BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.11 - phase: 0
(190 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 35 0.021
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 34 0.047
TC218534 similar to UP|Q7QA26 (Q7QA26) AgCP14002 (Fragment), par... 33 0.079
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 32 0.14
AI735951 31 0.30
TC226737 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich prot... 31 0.30
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 30 0.52
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 30 0.67
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 30 0.67
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 30 0.67
TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protei... 30 0.88
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 29 1.1
TC224760 similar to UP|O04692 (O04692) DNA-binding protein, part... 29 1.5
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 29 1.5
TC224567 similar to PIR|T51159|T51159 HMG protein [imported] - A... 29 1.5
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 29 1.5
TC232389 29 1.5
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 29 1.5
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 29 1.5
TC217535 28 2.0
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 35.0 bits (79), Expect = 0.021
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 84 DDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIADLG 128
D+D E D R E D + D D ED++EE + EE+ E ADLG
Sbjct: 286 DEDEEEESDVQRGGEPDDDDNDDDDEDEDEE--DEEEQGEEADLG 414
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 33.9 bits (76), Expect = 0.047
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +3
Query: 72 IDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIADLGGG 130
I +++ L++ +DD E D E D E D D EDD EE K ++++ A LG G
Sbjct: 183 IQGDEFGDLEDDEDDEDIEEDDDEEEEED--EDDDDDEDDEEESKTKKKKSGRAQLGDG 353
>TC218534 similar to UP|Q7QA26 (Q7QA26) AgCP14002 (Fragment), partial (63%)
Length = 1312
Score = 33.1 bits (74), Expect = 0.079
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 70 LEIDYEDWLKLQEADDDAPREVDAIRRYES----DGLETDGDGEDDNEEVKETEEETEI 124
LE +Y L+ +D+ +EVDA + S G+E D DG DD+E E E E+
Sbjct: 885 LEKNYRTVRALELGQEDSLKEVDAKMDFSSFGDDRGMEMDDDGADDDEMEVEDGEADEV 1061
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 32.3 bits (72), Expect = 0.14
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 82 EADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEET 122
E+DDD + D + D E DGD +DD+EE ++ +EET
Sbjct: 419 ESDDDDEDDDDD----DDDNDEDDGDEDDDDEEDEDEDEET 529
Score = 26.6 bits (57), Expect = 7.4
Identities = 15/46 (32%), Positives = 23/46 (49%)
Frame = +2
Query: 81 QEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
+EAD D E + + D E D D +DDN+E E++ + D
Sbjct: 374 EEADSDDDPEANGGGESDDDD-EDDDDDDDDNDEDDGDEDDDDEED 508
>AI735951
Length = 436
Score = 31.2 bits (69), Expect = 0.30
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 100 DGLETDGDGEDDNEEVKETEEETEIADLG 128
+G ++G GEDD E V+E E+ E+ D+G
Sbjct: 421 EGEASEGAGEDDEERVEEFEDFGEVEDVG 335
>TC226737 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein, partial
(37%)
Length = 595
Score = 31.2 bits (69), Expect = 0.30
Identities = 23/72 (31%), Positives = 34/72 (46%)
Frame = -3
Query: 52 GITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDD 111
G+ L+E++ + EDLE +E + D RE R E E + +GE++
Sbjct: 263 GLRLRELREEEEEEGEEDLE---------REGERDRERE----REREE---ERESEGEEE 132
Query: 112 NEEVKETEEETE 123
EE ETE E E
Sbjct: 131 REEEPETEPEGE 96
