 4.4
TC222176 26 5.7
TC215775 similar to UP|O22449 (O22449) Multidrug resistance-asso... 26 5.7
AI440842 similar to GP|13022177|gb| protein kinase {Lophopyrum e... 26 5.7
TC224677 26 5.7
TC228907 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {A... 25 7.5
TC218288 25 7.5
>TC230878 homologue to GB|AAO42852.1|28416643|BT004606 At5g59380 {Arabidopsis
thaliana;} , partial (7%)
Length = 1111
Score = 83.2 bits (204), Expect = 3e-17
Identities = 44/90 (48%), Positives = 61/90 (66%)
Frame = +2
Query: 10 EHLNLNRNVMNLREKELQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKF 69
EHL + + + ELQIV S +PDGW+VE++PRPS+ + D+YY EP TG+KF
Sbjct: 74 EHLQNQKPTIPM---ELQIV-SSQQHFRLPDGWVVEKKPRPSHESRFDKYYYEPGTGRKF 241
Query: 70 RSLVSVQRYLNGGETGDYLPTQRIISENNN 99
RSL+SVQR+L GET DY+ ++S+N N
Sbjct: 242 RSLLSVQRHL-AGETRDYVVANTMMSKNEN 328
>TC230270 similar to UP|Q7PTY1 (Q7PTY1) ENSANGP00000013460 (Fragment),
partial (5%)
Length = 1250
Score = 75.5 bits (184), Expect = 6e-15
Identities = 37/78 (47%), Positives = 54/78 (68%)
Frame = +3
Query: 26 LQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGETG 85
++ + + S +PDGW+VE+RPR SNP+H+DRYY EP T ++FRSL+SV+R+L GET
Sbjct: 381 MEFQILTSSHFRLPDGWVVEERPRASNPSHVDRYYYEPGTRRQFRSLLSVKRHLT-GETR 557
Query: 86 DYLPTQRIISENNNNVSS 103
D +IS+ N + S
Sbjct: 558 DC-----VISKRKNFIES 596
>TC232624 weakly similar to UP|Q9SLR5 (Q9SLR5) AHM2 (Fragment), partial (14%)
Length = 862
Score = 43.9 bits (102), Expect = 2e-05
Identities = 25/87 (28%), Positives = 47/87 (53%), Gaps = 3/87 (3%)
Frame = +2
Query: 16 RNVMNLREKELQIVVQSPSKVEVPDGWLVEQRPRPSNPN-HIDRYYIEPHTGQKFRSLVS 74
+N N+ + +VV+ + ++P GW+ E + R ++ D +YI+P +G FRS
Sbjct: 305 KNCSNM-DSPTDVVVEKSTVEDLPPGWVKELKIRKNSKGIRKDPFYIDPASGYVFRSKKD 481
Query: 75 VQRYLNGGETGD--YLPTQRIISENNN 99
V RYL G+ + P++R + + +N
Sbjct: 482 VLRYLESGDIRSCAFKPSRRQVQDEDN 562
>TC234874
Length = 807
Score = 40.4 bits (93), Expect = 2e-04
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 38 VPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGE 83
+P GW VE R R + D+YY P +G KF S V V RYL+ +
Sbjct: 89 LPPGWTVEVRVRKNGKR--DKYYFPPSSGLKFNSKVEVFRYLDNAQ 220
>BU551338
Length = 545
Score = 28.9 bits (63), Expect = 0.68
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +2
Query: 94 ISENNNNVSSNFTFTSFCCIIRLYSCFCF 122
I++ NN+ N SFCC L C+ F
Sbjct: 56 INDTRNNIRENIYRYSFCCFTALTFCYIF 142
>TC226338 similar to UP|Q41123 (Q41123) PVPR3 protein, partial (92%)
Length = 860
Score = 28.9 bits (63), Expect = 0.68
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +2
Query: 85 GDYLPTQRIISENNNNVSSNFTFTSFCCIIRLYSCFCFNL 124
G ++ T+ I + + + F+F+ F CII + C FNL
Sbjct: 689 GAWVETRGICNRKDEFLGDPFSFSYF*CIISKFLCLFFNL 808
>TC223076 weakly similar to UP|Q9SDA8 (Q9SDA8) At2g17020
(At2g17020/At2g17020), partial (21%)
Length = 867
Score = 28.5 bits (62), Expect = 0.89
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +1
Query: 95 SENNNNVSSNFTFTSFCCIIRLYSCFCFNLYD 126
+ENN+ + F F C I LY C +LYD
Sbjct: 631 AENNDEMVM*FAFKLSCVFI*LYVYLCLSLYD 726
>TC210100
Length = 711
Score = 27.7 bits (60), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = -3
Query: 53 PNHIDRYYIEPHTGQKFRSLVSVQRYLNGGETGDYLPT 90
P I+R ++ G + L+S QR L ETG+ LPT
Sbjct: 511 PTSINRRFLRRRWGSRLGRLLSKQR*LAVKETGE*LPT 398
>TC205338 homologue to UP|C982_SOYBN (O48922) Cytochrome P450 98A2 , partial
(37%)
Length = 777
Score = 27.7 bits (60), Expect = 1.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 99 NNVSSNFTFTSFCCIIRLYSCFCFNLYDGN 128
