BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149205.3 + phase: 0 /pseudo
(523 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231922 73 4e-13
TC233392 72 6e-13
TC221865 70 2e-12
BG239687 67 2e-11
CO986021 67 3e-11
TC231841 65 6e-11
TC213061 65 7e-11
CO979823 65 7e-11
CO984521 63 3e-10
BE660043 62 6e-10
BG404993 61 1e-09
TC211809 48 7e-09
TC223713 58 9e-09
TC233956 57 3e-08
TC222557 48 3e-08
TC222789 56 4e-08
CA851073 53 3e-07
BI316892 52 5e-07
BF595917 52 6e-07
BM527030 51 1e-06
>TC231922
Length = 803
Score = 72.8 bits (177), Expect = 4e-13
Identities = 41/146 (28%), Positives = 76/146 (51%), Gaps = 2/146 (1%)
Frame = -3
Query: 377 WQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTSQE*P 436
++WRR L+ +E + + + + +S+Q D W +D Y+ + Y +L P
Sbjct: 540 FKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTKSAYRLLMPSISP 361
Query: 437 HVHQNM-ELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRIC-VTGCGHVED 494
+ + +++WH ++P + ++ + RL DRLPT+ NL+ R I ++D +C + GC H E+
Sbjct: 360 APSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIP-IQDIMCPLCGCQH-EE 187
Query: 495 TTHMFLSCPIFGALLSMVQTWVGVEG 520
H+F C + L W+ V G
Sbjct: 186 AGHLFFHCKMTKGLWWESMRWIRVIG 109
>TC233392
Length = 1145
Score = 72.0 bits (175), Expect = 6e-13
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = -1
Query: 403 LQELETDRWMWLSDQIRGYTVRGVYDMLTSQ-E*PHVHQNMELIWHKQVPLKVSILALRL 461
+Q+ D W+W + Y+ R Y +L E ++ +W ++P K SI A RL
Sbjct: 674 IQQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIFAWRL 495
Query: 462 LRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSCPIFGALLSMVQTWVGVEGV 521
+RDRLPTKSNL R + +ED +C ED +H+FL C L QTWV GV
Sbjct: 494 IRDRLPTKSNLHRRQVV-LEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVRSLGV 318
>TC221865
Length = 1045
Score = 70.1 bits (170), Expect = 2e-12
Identities = 44/147 (29%), Positives = 73/147 (48%), Gaps = 5/147 (3%)
Frame = -3
Query: 373 WWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTS 432
W +QWRR L+ E D + + + TD W+W S+ Y+ R Y ++
Sbjct: 776 WEWKFQWRRPLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQH 597
Query: 433 QE*P-HVHQNMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGH 491
+ + E IW ++P K +I A RL++DRLPTK+NL R + + +C+ +
Sbjct: 596 EAAKANTDPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQ-LNGTLCLFCRNY 420
Query: 492 VEDTTHMFLSC----PIFGALLSMVQT 514
E+ +H+F SC P++ LS + T
Sbjct: 419 EEEASHLFFSCTKTQPVWWESLSWINT 339
>BG239687
Length = 443
Score = 67.0 bits (162), Expect = 2e-11
Identities = 37/130 (28%), Positives = 65/130 (49%), Gaps = 1/130 (0%)
Frame = -3
Query: 354 SSCQ*SNHCEEHVLVGGGGWWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMW 413
++C+ C + + W W R+L+ WE +LV + + L V ++ E D W+W
Sbjct: 393 TNCKIPPPCLSFLFI**SRWR*KTNWGRNLFEWERELVAKFLEELHLVEVK*NEEDSWVW 214
Query: 414 LSDQIRGYTVRGVYDMLTSQE*PHVHQN-MELIWHKQVPLKVSILALRLLRDRLPTKSNL 472
S++ GY VR Y ++ H N ++ +W +P V+ + LL+DR+ TK NL
Sbjct: 213 KSNESGGYNVRDAYMLILHDGLVDEHANILKQVWKASIPSNVAAFSWSLLQDRIQTKENL 34
Query: 473 ADRGITFVED 482
+ R I ++
Sbjct: 33 SKRRIELTDN 4
>CO986021
Length = 900
Score = 66.6 bits (161), Expect = 3e-11
Identities = 35/131 (26%), Positives = 65/131 (48%), Gaps = 1/131 (0%)
Frame = -1
Query: 373 WWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTS 432
W ++WRR+L+ E + D + +S+ + D +W +D Y+ + Y +L