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 30.4 bits (67), Expect = 0.52
Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Frame = +2
Query: 82 EADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEET-EIADLG 128
+ DD+ +V + D ++D D +DD +E +E EEE E DLG
Sbjct: 431 DEDDEEEGDVQRGGEPDDDDNDSDDDSDDDEDEDEEDEEEQGEEEDLG 574
Score = 28.1 bits (61), Expect = 2.6
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 12/86 (13%)
Frame = +2
Query: 50 LDGITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAP------------REVDAIRRY 97
+D + D ++ + + +D E D D + +DDAP E D R
Sbjct: 308 VDEVVDDAEDDEDEEEDDDDDEGDDND-----DEEDDAPDGGDDDDDEDDEEEGDVQRGG 472
Query: 98 ESDGLETDGDGEDDNEEVKETEEETE 123
E D + D D +DD+++ ++ +EE E
Sbjct: 473 EPD--DDDNDSDDDSDDDEDEDEEDE 544
Score = 26.9 bits (58), Expect = 5.7
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 33 ILIFVSSLIPLTREPWPLDGITFDTLKEQQAKRNPEDL-EIDYEDWLKLQEADDDAPREV 91
+L F+ S + T+E L EQ + + L E D E++ + E DDA +
Sbjct: 197 VLWFLDSKMKATKE-----------LSEQVEENEVKVLVEEDDEEYESVDEVVDDAEDDE 343
Query: 92 DAIRRYESDGLETDGDGEDDNEE 114
D E D + +GD DD E+
Sbjct: 344 DE----EEDDDDDEGDDNDDEED 400
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 30.0 bits (66), Expect = 0.67
Identities = 23/86 (26%), Positives = 38/86 (43%)
Frame = +1
Query: 52 GITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDD 111
G F+ L++ + + ED + D ED + D+D E D + + G GDG D
Sbjct: 982 GDEFEDLEDDEDEEEDEDEDEDEED-----DEDEDDEEEDDTKTKKKKSGKAQAGDG--D 1140
Query: 112 NEEVKETEEETEIADLGGGWGRIVFM 137
E E +++ + G G VF+
Sbjct: 1141 GERPPECKQQ*LVCFFGVSCG*WVFL 1218
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 30.0 bits (66), Expect = 0.67
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 82 EADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEET 122
E DD + D ++ E D DGED+ E+ +E EEET
Sbjct: 496 EGSDDGDEDDDGD---DNGDEEDDDDGEDEEEDEEEDEEET 609
Score = 28.1 bits (61), Expect = 2.6
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 5/69 (7%)
Frame = +1
Query: 60 EQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETD-----GDGEDDNEE 114
++ + P++ E ++ +E D+ E +A DG E D GD EDD++
Sbjct: 388 DEDDEDGPDEDEDGDDEEFSGEEGDEGGDPEDEANGEGSDDGDEDDDGDDNGDEEDDDDG 567
Query: 115 VKETEEETE 123
E E+E E
Sbjct: 568 EDEEEDEEE 594
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 30.0 bits (66), Expect = 0.67
Identities = 22/70 (31%), Positives = 38/70 (53%)
Frame = +2
Query: 58 LKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKE 117
LK+QQ K PE+ +YE+ ++ + +++ EV+ E + + E+D EE +E
Sbjct: 83 LKQQQPK--PENPPQEYEE-VEEEVEEEEVEEEVE----------EEEEEEEEDEEEEEE 223
Query: 118 TEEETEIADL 127
EEE E D+
Sbjct: 224 EEEEEEENDV 253
>TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1,
partial (18%)
Length = 451
Score = 29.6 bits (65), Expect = 0.88
Identities = 15/69 (21%), Positives = 36/69 (51%)
Frame = +2
Query: 58 LKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKE 117
LK+ Q K PE+ +YE+ ++ + +++ EV+ E D + + + ED ++ +
Sbjct: 146 LKQHQPK--PENAAQEYEEEVEEEVEEEEVEEEVEEEEEEEEDEEDEEEEEEDQKDQYQH 319
Query: 118 TEEETEIAD 126
+++ + D
Sbjct: 320 QQQQQDEDD 346
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/68 (26%), Positives = 32/68 (46%)
Frame = +1
Query: 56 DTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEV 115
D +Q + ED + E+ EAD + E + +SDG + D G+DD+++
Sbjct: 418 DDADDQDDEEGDEDFSGEGEE-----EADPEDDPEANGAGGSDSDGDDDDDGGDDDDDDN 582
Query: 116 KETEEETE 123
+ + E E
Sbjct: 583 GDDDGEDE 606
>TC224760 similar to UP|O04692 (O04692) DNA-binding protein, partial (73%)
Length = 654
Score = 28.9 bits (63), Expect = 1.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +3
