BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149210.3 + phase: 0
(195 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB... 291 2e-79
TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%) 290 2e-79
TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 288 8e-79
TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding prote... 288 1e-78
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete 196 4e-51
TC215025 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 195 1e-50
TC225644 UP|Q40203 (Q40203) RAB1C, complete 189 9e-49
TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, co... 186 6e-48
TC216317 UP|Q43462 (Q43462) Rab7p protein, complete 183 5e-47
TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete 181 1e-46
TC221792 UP|Q39861 (Q39861) GTP binding protein, complete 179 6e-46
TC203411 UP|Q41023 (Q41023) Small GTP-binding protein, partial (... 176 8e-45
TC205442 UP|Q40208 (Q40208) RAB2A, complete 148 1e-36
TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A... 148 1e-36
TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 147 3e-36
TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 146 7e-36
TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, pa... 145 2e-35
TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding prot... 144 3e-35
TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 144 3e-35
TC229079 homologue to UP|Q40200 (Q40200) RAB11J, complete 141 2e-34
>TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB8-1,
complete
Length = 1129
Score = 291 bits (744), Expect = 2e-79
Identities = 150/193 (77%), Positives = 166/193 (85%), Gaps = 3/193 (1%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQERFRTITTA
Sbjct: 214 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 393
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYDVTDE+SFNNI NWIR+IEQH+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 394 YYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN-VNKILVGNKADMDESKRAVPTS 570
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL--PDSKKTPSRIRINK-HNNA 182
KGQALA++YGIKFFETSAKTN+NV+E FFSIARDIKQRL DSK P I+IN+ A
Sbjct: 571 KGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTDSKAEPQTIKINQPDQTA 750
Query: 183 TAARGSQKSECCG 195
T +QKS CCG
Sbjct: 751 TGGLAAQKSACCG 789
>TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%)
Length = 1071
Score = 290 bits (743), Expect = 2e-79
Identities = 150/193 (77%), Positives = 167/193 (85%), Gaps = 3/193 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IE DGK+I LQ+WDTAGQERFRTITTA
Sbjct: 218 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTA 397
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYDVTDESSFNNI NWIR+IEQH+SDN VNK+LVGNK DMDESKR VP S
Sbjct: 398 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRVVPTS 574
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL--PDSKKTPSRIRINKH-NNA 182
KGQALA++YGIKFFETSAKTNLNV+E FFSIARDIKQRL DSK P+ I+IN ++A
Sbjct: 575 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHA 754
Query: 183 TAARGSQKSECCG 195
TA +QKS CCG
Sbjct: 755 TAGEVAQKSACCG 793
>TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (87%)
Length = 895
Score = 288 bits (738), Expect = 8e-79
Identities = 147/189 (77%), Positives = 163/189 (85%), Gaps = 2/189 (1%)
Frame = +2
Query: 9 GKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTAYYR 68
GKS L RFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQERFRTITTAYYR
Sbjct: 44 GKSCLXXRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 223
Query: 69 GAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFSKGQ 128
GAMGILLVYDVTDE+SFNNI NWIR+IEQH+SDN VNKILVGNK DMDESKRAVP SKGQ
Sbjct: 224 GAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN-VNKILVGNKADMDESKRAVPTSKGQ 400
Query: 129 ALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL--PDSKKTPSRIRINKHNNATAAR 186
ALA++YGIKFFETSAKTNLNV+E FFSIARDIKQRL DSK PS I+IN+ + A +
Sbjct: 401 ALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPSTIKINQDQSGGAGQ 580
Query: 187 GSQKSECCG 195
+QKS CCG
Sbjct: 581 AAQKSACCG 607
>TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding protein, complete
Length = 1011
Score = 288 bits (737), Expect = 1e-78
Identities = 148/193 (76%), Positives = 168/193 (86%), Gaps = 3/193 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELD K+I LQ+WDTAGQERFRTITTA
