BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149206.9 - phase: 0
(175 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209489 177 3e-45
AW705973 similar to PIR|B86288|B862 F9L1.31 protein - Arabidopsi... 174 1e-44
BE210166 similar to PIR|B86288|B862 F9L1.31 protein - Arabidopsi... 159 5e-40
BG510279 homologue to GP|18650662|gb| ethylene response factor 1... 125 1e-29
TC209957 similar to UP|PZ02_LUPPO (P16146) PPLZ02 protein, parti... 122 9e-29
BE020121 108 2e-24
TC225047 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-... 95 2e-20
TC209581 similar to UP|Q9LKK0 (Q9LKK0) Apetala2 domain-containin... 95 2e-20
TC225042 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-... 95 2e-20
TC231506 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 91 2e-19
TC220118 homologue to UP|Q9SKT1 (Q9SKT1) AP2 domain transcriptio... 91 3e-19
TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 90 6e-19
TC215389 similar to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive eleme... 90 6e-19
TC221817 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 89 8e-19
TC207982 similar to UP|Q8CBH3 (Q8CBH3) Mus musculus 16 days neon... 89 1e-18
TC210075 homologue to PIR|H96667|H96667 AP2-containing DNA-bindi... 89 1e-18
TC217288 homologue to GB|AAS76737.1|45773866|BT012250 At5g13330 ... 89 1e-18
TC220137 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 89 1e-18
TC215390 similar to UP|Q9ZR83 (Q9ZR83) EREBP-3 homolog, partial ... 88 2e-18
TC215663 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-... 86 7e-18
>TC209489
Length = 623
Score = 177 bits (448), Expect = 3e-45
Identities = 93/159 (58%), Positives = 117/159 (73%), Gaps = 11/159 (6%)
Frame = +2
Query: 28 KRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINVENQTNSISSSST----SSKAF 83
KRRVWLGTFETAE AA+AYD+AAILM+G+NAKTNFP + +NQ + +++T S KA
Sbjct: 77 KRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTS-KNQAEADDNNNTDTFLSPKAL 253
Query: 84 SAVLSAKLRKCCKFPSPSLTCLRLDAENSHIGVWQKGAGPRSESNWIMMVELERK----- 138
S +LS KLRK CK P+PSLTCLRLDA+NSHIGVWQKGAGP S SNW+M +EL +K
Sbjct: 254 SELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRLELGKKQITEE 433
Query: 139 --KSASVPEKAKPEELSKNGLDDEQKIALQMIEELLNRN 175
+S P+ + N +++E ++ALQMIEELLN N
Sbjct: 434 GSESTESPQSSTNGATENNEVEEEDRVALQMIEELLNWN 550
>AW705973 similar to PIR|B86288|B862 F9L1.31 protein - Arabidopsis thaliana,
partial (46%)
Length = 411
Score = 174 bits (442), Expect = 1e-44
Identities = 88/108 (81%), Positives = 96/108 (88%), Gaps = 3/108 (2%)
Frame = +3
Query: 1 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKT 60
MV S+KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAA+AYDEAAILMSGRNAKT
Sbjct: 90 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKT 269
Query: 61 NFPINVENQ---TNSISSSSTSSKAFSAVLSAKLRKCCKFPSPSLTCL 105
NFP+ ENQ +S ++SS+S+ SAVLSAKLRKCCK PSPSLTCL
Sbjct: 270 NFPVG-ENQIVGNHSSNTSSSSTTTLSAVLSAKLRKCCKSPSPSLTCL 410
>BE210166 similar to PIR|B86288|B862 F9L1.31 protein - Arabidopsis thaliana,
partial (48%)
Length = 385
Score = 159 bits (403), Expect = 5e-40
Identities = 81/120 (67%), Positives = 94/120 (77%), Gaps = 13/120 (10%)
Frame = +2
Query: 1 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKT 60
MV ++KFRGV QRHWGSWVSEIRHP LKRRVWLGTFETAEEAA+AYD+AAILMSGRNAKT
Sbjct: 32 MVQTRKFRGVXQRHWGSWVSEIRHPFLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKT 211
Query: 61 NFPI-------------NVENQTNSISSSSTSSKAFSAVLSAKLRKCCKFPSPSLTCLRL 107
NFPI ++++T+ SSS+T+SK +L AKLRKC K PSPS+TCLRL
Sbjct: 212 NFPILQTPEGDPKTTLTPIDHETS--SSSTTTSKELEEILHAKLRKCGKLPSPSMTCLRL 385
>BG510279 homologue to GP|18650662|gb| ethylene response factor 1
{Lycopersicon esculentum}, partial (44%)
Length = 418
Score = 125 bits (313), Expect = 1e-29
Identities = 61/89 (68%), Positives = 70/89 (78%)
Frame = +2
Query: 6 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPIN 65
++RGVRQRHWGSWVSEIRHP+LK R+WLGTFETAE+AA+AYDEAA LM G A+TNFP N
Sbjct: 2 RYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFN 181
Query: 66 VENQTNSISSSSTSSKAFSAVLSAKLRKC 94
N SSS+SSK SA L+AKL C
Sbjct: 182----PNVPHSSSSSSKLLSATLTAKLHSC 256
>TC209957 similar to UP|PZ02_LUPPO (P16146) PPLZ02 protein, partial (86%)
Length = 812
Score = 122 bits (306), Expect = 9e-29