Query: 73 DYEDWLKLQE------ADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
+YE +K E ADDD E D + +D E D GE+D++E ++ EEE + D
Sbjct: 282 EYEKLIKAYEKKQASSADDD---ESDKSKSEVND--EDDASGEEDHQEDEDDEEEEDDED 446
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 28.9 bits (63), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 64 KRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETE 123
K N ED + D ++ DDD + + +SD + D EDD+E ET + +
Sbjct: 166 KDNEEDSDDDSDE-------DDDFGSSDEEMEDADSDSDDESDDKEDDDE---ETHPKNK 315
Query: 124 IADLG 128
ADLG
Sbjct: 316 KADLG 330
>TC224567 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 876
Score = 28.9 bits (63), Expect = 1.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +2
Query: 73 DYEDWLKLQE------ADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
+YE +K E ADDD E D + +D E D GE+D++E ++ EEE + D
Sbjct: 464 EYEKLIKAYEKKQASSADDD---ESDKSKSEVND--EDDASGEEDHQEDEDDEEEEDDED 628
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein
(Fragment), partial (8%)
Length = 1320
Score = 28.9 bits (63), Expect = 1.5
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 66 NPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIA 125
N D ID+E K+ + +D+ +V E D +E+ +EETE+
Sbjct: 843 NTWDPSIDFEQ--KMNQTEDEGNEDVGLPPELERMVAHED-------QEMGPHQEETELV 995
Query: 126 DLGGGWGR 133
DLG G G+
Sbjct: 996 DLGSGSGK 1019
>TC232389
Length = 629
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Frame = +3
Query: 62 QAKRNPEDLEIDYEDWLKLQEADDDAPRE---VDAIRRYESDGLETDGDGEDDNEEVKET 118
Q R ED++ DY + +DD E +D I D + + +DD EE ++
Sbjct: 18 QEHRLQEDMQSDYSLPSDSESSDDSIMGESFEMDHIGNQNEDIISESLNSDDDYEEDEDE 197
Query: 119 EEETEIADL 127
EEE + ++
Sbjct: 198 EEEDTLIEI 224
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 68 EDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEE 120
ED + D +D E DDD E +A + DG E +++NEE +E EE
Sbjct: 448 EDEDEDGDDQDDDDEDDDDDDEEDEAGEEEDEDGAE-----DEENEEDEEDEE 305
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 100 DGLETDGDGEDDNE-EVKETEEETEIADLGGGWG 132
DG + +GD +DD + E EEE D GGG+G
Sbjct: 622 DGNDDEGDDDDDGDGGFGEGEEELSSED-GGGYG 524
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 28.9 bits (63), Expect = 1.5
Identities = 22/56 (39%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = -1
Query: 68 EDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDD--NEEVKETEEE 121
ED + D +D ++ DDD E D G E D DG +D NEE +E EEE
Sbjct: 415 EDEDEDGDDQDDDEDDDDDDDDEED------EGGEEEDEDGAEDEENEEDEEDEEE 266
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 100 DGLETDGDGEDDNE-EVKETEEETEIADLGGGWG 132
DG + +GD +DD + E EEE D GGG+G
Sbjct: 589 DGNDDEGDDDDDGDGGFGEGEEELSSED-GGGYG 491
>TC217535
Length = 522
Score = 28.5 bits (62), Expect = 2.0
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Frame = -3
Query: 67 PEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
P L D+E K A + A V + G + DGD E+ E +E E +
Sbjct: 373 PFGLGEDHESRYKNGVAPEYAVENVRCVFEGTDGGEDIDGDAENGGERGEEAEASARYQE 194
Query: 127 -----------LGGGWGRIVF 136
GGG GR++F
Sbjct: 193 RVCSVSYSGRRRGGGGGRVLF 131
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,854,839
Number of Sequences: 63676
Number of extensions: 94025
Number of successful extensions: 842
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of query: 190
length of database: 12,639,632
effective HSP length: 92
effective length of query: 98
effective length of database: 6,781,440
effective search space: 664581120
effective search space used: 664581120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149197.11