Sbjct: 179 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDSKRIKLQIWDTAGQERFRTITTA 358
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYDVTDE+SFNNI NWIR+IEQH+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 359 YYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN-VNKILVGNKADMDESKRAVPTS 535
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL--PDSKKTPSRIRINKHNNAT 183
KGQALA++YGIKFFETSAKTN+NV+E FFSIARDIKQRL DS+ P I+IN+ + AT
Sbjct: 536 KGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAT 715
Query: 184 A-ARGSQKSECCG 195
+ + +QKS CCG
Sbjct: 716 SGGQPAQKSACCG 754
>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
Length = 932
Score = 196 bits (499), Expect = 4e-51
Identities = 102/192 (53%), Positives = 135/192 (70%), Gaps = 3/192 (1%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD + SYI+T+G+D+K R +E DGK I LQ+WDTAGQERFRTIT++
Sbjct: 190 SGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS 369
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTDE SFNN+ W+ I++++SDN VNK+LVGNK D+ E+ RAV +
Sbjct: 370 YYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDN-VNKLLVGNKCDL-EANRAVSYE 543
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL---PDSKKTPSRIRINKHNNA 182
+A A++ GI F ETSAK NV++AF ++A IK R+ P + P ++I A
Sbjct: 544 TAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPANNARPPTVQIRGQPVA 723
Query: 183 TAARGSQKSECC 194
QK CC
Sbjct: 724 ------QKGGCC 741
>TC215025 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (71%)
Length = 903
Score = 195 bits (496), Expect = 1e-50
Identities = 109/159 (68%), Positives = 124/159 (77%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQERFRTITTA
Sbjct: 373 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 552
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYD TDE+SFNNI NWIR+IEQH+SDN VNKIL G K+ ++K AVP S
Sbjct: 553 YYRGAMGILLVYDGTDEASFNNIRNWIRNIEQHASDN-VNKILGGTKLIWMKAK-AVPTS 726
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL 164
K + IKFFET A+ E FFS AR + QRL
Sbjct: 727 KASPGWMGW-IKFFETRARQI*TWREVFFSKARKLNQRL 840
>TC225644 UP|Q40203 (Q40203) RAB1C, complete
Length = 1161
Score = 189 bits (479), Expect = 9e-49
Identities = 96/192 (50%), Positives = 135/192 (70%), Gaps = 3/192 (1%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRF+D + SYI+T+G+D+K R +E DGK I LQ+WDTAGQERFRTIT++
Sbjct: 223 SGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS 402
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTD+ SFNN+ W+ I++++S+N VNK+LVGNK D+ +K V +
Sbjct: 403 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANK-VVSYE 576
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL---PDSKKTPSRIRINKHNNA 182
+A A++ GI F ETSAK NV++AF ++A +IK R+ P + P ++I
Sbjct: 577 TAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIR----- 741
Query: 183 TAARGSQKSECC 194
+QK+ CC
Sbjct: 742 -GQPVNQKAGCC 774
>TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, complete
Length = 1106
Score = 186 bits (472), Expect = 6e-48
Identities = 97/192 (50%), Positives = 129/192 (66%), Gaps = 3/192 (1%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRF+D + SYI+T+G+D+K R +E DGK I LQ+WDTAGQERFRTIT++
Sbjct: 181 SGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS 360
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTDE SFNN+ W+ I++++SDN VNK+LVGNK D+ + R V +
Sbjct: 361 YYRGAHGIIIVYDVTDEDSFNNVKQWLSEIDRYASDN-VNKLLVGNKSDL-TANRVVSYD 534
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATAA 185
+ A++ GI F ETSAK NV++AF +++ IK R+ N
Sbjct: 535 TAKEFADQIGIPFMETSAKDATNVEDAFMAMSAAIKNRMASQPSAN-----NARPPTVQI 699
Query: 186 RG---SQKSECC 194
RG QKS CC
Sbjct: 700 RGQPVGQKSGCC 735
>TC216317 UP|Q43462 (Q43462) Rab7p protein, complete
Length = 1090
Score = 183 bits (464), Expect = 5e-47
Identities = 93/193 (48%), Positives = 134/193 (69%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS LLLRF+D + SYI+T+G+D+K R +EL+GK + LQ+WDTAGQERFRTIT++
Sbjct: 84 SSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSS 263
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVT+ SFNN+ W+ I+++++D + K+LVGNK D+ ++K V
Sbjct: 264 YYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVC-KLLVGNKSDLVDNK-VVDSL 437
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATAA 185
+A A++ GI F ETSAK ++NV++AF ++A +IK KK S+ K +
Sbjct: 438 TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK------KKMGSQTTTGKSAESVQM 599
Query: 186 RGS---QKSECCG 195
+G QKS CCG