Sbjct: 891 WNWDFKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLLLP 712
Query: 433 QE*PHVHQ-NMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGH 491
P H N +++W ++P + + + RL RDRL ++NL R + ++D +C H
Sbjct: 711 NNRPGQHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHVA-LQDIMCPLCGNH 535
Query: 492 VEDTTHMFLSC 502
E+ H+F C
Sbjct: 534 QEEAGHLFFHC 502
>TC231841
Length = 791
Score = 65.5 bits (158), Expect = 6e-11
Identities = 38/120 (31%), Positives = 60/120 (49%), Gaps = 1/120 (0%)
Frame = +3
Query: 403 LQELETDRWMWLSDQIRGYTVRGVYDMLTSQE*PHVHQNM-ELIWHKQVPLKVSILALRL 461
+Q + D+W+W +D YT + Y +L + + E +W ++P K++I A RL
Sbjct: 45 IQPQQGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIFAWRL 224
Query: 462 LRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSCPIFGALLSMVQTWVGVEGV 521
+RDRLPT+SNL + I V+D C E H+F C + +WV + GV
Sbjct: 225 IRDRLPTRSNLRRKQIE-VDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGV 401
>TC213061
Length = 823
Score = 65.1 bits (157), Expect = 7e-11
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Frame = +2
Query: 372 GWWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELE--------TDRWMWLSDQIRGYTV 423
GW +QWRR L+ E ++ L +QE+E D+W+W ++ Y
Sbjct: 17 GWEWQFQWRRPLFDSEIEM--------LVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLA 172
Query: 424 RGVYDMLTSQE*PHVHQNMEL--IWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVE 481
R Y ++ + P Q+ E +W +VP+KV++ A RLL+D LPT+ NL + + +
Sbjct: 173 RSAYRVIR-EGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRVE-LH 346
Query: 482 DRICVTGCGHVEDTTHMFLSC----PIFGALLSMVQ 513
+ +C E +H+F C PI+ LS V+
Sbjct: 347 EYVCPLCRSMDESASHLFFHCSKILPIWWESLSWVK 454
>CO979823
Length = 853
Score = 65.1 bits (157), Expect = 7e-11
Identities = 41/154 (26%), Positives = 71/154 (45%), Gaps = 2/154 (1%)
Frame = -2
Query: 368 VGGGGWWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVY 427
+ GW WRR E + + + + D+W+W + Y+ + Y
Sbjct: 825 ITNSGWE*QLNWRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHYSTKSGY 646
Query: 428 DMLTSQE*PHVHQ-NMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICV 486
+L + + + IW ++P K ++ A RL+RDRLPTKSNL R + V+D +C
Sbjct: 645 HVLWGELTEEIQDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQV-MVQDMVCP 469
Query: 487 TGCGHVED-TTHMFLSCPIFGALLSMVQTWVGVE 519
C ++E+ H+F +C L +WV ++
Sbjct: 468 L-CNNIEEGAAHLFFNCTKTLPLWWESMSWVNLK 370
>CO984521
Length = 716
Score = 63.2 bits (152), Expect = 3e-10
Identities = 44/134 (32%), Positives = 69/134 (50%), Gaps = 15/134 (11%)
Frame = -2
Query: 403 LQELE--------TDRWMWLSDQIRGYTVRGVYDMLTSQE*PHVHQNMEL------IWHK 448
LQ+LE +D+W W ++ Y+ + Y L HV E +W
Sbjct: 688 LQQLEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALH-----HVTVGEEQDGKFKELWKL 524
Query: 449 QVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDT-THMFLSCPIFGA 507
+VPLKV+I A RL++D+LPTK+NL + + +++ +C C VE+T +H+F C
Sbjct: 523 RVPLKVAIFAWRLIQDKLPTKANLRKKRVE-LQEYLCPL-CRSVEETASHLFFHCSKVSP 350
Query: 508 LLSMVQTWVGVEGV 521
L Q+WV + GV
Sbjct: 349 LWWESQSWVNMMGV 308
>BE660043
Length = 714
Score = 62.0 bits (149), Expect = 6e-10
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = -2
Query: 402 SLQELETDRWMWLSDQIRGYTVRGVYDMLT-SQE*PHVHQNMELIWHKQVPLKVSILALR 460
+LQ+ D W+W + Y+ R Y +L + E ++ + +W ++P K SI A R
