BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.7 - phase: 0
(218 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG156340 190 7e-51
TC215310 similar to GB|AAP37804.1|30725564|BT008445 At2g15890 {A... 31 0.38
BM143435 28 3.2
TC217308 similar to UP|Q944G8 (Q944G8) AT4g30240/F9N11_90, parti... 28 3.2
TC229610 weakly similar to UP|O22512 (O22512) Grr1, partial (52%) 28 4.2
TC203798 homologue to UP|Q6SPR3 (Q6SPR3) Ribosomal protein S6, c... 27 5.5
BQ630604 similar to GP|8656003|gb|A Contains similarity to formi... 27 5.5
TC208175 similar to GB|AAS92332.1|46402460|BT012416 At3g08630 {A... 27 7.2
TC219555 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n... 27 9.4
AW348290 27 9.4
TC216654 27 9.4
TC207001 similar to PIR|F86340|F86340 protein F2D10.34 [imported... 27 9.4
>BG156340
Length = 414
Score = 190 bits (482), Expect(2) = 7e-51
Identities = 89/99 (89%), Positives = 95/99 (95%)
Frame = +3
Query: 119 QLWDQTQDVLVLVEPGTPHGSSIIAQMRSYILWMEERKHRKSSKKNNEVCKDLITEKAGA 178
QLWD T+D+LVLVEPGTPHGS+IIAQMRS+ILWMEERK+RKSS+KNNEVCKDLITEKAGA
Sbjct: 42 QLWDLTRDILVLVEPGTPHGSNIIAQMRSHILWMEERKYRKSSRKNNEVCKDLITEKAGA 221
Query: 179 FVVAPCPHDGTCPLVKSGKYCHFVQRLERTSSQRAYKVS 217
FVVAPCPHDG CPLVKSGKYCHF QRLERTSSQRAYK S
Sbjct: 222 FVVAPCPHDGACPLVKSGKYCHFGQRLERTSSQRAYKRS 338
Score = 27.7 bits (60), Expect(2) = 7e-51
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +1
Query: 105 GEIPSIKDRITIL 117
GEIPSIKDRITI+
Sbjct: 1 GEIPSIKDRITIV 39
>TC215310 similar to GB|AAP37804.1|30725564|BT008445 At2g15890 {Arabidopsis
thaliana;} , partial (64%)
Length = 1381
Score = 31.2 bits (69), Expect = 0.38
Identities = 14/54 (25%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
Frame = -3
Query: 97 LVIASYVLGEIPSIKDRITILRQLWDQTQDVLVLVEP--GTPHGSSIIAQMRSY 148
+V +++L +PS+ +I + Q+WD +L+++ P + H S + A ++S+
Sbjct: 899 MVNQAFLLAPLPSVHQQILAIHQVWDTVSHLLLILHPCSDSCHPS*VCA*LKSH 738
>BM143435
Length = 429
Score = 28.1 bits (61), Expect = 3.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 147 SYILWMEERKHRKSSKKNNEVCKDLIT 173
+Y W+ E++ R + ++ NE+C++L T
Sbjct: 281 AYRAWLREKRERSTPEELNELCRELQT 361
>TC217308 similar to UP|Q944G8 (Q944G8) AT4g30240/F9N11_90, partial (47%)
Length = 1465
Score = 28.1 bits (61), Expect = 3.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 147 SYILWMEERKHRKSSKKNNEVCKDLIT 173
+Y W+ E++ R + ++ NE+C++L T
Sbjct: 289 AYRAWLREKRERSTPEELNELCRELQT 369
>TC229610 weakly similar to UP|O22512 (O22512) Grr1, partial (52%)
Length = 1428
Score = 27.7 bits (60), Expect = 4.2
Identities = 15/43 (34%), Positives = 19/43 (43%)
Frame = +2
Query: 166 EVCKDLITEKAGAFVVAPCPHDGTCPLVKSGKYCHFVQRLERT 208
EVC E + V+ CP G+ L GK C +Q L T
Sbjct: 974 EVCMLSPCESLRSLVIQKCPGFGSASLAMIGKLCPRLQHLNLT 1102
>TC203798 homologue to UP|Q6SPR3 (Q6SPR3) Ribosomal protein S6, complete