Identities = 79/180 (43%), Positives = 101/180 (55%), Gaps = 15/180 (8%)
Frame = +3
Query: 9 GVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINVEN 68
GVRQRHWGSWVSEIRHP+LK R+WLGTFETAE+AA+AYDEAA LM G A+TNFP N
Sbjct: 51 GVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPN- 227
Query: 69 QTNSISSSSTSSKAFSAVLSAKLRKCCKFPSPSLTCLRLDAENSHIGVWQKGAGPRSESN 128
+S S+SSK SA L+AKL +C SL R ++ V S SN
Sbjct: 228 -----ASQSSSSKLLSATLTAKLHRCY---MASLQMTRPSSQAEPQRVASPNVITSSASN 383
Query: 129 WIMMVELERKKSASVPEKAKPEELSKNGLDDEQKIAL---------------QMIEELLN 173
+ M + ++ +P+K + EE G +K+ + QMIEELL+
Sbjct: 384 FSM--KSNETETLLLPQKRQEEEQEAEGNWVFKKVKVENAQQFKPLEEDHIEQMIEELLH 557
>BE020121
Length = 289
Score = 108 bits (269), Expect = 2e-24
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +3
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
+++RGVRQRHWGSWVSEIRHP+LK R+WLGTFETAE+AA+AYDEAA LM G A+TNFP
Sbjct: 99 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPY 278
Query: 65 N 65
N
Sbjct: 279 N 281
>TC225047 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-binding
factor 2, partial (42%)
Length = 1886
Score = 94.7 bits (234), Expect = 2e-20
Identities = 46/93 (49%), Positives = 63/93 (67%)
Frame = +3
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTF+TAEEAA AYD+AA + G A+ NFP
Sbjct: 903 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 1082
Query: 64 INVENQTNSISSSSTSSKAFSAVLSAKLRKCCK 96
N+ +Q +S+ K + + AKL+ C+
Sbjct: 1083-NLRHQGSSVGGDFGEYKPLHSAVDAKLQAICE 1178
>TC209581 similar to UP|Q9LKK0 (Q9LKK0) Apetala2 domain-containing protein,
partial (44%)
Length = 1113
Score = 94.7 bits (234), Expect = 2e-20
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = +1
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTFETAEEAA AYD AA + G NA+ NFP
Sbjct: 211 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFP 390
Query: 64 INVENQTNSISSSSTSSKAFSAVLSAKLRKCCKFPSPSLTCLRLD 108
++ + + + K + + AKL+ C+ L L+ D
Sbjct: 391 -HLRHHGARVYGEFGNYKPLPSAVDAKLQAICQSLGTKLQKLKTD 522
>TC225042 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-binding
factor 2, partial (40%)
Length = 1705
Score = 94.7 bits (234), Expect = 2e-20
Identities = 46/93 (49%), Positives = 63/93 (67%)
Frame = +3
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTF+TAEEAA AYD+AA + G A+ NFP
Sbjct: 894 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 1073
Query: 64 INVENQTNSISSSSTSSKAFSAVLSAKLRKCCK 96
N+ +Q +S+ K + + AKL+ C+
Sbjct: 1074-NLRHQGSSVGGDFGEYKPLHSAVDAKLQAICE 1169
>TC231506 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (29%)
Length = 934
Score = 91.3 bits (225), Expect = 2e-19
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 3/86 (3%)
Frame = +1
Query: 6 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPIN 65
KFRGVRQR WG W +EIR P ++RVWLGTF+TAEEAA YD+AA+ + G NA TNFP++
Sbjct: 589 KFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAAAVYDDAALKLKGPNAVTNFPLS 768
Query: 66 VENQTNSISS---SSTSSKAFSAVLS 88
+T ++ ++ S + FS+ S
Sbjct: 769 AAGKTEHDTAPPEAAFSGEGFSSPTS 846
>TC220118 homologue to UP|Q9SKT1 (Q9SKT1) AP2 domain transcription factor,
partial (25%)
Length = 1065
Score = 90.9 bits (224), Expect = 3e-19
Identities = 44/86 (51%), Positives = 55/86 (63%)
Frame = +2
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTF+TAE+AA AYD A + G NA+ NFP
Sbjct: 14 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFP 193
Query: 64 INVENQTNSISSSSTSSKAFSAVLSA 89
N+ +A S VLSA
Sbjct: 194ELFLNKDKKEEQQQQEQEASSPVLSA 271
>TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (25%)
Length = 925
Score = 89.7 bits (221), Expect = 6e-19
Identities = 51/118 (43%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Frame = +3
Query: 6 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPIN 65
KFRGVRQR WG W +EIR P ++R+WLGTF+TAEEAA YD AA+ + G NA TNFP+
Sbjct: 222 KFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFPLA 401
Query: 66 VENQTNS-------ISS--SSTSSKAFSAVLSAKLRKCCKFPSPSLTCLRLDAENSHI 114
E S +SS ++ S ++ S +C P L +DA HI
Sbjct: 402 PEATAQSPPLAADNLSSDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDVDAFGFHI 575
>TC215389 similar to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (62%)
Length = 1172
Score = 89.7 bits (221), Expect = 6e-19
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = +3