Sbjct: 600 KGQPIPQKSNCCG 638
>TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete
Length = 860
Score = 181 bits (460), Expect = 1e-46
Identities = 92/193 (47%), Positives = 133/193 (68%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS LLLRF+D + SYI+T+G+D+K R +EL+GK + LQ+WDTAGQERFRTIT++
Sbjct: 129 SSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSS 308
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVT+ SFNN+ W+ I+++++D++ K+LVGNK D+ ++K V
Sbjct: 309 YYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVC-KLLVGNKSDLVDNK-VVDSL 482
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATAA 185
+A A++ GI F ETSAK ++NV++AF ++ +IK KK S+ K
Sbjct: 483 TAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIK------KKMGSQTTAGKSAETVQM 644
Query: 186 RGS---QKSECCG 195
+G QKS CCG
Sbjct: 645 KGQPIPQKSNCCG 683
>TC221792 UP|Q39861 (Q39861) GTP binding protein, complete
Length = 1005
Score = 179 bits (455), Expect = 6e-46
Identities = 101/207 (48%), Positives = 133/207 (63%), Gaps = 18/207 (8%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD + SYI+T+G+D+K R +E DGK I LQ+WDTAGQERFRTIT++
Sbjct: 175 SGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS 354
Query: 66 YYRGAMGILLVYDVTD-ESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMD-------- 116
YYRGA GI++VYDVTD E SFNN+ W+ I++++SDN VNK+LVGNK D++
Sbjct: 355 YYRGAHGIIIVYDVTDGEESFNNVKQWLSEIDRYASDN-VNKLLVGNKCDLEANRAVSNI 531
Query: 117 -----ESKRAVP-FSKGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL---PDS 167
E+ RAV +A A+ GI F ETSAK NV++AF ++ IK R+ P +
Sbjct: 532 ETADLEANRAVSNIETAKAFADGIGIPFMETSAKDATNVEQAFMAMTASIKDRMASQPAN 711
Query: 168 KKTPSRIRINKHNNATAARGSQKSECC 194
P ++I A QK CC
Sbjct: 712 NARPPTVQIRGQPVA------QKGGCC 774
>TC203411 UP|Q41023 (Q41023) Small GTP-binding protein, partial (59%)
Length = 538
Score = 176 bits (445), Expect = 8e-45
Identities = 87/104 (83%), Positives = 96/104 (91%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQERFRTITTA
Sbjct: 228 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 407
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILV 109
YYRGAMGILLVYDVTDE+SFNNI NWIR+IEQH+SDN VNKILV
Sbjct: 408 YYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN-VNKILV 536
>TC205442 UP|Q40208 (Q40208) RAB2A, complete
Length = 1159
Score = 148 bits (374), Expect = 1e-36
Identities = 74/160 (46%), Positives = 107/160 (66%)
Frame = +2
Query: 7 GVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTAY 66
GVGKS LLL+F+D F + T+G+++ R I +D K I LQ+WDTAGQE FR+IT +Y
Sbjct: 143 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 322
Query: 67 YRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFSK 126
YRGA G LLVYD+T +FN++ +W+ QH++ N + +L+GNK D+ +RAV +
Sbjct: 323 YRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDL-AHRRAVSTEE 496
Query: 127 GQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPD 166
G+ A ++G+ F E SAKT NV+EAF A I +++ D
Sbjct: 497 GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 616
>TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A like
protein) (At4g17170), partial (90%)
Length = 728
Score = 148 bits (374), Expect = 1e-36
Identities = 74/160 (46%), Positives = 107/160 (66%)
Frame = +1
Query: 7 GVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTAY 66
GVGKS LLL+F+D F + T+G+++ R I +D K I LQ+WDTAGQE FR+IT +Y
Sbjct: 205 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 384
Query: 67 YRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFSK 126
YRGA G LLVYD+T +FN++ +W+ QH++ N + +L+GNK D+ +RAV +
Sbjct: 385 YRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDL-AHRRAVSTEE 558
Query: 127 GQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPD 166
G+ A ++G+ F E SAKT NV+EAF A I +++ D
Sbjct: 559 GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 678
>TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1243
Score = 147 bits (371), Expect = 3e-36
Identities = 79/196 (40%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS++L RF+ + F +T+G+++ R ++++GK + Q+WDTAGQER+R IT+A
Sbjct: 300 SGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 479
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYD+T +F+N+ W+R + H+ NIV ++ GNK D+ RAV
Sbjct: 480 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLSH-LRAVSED 653
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI-----KQRLPDSKKTPSRIRINKHN 180
GQALA + G+ F ETSA N+++AF +I +I K+ L + I +