Sbjct: 647 ALQQHAADSWVWKPESNGYYSSRNAYILLQGNSEEGNMDDIFKDLWKLKIPAKASIFAGR 468
Query: 461 LLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSC 502
L+RDRLPTKSN+ R I + D +C E +H+F C
Sbjct: 467 LIRDRLPTKSNMRKRQID-INDSLCPFCSIKEETASHLFFDC 345
>BG404993
Length = 412
Score = 60.8 bits (146), Expect = 1e-09
Identities = 35/118 (29%), Positives = 57/118 (47%), Gaps = 5/118 (4%)
Frame = -3
Query: 402 SLQELETDRWMWLSDQIRGYTVRGVYDMLTSQE*PHVHQNMEL-IWHKQVPLKVSILALR 460
++Q+ E D W W +D Y+ + Y++L + + +W ++P K + R
Sbjct: 353 TIQQHEADSWTWKADPSGNYSTKTAYELLQEAIRGDNEDGIFVQLWKLKIPPKAPVFTWR 174
Query: 461 LLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSC----PIFGALLSMVQT 514
L+ DRLPTK NL R + + D +C ED H+F +C P + LS V+T
Sbjct: 173 LINDRLPTKVNLRRRQVE-ISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWESLSWVKT 3
>TC211809
Length = 895
Score = 48.1 bits (113), Expect(2) = 7e-09
Identities = 26/76 (34%), Positives = 38/76 (49%)
Frame = +2
Query: 445 IWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSCPI 504
+W+ ++P K + A RL++DRLPT +NL R + + R C ED H+F C
Sbjct: 281 LWNLKIPSKAIVFAWRLIKDRLPTWTNLRVRQVELNDSR-CPLCNSSEEDAAHLFFHCTK 457
Query: 505 FGALLSMVQTWVGVEG 520
L Q+WV G
Sbjct: 458 TEXLWWETQSWVNSLG 505
Score = 30.0 bits (66), Expect(2) = 7e-09
Identities = 14/47 (29%), Positives = 24/47 (50%)
Frame = +1
Query: 372 GWWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQI 418
GW + WRR L+ E + E + L V++ + D W+W +D +
Sbjct: 58 GWE*NFSWRRPLFDNEIGMAAEFLEELAQVTIHQDRPDVWVWKADSV 198
>TC223713
Length = 420
Score = 58.2 bits (139), Expect = 9e-09
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 1/110 (0%)
Frame = +1
Query: 412 MWLSDQIRGYTVRGVYDMLTSQE*PHVHQN-MELIWHKQVPLKVSILALRLLRDRLPTKS 470
+W +DQ YT + Y+++ E + E + +VP+K ++ A RLLRDRLPTK+
Sbjct: 7 VWEADQSGQYTAQTAYNLMREVEVGGIQDRAFEEL*KLKVPIKFAVFAWRLLRDRLPTKA 186
Query: 471 NLADRGITFVEDRICVTGCGHVEDTTHMFLSCPIFGALLSMVQTWVGVEG 520
NL R I V +R C E+ H+F C + +WV + G
Sbjct: 187 NLHRRQIE-VTNRSCPFCSNMEEEAGHLFFHCSKIIPIWWETSSWVNISG 333
>TC233956
Length = 757
Score = 56.6 bits (135), Expect = 3e-08
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +2
Query: 396 DLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTSQ-E*PHVHQNMELIWHKQVPLKV 454
D + + L D W+W ++ + + Y ++ S+ + H + +W +VP K
Sbjct: 20 DHIHEIRLNNNFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKKLWEIKVPPKA 199
Query: 455 SILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSC----PIFGALLS 510
RLL DRLPTK NL R I VED +C E +H+F +C P++ LS
Sbjct: 200 LSFVWRLLWDRLPTKDNLIKRQIQ-VEDDLCPFCHSQSETASHLFFTCGKIMPLWWEFLS 376
Query: 511 MVQ 513
V+
Sbjct: 377 WVK 385
>TC222557
Length = 1002
Score = 48.1 bits (113), Expect(2) = 3e-08
Identities = 26/82 (31%), Positives = 43/82 (51%)
Frame = +1
Query: 442 MELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLS 501
+E +W ++PLK + A RL+++R+PTK NL R + + + +C E+ +H+F +
Sbjct: 430 LEDLWQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQ-LNNLMCPFCNRQEEEASHLFFN 606
Query: 502 CPIFGALLSMVQTWVGVEGVDS 523
CP L W GV S
Sbjct: 607 CPRILPLWWESLAWTKTVGVFS 672
Score = 28.1 bits (61), Expect(2) = 3e-08
Identities = 15/58 (25%), Positives = 23/58 (38%)
Frame = +3
Query: 373 WWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDML 430
W +WRRHL+ E D + + D W+W + ++ R Y ML
Sbjct: 222 WEWKLEWRRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAYRML 395