Length = 1012
Score = 27.3 bits (59), Expect = 5.5
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 37 ALQEVWPKSLEKVNIIEPSQSMQRAGQRLIQGLKDLPLIHSYDSIQALSKDISKSE 92
A+Q V EKV PS ++ ++ Q KD HS+D+ + SKD + E
Sbjct: 492 AVQPVQGGRCEKVC*HIPSNLYNKSWEKSEQSSKDSTTSHSFDTPKETSKDCRQEE 659
>BQ630604 similar to GP|8656003|gb|A Contains similarity to formin binding
protein 11 from Mus musculus gb|AF135439 and contains,
partial (3%)
Length = 439
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 8 MLVEVSRRIDGLSPTKVLDFGAGTVSAFWALQEVWPKSLEKVNIIEPSQSMQR 60
ML+ ++ + G S +L G ++ W++Q W K LE ++ I+ S ++R
Sbjct: 113 MLLTINPYLIGKST--LLLMGEDIITTIWSMQSSWEKPLELMSPIQISWQVRR 265
>TC208175 similar to GB|AAS92332.1|46402460|BT012416 At3g08630 {Arabidopsis
thaliana;} , partial (29%)
Length = 633
Score = 26.9 bits (58), Expect = 7.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 37 ALQEVWPKSLEKVNIIEPSQSMQRAGQRLIQGLK 70
++Q + PK ++ PS+S+Q RL+ GLK
Sbjct: 146 SIQSLVPKIAANPHVSSPSESIQNGWWRLVGGLK 45
>TC219555 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
partial (16%)
Length = 647
Score = 26.6 bits (57), Expect = 9.4
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -1
Query: 154 ERKHRKSSKKNNEVCKDLITEKAGAFVVAPCP 185
E+ R++ ++ +CK L EK G + A CP
Sbjct: 101 EKIKRRNRERRTRLCKTLPFEKLGFWKTAECP 6
>AW348290
Length = 649
Score = 26.6 bits (57), Expect = 9.4
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -1
Query: 120 LWDQTQDVLVLVEPGTPHGSSIIAQMRSYILWMEERKHRK 159
LW +++P PHG + ++ + Y++W + + RK
Sbjct: 310 LWAFVGCCQAIIDPAQPHGENRLSFL*GYLIWNKLSQLRK 191
>TC216654
Length = 1170
Score = 26.6 bits (57), Expect = 9.4
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +1
Query: 91 SERGHDLVIASYVLGEIPSIKDRITILRQLWDQTQDVLVLVEPGTPHGSSIIAQMRSYIL 150
SE GH +I V+ + SIK + ++ L + +D+ SS+ + +
Sbjct: 403 SEAGHKGIIKELVMDSVDSIKSKGDVITVLKVEKEDL----------ESSLYKEKLQTLQ 552
Query: 151 WMEERKHRKSSKKNNEVCKDL 171
+E K+ +N+++CK+L
Sbjct: 553 LKQELSETKT--RNSDLCKEL 609
>TC207001 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(54%)
Length = 1074
Score = 26.6 bits (57), Expect = 9.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 34 AFWALQEVWPKSLEKVNIIEPSQSMQRAGQR 64
AFW L+ WP++ + P +S R G++
Sbjct: 686 AFWKLRPRWPENAHTSDTWSPPKSADRRGKK 594
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,516,678
Number of Sequences: 63676
Number of extensions: 117637
Number of successful extensions: 569
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of query: 218
length of database: 12,639,632
effective HSP length: 93
effective length of query: 125
effective length of database: 6,717,764
effective search space: 839720500
effective search space used: 839720500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149197.7