Sbjct: 654 DGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAAVGTILPGQGT 833
Query: 181 --NATAARGSQKSECC 194
N A G+ K CC
Sbjct: 834 TINVGDASGNTKRGCC 881
>TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1240
Score = 146 bits (368), Expect = 7e-36
Identities = 70/155 (45%), Positives = 106/155 (68%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS++L RF+ + F +T+G+++ R ++++GK + Q+WDTAGQER+R IT+A
Sbjct: 321 SGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 500
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYD+T +F+N+ W+R + H+ NIV ++ GNK D+ RAV
Sbjct: 501 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLSH-LRAVSED 674
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI 160
GQALA + G+ F ETSA N+++AF +I +I
Sbjct: 675 DGQALAEREGLSFLETSALEATNIEKAFQTILTEI 779
>TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, partial (95%)
Length = 853
Score = 145 bits (365), Expect = 2e-35
Identities = 74/193 (38%), Positives = 124/193 (63%), Gaps = 4/193 (2%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS+LL RF+ + F ++ T+G++++ + +E+DGK+I Q+WDTAGQERFR +T+A
Sbjct: 176 SAVGKSNLLSRFARNEFDSNSKATIGVEFQTQLVEIDGKEIKAQIWDTAGQERFRAVTSA 355
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G L+VYD++ +F++I W++ + +D+ V ++LVGNK D+ E+ R V
Sbjct: 356 YYRGAVGALVVYDISRRGTFDSIKRWLQELTT-QNDSTVARMLVGNKCDL-ENIREVSTE 529
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARD----IKQRLPDSKKTPSRIRINKHNN 181
+G++LA + G+ F ETSA NV AF + R+ I +++ +S + + +N+ +
Sbjct: 530 EGKSLAEEEGLFFMETSALDATNVQTAFEIVIREIYNNISRKVLNSDSYKAELSVNRVSL 709
Query: 182 ATAARGSQKSECC 194
A Q CC
Sbjct: 710 VNGAGSKQGPSCC 748
>TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding protein GB2),
complete
Length = 939
Score = 144 bits (362), Expect = 3e-35
Identities = 71/160 (44%), Positives = 105/160 (65%)
Frame = +3
Query: 7 GVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTAY 66
GVGKS LLL+F+D F + T+G+++ R + +D + I LQ+WDTAGQE FR+IT +Y
Sbjct: 174 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIWDTAGQESFRSITRSY 353
Query: 67 YRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFSK 126
YRGA G LLVYD+T +FN++ +W+ QH++ N + +L+GNK D+ +RAV +
Sbjct: 354 YRGAAGALLVYDITRRDTFNHLASWLEDARQHANPN-MTIMLIGNKCDLSH-RRAVSKEE 527
Query: 127 GQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPD 166
G+ A + G+ F E SA+T NV+EAF A I Q + +
Sbjct: 528 GEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIKE 647
>TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 967
Score = 144 bits (362), Expect = 3e-35
Identities = 74/167 (44%), Positives = 112/167 (66%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS+LL RF+ + F +T+G+++ R ++++G+ + Q+WDTAGQER+R IT+A
Sbjct: 239 SGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSA 418
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYDVT ++F N++ W++ + H+ NIV +L+GNK D+ + RAV
Sbjct: 419 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADANIV-IMLIGNKTDL-KHLRAVATE 592
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPS 172
Q A K G+ F ETSA NV+ AF +I +I + + SKK+ S
Sbjct: 593 DAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRII--SKKSLS 727
>TC229079 homologue to UP|Q40200 (Q40200) RAB11J, complete
Length = 1096
Score = 141 bits (356), Expect = 2e-34
Identities = 73/175 (41%), Positives = 117/175 (66%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS+LL RF+ F + +T+G++++ + ++++GK++ Q+WDTAGQERFR +T+A
Sbjct: 374 SAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSA 553
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYD++ +F++I W+ + HS N+V ILVGNK D+ ++ R V +
Sbjct: 554 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSDLKDA-REVATA 727
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHN 180
+G+ALA G+ F ETSA + NV AF ++ ++I L S+K +NK +
Sbjct: 728 EGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNIL--SRKVMISQELNKQD 886
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,225,697
Number of Sequences: 63676
Number of extensions: 72838
Number of successful extensions: 561
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of query: 195
length of database: 12,639,632
effective HSP length: 92
effective length of query: 103
effective length of database: 6,781,440
effective search space: 698488320
effective search space used: 698488320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149210.3