>TC222789
Length = 954
Score = 55.8 bits (133), Expect = 4e-08
Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Frame = +2
Query: 418 IRGYTVRGVYDMLTSQE*PHVHQNMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGI 477
+RG V G+ D + E +W +VP+K + A RLLRDRLPTK NL R I
Sbjct: 314 MRGAGVEGIKD-----------KAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQI 460
Query: 478 TFVEDRICVTGCGHVEDTTHMFLSC----PIFGALLSMVQTWVGVEG 520
V DR C ED H+F C PI+ LS WV + G
Sbjct: 461 Q-VMDRSCPFCRNVEEDAGHLFFHCSKIIPIWWESLS----WVNISG 586
>CA851073
Length = 633
Score = 53.1 bits (126), Expect = 3e-07
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Frame = +1
Query: 401 VSLQELETDRWMWLSDQIRGYTVRGVYDMLTSQE*PHVHQN--MELIWHKQVPLKVSILA 458
+ +Q D +W +D Y+ + Y +L + HV + + IW ++P + ++ +
Sbjct: 4 IQIQSHLQDTMVWKADPCGVYSTKSAYRILMTCN-RHVSEANIFKTIWKLKIPPRAAVFS 180
Query: 459 LRLLRDRLPTKSNLADRGITFVEDRICVTGCGH-VEDTTHMFLSCPIFGALLSMVQTWVG 517
RL++DRLPT+ NL R ++ E+ + CG+ E+ H+F +C + L W
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPL--CGYEQEEADHLFFNCKMTRGLWWESMRWNQ 354
Query: 518 VEG 520
+ G
Sbjct: 355 IVG 363
>BI316892
Length = 421
Score = 52.4 bits (124), Expect = 5e-07
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 386 WEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTSQE*PHVHQNMELI 445
WE L+++ LL +V + D W+W YT + Y +L+ N+ ++
Sbjct: 142 WENYLIQQLFLLLNSVIIHHSLADSWVWEPCPTGRYTSKSAYLLLSCDSPLQYSTNIFVV 321
Query: 446 -WHKQVPLKVSILALRLLRDRLPTKSNLADRGI 477
W ++P K S L ++LR+RLPTK NL + I
Sbjct: 322 LWRLKIPHKTSFLIWKILRNRLPTKDNLCKQNI 420
>BF595917
Length = 419
Score = 52.0 bits (123), Expect = 6e-07
Identities = 31/70 (44%), Positives = 42/70 (59%), Gaps = 1/70 (1%)
Frame = +2
Query: 415 SDQIRGYTVRGVYDMLTSQE*PHVHQN-MELIWHKQVPLKVSILALRLLRDRLPTKSNLA 473
+DQ YTV+ Y ++T + E +W+ +VP+KV++ A RLLRDRLPTK NL
Sbjct: 2 ADQSGRYTVQSTYKLMTGEAVEGERDRAFEELWNLKVPIKVAVFAWRLLRDRLPTKVNLY 181
Query: 474 DRGITFVEDR 483
R I V DR
Sbjct: 182 RRQIE-VADR 208
>BM527030
Length = 421
Score = 51.2 bits (121), Expect = 1e-06
Identities = 38/139 (27%), Positives = 56/139 (39%), Gaps = 1/139 (0%)
Frame = +3
Query: 380 RRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTSQE*PHVH 439
RR + W +V + L SL D +W Y VR Y L P
Sbjct: 3 RRPWFQWG*AMVTSFMNKLEGASLVADRQDSLVWKLALTECYFVRDPYLFLIENTNPVYV 182
Query: 440 QNMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVED-RICVTGCGHVEDTTHM 498
IW +P V+I +L +D+LPT+ NL R I E ++C G ED++H+
Sbjct: 183 LFYRSIWMLAIPHNVAIFEWKLSKDKLPTRKNLQCRNILLEEQHQLCPFCSGKEEDSSHL 362
Query: 499 FLSCPIFGALLSMVQTWVG 517
+C + W+G
Sbjct: 363 IFTCSFSYQIWQNCYKWIG 419
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.364 0.164 0.688
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,853,692
Number of Sequences: 63676
Number of extensions: 500928
Number of successful extensions: 9234
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 4018
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 4220
Number of HSP's gapped (non-prelim): 5420
length of query: 523
length of database: 12,639,632
effective HSP length: 102
effective length of query: 421
effective length of database: 6,144,680
effective search space: 2586910280
effective search space used: 2586910280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149205.3