+N+S +F + + CCI ++ C C + +GN
Sbjct: 568 SNLSFSFPWITLCCIKKIALCLCNYI*NGN 657
>BI426534
Length = 420
Score = 27.3 bits (59), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 101 VSSNFTFTSFCCIIRLYSCFC 121
+SSNF F SFC +I+ Y FC
Sbjct: 326 ISSNFIF-SFCLLIQFYHDFC 385
>TC231160 similar to UP|Q9FLJ5 (Q9FLJ5) Exonuclease-like protein, partial
(35%)
Length = 538
Score = 26.9 bits (58), Expect = 2.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -2
Query: 42 WLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLV----SVQRYLNGGETG 85
WL+ R SNPN ++ Y + P +V +V GG++G
Sbjct: 360 WLINLSKRISNPNTVESYDVMPRPNPPVEEVVNEVSNVGEGRGGGDSG 217
>TC232712
Length = 697
Score = 26.9 bits (58), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 91 QRIISENNNNVSSNFTFTSFCCIIRLYSCFCFNL 124
+++IS ++S+N F CII +Y CF NL
Sbjct: 180 RKVISHF*YSISANMLFQMS*CIIIIYKCF*DNL 79
>TC232830
Length = 477
Score = 26.6 bits (57), Expect = 3.4
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = +2
Query: 87 YLPTQRIISENNNNVSSNFTFTSFCCIIRLYSCFCFN 123
+LP Q + + + +F F+ C ++ L C CFN
Sbjct: 317 FLPNQPNLKDVLGDDHISFLFSPTCKLVPLLVCLCFN 427
>TC218289
Length = 1586
Score = 26.2 bits (56), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 105 FTFTSFCCIIRLYS--CFCFNLYDG 127
F F C +IRL S C+C N+Y G
Sbjct: 1075 F*FVVRCVVIRLCSITCYCHNIYGG 1149
>TC222176
Length = 377
Score = 25.8 bits (55), Expect = 5.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +1
Query: 97 NNNNVSSNFTFTSFCCIIRLYSCFC 121
N+N N F CC I + C C
Sbjct: 184 NDNQSDEN*VFLHICCAIHVLPCLC 258
>TC215775 similar to UP|O22449 (O22449) Multidrug resistance-associated
protein 2, partial (12%)
Length = 973
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 97 NNNNVSSNFTFTSFCCIIRLYSCFCFNLY 125
+NN + F F S C LY C C N+Y
Sbjct: 105 SNNEHCTGFEFFSNCF---LYECICSNIY 28
>AI440842 similar to GP|13022177|gb| protein kinase {Lophopyrum elongatum},
partial (8%)
Length = 422
Score = 25.8 bits (55), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +3
Query: 93 IISENNNNVSSNFTFTSFCCIIRLYSCFCFN 123
I+ +NN +S NFT + +I++ CF F+
Sbjct: 30 ILKQNNETLSGNFTVWNVLLLIKM-KCFYFS 119
>TC224677
Length = 448
Score = 25.8 bits (55), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (55%), Gaps = 4/32 (12%)
Frame = -3
Query: 97 NNNNVSSNFTFTSF----CCIIRLYSCFCFNL 124
N+NN+ +NFT F C+I YS F +L
Sbjct: 413 NSNNLQNNFTLLKFVLFSVCLITNYSSFLNSL 318
>TC228907 similar to GB|AAO39954.1|28372944|BT003726 At5g63130 {Arabidopsis
thaliana;} , partial (53%)
Length = 537
Score = 25.4 bits (54), Expect = 7.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 37 EVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQ 76
EVP + +RPR S +H+ R +PH G + R + Q
Sbjct: 336 EVPPLPITFRRPRRSRLHHLRRGSRKPHRGIRSRFIAENQ 455
>TC218288
Length = 526
Score = 25.4 bits (54), Expect = 7.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 107 FTSFCCIIRLYS--CFCFNLYDG 127
F C +IRL S C+C N+Y G
Sbjct: 351 FVVRCVVIRLCSITCYCHNIYGG 419
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,498,118
Number of Sequences: 63676
Number of extensions: 88303
Number of successful extensions: 813
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of query: 128
length of database: 12,639,632
effective HSP length: 86
effective length of query: 42
effective length of database: 7,163,496
effective search space: 300866832
effective search space used: 300866832
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC149210.5