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINV 66
FRGVR+R WG + +EIR P K RVWLGTF+TAEEAA+AYD AA G AKTNFP+ +
Sbjct: 213 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPL 392
Query: 67 ENQTNSISSSSTSSKAFS 84
EN NS S S++ ++ S
Sbjct: 393 ENVKNSSPSQSSTVESSS 446
>TC221817 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (24%)
Length = 1008
Score = 89.4 bits (220), Expect = 8e-19
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = +1
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
+K+RGVRQR WG W +EIR P RVWLGTFETAE AA+AYDEAA+ G AK NFP
Sbjct: 508 RKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGSKAKLNFPE 687
Query: 65 NV 66
NV
Sbjct: 688 NV 693
>TC207982 similar to UP|Q8CBH3 (Q8CBH3) Mus musculus 16 days neonate
cerebellum cDNA, RIKEN full-length enriched library,
clone:9630027A13 product:RAB5A, member RAS oncogene
family, full insert sequence. (Fragment), partial (6%)
Length = 770
Score = 89.0 bits (219), Expect = 1e-18
Identities = 39/64 (60%), Positives = 48/64 (74%)
Frame = +2
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+ KFRGVRQR WG W +EIR P ++R+WLGTF+TAEEAA YD AA+ + G NA TNFP
Sbjct: 503 NNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFP 682
Query: 64 INVE 67
+ E
Sbjct: 683 LTPE 694
>TC210075 homologue to PIR|H96667|H96667 AP2-containing DNA-binding protein,
51686-52693 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (40%)
Length = 1024
Score = 89.0 bits (219), Expect = 1e-18
Identities = 44/92 (47%), Positives = 59/92 (63%)
Frame = +2
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
K +RGVRQRHWG WV+EIR P + RVWLGT++TAE AA AYD AA + G A+ NFP
Sbjct: 230 KLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP- 406
Query: 65 NVENQTNSISSSSTSSKAFSAVLSAKLRKCCK 96
N+++ T S A + + AK++ C+
Sbjct: 407 NLKDPTKLGFGDSARLNALKSSVDAKIQAICQ 502
>TC217288 homologue to GB|AAS76737.1|45773866|BT012250 At5g13330 {Arabidopsis
thaliana;} , partial (33%)
Length = 1315
Score = 88.6 bits (218), Expect = 1e-18
Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Frame = +3
Query: 2 VHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTN 61
+ K +RGVRQR WG W +EIR P RVWLGTF+TAE AA AYD AA+ G AK N
Sbjct: 474 IRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLN 653
Query: 62 FPINV-------ENQTNSISSSSTSSKAFSAV 86
FP V N NS SSS+ ++++ S++
Sbjct: 654 FPERVVMPIPPQTNNNNSTSSSAPTTQSSSSL 749
>TC220137 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (17%)
Length = 757
Score = 88.6 bits (218), Expect = 1e-18
Identities = 39/62 (62%), Positives = 47/62 (74%)
Frame = +1
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
+K+RGVRQR WG W +EIR P RVWLGTFETAE+AA+AYD+A++ G AK NFP
Sbjct: 67 RKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDQASLRFRGNKAKLNFPE 246
Query: 65 NV 66
NV
Sbjct: 247 NV 252
>TC215390 similar to UP|Q9ZR83 (Q9ZR83) EREBP-3 homolog, partial (76%)
Length = 975
Score = 87.8 bits (216), Expect = 2e-18
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = +3
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINV 66
FRGVR+R WG + +EIR P K RVWLGTF+TAEEAA+AYD AA G AKTNFP+
Sbjct: 87 FRGVRKRPWGRFAAEIRDPAKKTRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPS 266
Query: 67 ENQTNSISSSSTSSKAFS 84
EN N+ S S++ ++ S
Sbjct: 267 ENFKNASPSQSSTVESSS 320
>TC215663 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-binding
factor 2, partial (33%)
Length = 1777
Score = 86.3 bits (212), Expect = 7e-18
Identities = 46/92 (50%), Positives = 58/92 (63%)
Frame = +2
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTF+TAEEAA AYD+AA + G A+ NFP
Sbjct: 875 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDLARLNFP 1054
Query: 64 INVENQTNSISSSSTSSKAFSAVLSAKLRKCC 95
N++ S K A + AKL C
Sbjct: 1055-NLKG-----SCPGEEYKPMQAAVDAKLDAIC 1132
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,307,075
Number of Sequences: 63676
Number of extensions: 114882
Number of successful extensions: 900
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of query: 175
length of database: 12,639,632
effective HSP length: 91
effective length of query: 84
effective length of database: 6,845,116
effective search space: 574989744
effective search space used: 574989744
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC149206.9