TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149205.14 - phase: 0 /pseudo
         (890 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript...    71  2e-12
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret...    66  8e-11
TC219712 similar to UP|G6PI_SPIOL (O82059) Glucose-6-phosphate i...    30  4.7

>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
           (Fragment) , partial (59%)
          Length = 1077

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 37/100 (37%), Positives = 57/100 (57%)
 Frame = +1

Query: 40  LNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQWM 99
           L++A++A EVI   K   R     +  K+D  KAYD + W++L  +M +M FS KWI+W+
Sbjct: 1   LHSALIANEVIDEAK---RSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWI 171

Query: 100 VVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHL 139
               +S   +VLVN       +  RGLRQG PL+   +++
Sbjct: 172 EECVKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNI 291


>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
           reverse transcriptase, partial (7%)
          Length = 956

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 38/93 (40%), Positives = 54/93 (57%)
 Frame = -3

Query: 45  VAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQWMVVSTE 104
           V  EVI+ +  K  G +  +ALK+DI KA+D +D D+L  ++ K G+S  +  W+ V   
Sbjct: 816 VTSEVINMLDKKVFGGN--LALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIRVILL 643

Query: 105 SVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFY 137
           S   ++ VN E VG     RG+RQG PLS S Y
Sbjct: 642 SAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544


>TC219712 similar to UP|G6PI_SPIOL (O82059) Glucose-6-phosphate isomerase,
           cytosolic  (GPI) (Phosphoglucose isomerase) (PGI)
           (Phosphohexose isomerase) (PHI) , partial (56%)
          Length = 1208

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = +2

Query: 683 VWHSSLEC------GWFMV*CSTCCYSQ*YSYCCYFLSS* 716
           VWH S  C      GW+ +*C  CC+S  +    +FLS+*
Sbjct: 29  VWH*SQ*CFCILGLGWWPI*CLQCCWSIAFIPTIWFLSN* 148


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.368    0.164    0.641 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,081,859
Number of Sequences: 63676
Number of extensions: 708976
Number of successful extensions: 8419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3296
Number of HSP's successfully gapped in prelim test: 330
Number of HSP's that attempted gapping in prelim test: 5011
Number of HSP's gapped (non-prelim): 3876
length of query: 890
length of database: 12,639,632
effective HSP length: 106
effective length of query: 784
effective length of database: 5,889,976
effective search space: 4617741184
effective search space used: 4617741184
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 63 (28.9 bits)