BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149134.1 - phase: 0
(555 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 135 5e-65
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 148 7e-36
CO982349 123 2e-28
TC234877 117 1e-26
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 67 3e-20
TC213164 83 4e-16
BI972659 80 2e-15
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 70 3e-12
BI321779 63 3e-10
TC234374 43 3e-10
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 62 7e-10
AW757033 62 7e-10
AI496436 58 4e-09
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 59 4e-09
BM891241 41 4e-08
BM891637 56 5e-08
CF922212 49 4e-06
AW101881 44 4e-05
BM309783 35 9e-04
BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis ... 41 0.002
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 135 bits (340), Expect(3) = 5e-65
Identities = 63/97 (64%), Positives = 77/97 (78%)
Frame = -3
Query: 161 IRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIK 220
I+DC +TSE IN+LD K FGGNLALKID+ KAFDTL+ DFL+ VL FG++ FCNWI+
Sbjct: 834 IKDCTCVTSEVINMLDKKVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIR 655
Query: 221 TILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLF 257
IL S+K+ IS+NG GFF+C RGVRQGDPLSP L+
Sbjct: 654 VILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
Score = 127 bits (319), Expect(3) = 5e-65
Identities = 60/134 (44%), Positives = 84/134 (61%)
Frame = -2
Query: 291 HCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNI 350
H + DD+M+FCK ++ L + F Y D GQ+++ KS IF G I R+ I ++
Sbjct: 448 HVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSIPGQRLRVISDL 269
Query: 351 LGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQ 410
L + +PF Y G PIFKGKP H +ADK+K KLA WK S+LSI GRIQLV SV+
Sbjct: 268 LQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSVIH 89
Query: 411 SMLVHTMSIYSWPI 424
ML+++ S+Y+W +
Sbjct: 88 GMLLYSFSVYAWQV 47
Score = 25.0 bits (53), Expect(3) = 5e-65
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 251 PLSPLLFCIVEEVLSRSISILADKG 275
P PL CI ++VLSR +S+L +G
Sbjct: 563 PYPPL--CIAKDVLSRELSMLISEG 495
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 148 bits (373), Expect = 7e-36
Identities = 83/282 (29%), Positives = 143/282 (50%)
Frame = +1
Query: 184 LALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCN 243
L K+D KA+D+++W+FL+ ++ F+ + WI+ + S+ + + +NG+ F
Sbjct: 64 LVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEECVKSASISVLVNGSPTAEFLPQ 243
Query: 244 RGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCK 303
RG+RQGDPL+P LF IV E L+ + ++ L N Y DD + F +
Sbjct: 244 RGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLVGANGVPISILQYADDTIFFGE 423
Query: 304 AKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYL 363
A ++ +K + + S +N KS G+TD N L ++ + PF YL
Sbjct: 424 AAKENVEAIKVILRSFELVSNLRINFAKSCFGVFGVTDQWKQEAANYLHCSLLAFPFIYL 603
Query: 364 GAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWP 423
G PI + + I K + KL+KWK +S GR+ L+KSV+ S+ ++ S + P
Sbjct: 604 GIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGRVTLIKSVLTSIPIYFFSFFRVP 783
Query: 424 IKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGL 465
++ ++ K + F+W G ++K+ + W K+C E GG+
Sbjct: 784 QSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPKERGGI 909
>CO982349
Length = 795
Score = 123 bits (308), Expect = 2e-28
Identities = 72/242 (29%), Positives = 127/242 (51%), Gaps = 1/242 (0%)
Frame = +3
Query: 217 NWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGL 276
+WI+ LHS+ + I +N + F+ RG+RQGDPL+PLLF IV E L+ + D+
Sbjct: 66 HWIRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKR 245
Query: 277 IDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFA 336
+ +N Y DD + F +A M ++ V+K++ + SG +N +S A
Sbjct: 246 FNSFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGA 425
Query: 337 GGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHF-QPIADKVKAKLAKWKASL 395
D L ++ S+PF+YLG PI + P+ PI K + KLA+WK
Sbjct: 426 IWKPDHWCKEAAEFLNCSMLSMPFSYLGIPI-EANPRCREI*DPIIRKCETKLARWKQRH 602
Query: 396 LSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRK 455
+S+ GR+ L+ +++ ++ ++ S + P K+++++ + F+W G +R++ V W
Sbjct: 603 ISLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWET 782
Query: 456 IC 457
+C
Sbjct: 783 VC 788
>TC234877
Length = 534
Score = 117 bits (294), Expect = 1e-26
Identities = 53/109 (48%), Positives = 74/109 (67%)
Frame = +1
Query: 349 NILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSV 408
NILGF+VGSLPF YL P+F+ KP+ +H +PIAD++KA+L WK +LLS G +QL+ S+
Sbjct: 10 NILGFSVGSLPFIYLSVPLFQEKPRPVHLRPIADRIKAELQSWKGNLLSFMGCVQLIISI 189
Query: 409 VQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKIC 457
+ ML+ + +YSWP +L EM+ W +NFIW+ K K W K C
Sbjct: 190 IDGMLL*SFHLYSWPKALLIEMQTWTRNFIWTRGYFKEK-TGYCWLKNC 333
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 441 GDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIR 497
GD+ KRK+VTV + + G + +L +NEA +LK+ W + S + WA +
Sbjct: 287 GDILKRKLVTVG*KTVFLLG*RGH*SLSALSRINEAASLKLAWQFVYSSDTWATFFK 457
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 67.0 bits (162), Expect(2) = 3e-20
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Frame = -3
Query: 223 LHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAA 282
+ ++ M + NG F+ N GVRQ DP++P LF + E LS I+++ +K L I
Sbjct: 665 MSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKKL*RSIQV 486
Query: 283 SRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNI--RKSFIF----A 336
+R L H +VDDL++F +A M + V+ ++D SG +N+ KSF+F
Sbjct: 485 NRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSFLFPKMLI 306
Query: 337 GGITDT 342
GG+ T
Sbjct: 305 GGLRKT 288
Score = 50.1 bits (118), Expect(2) = 3e-20
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = -2
Query: 362 YLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTM 417
YLG PIF P F I DKV + ++WK++LLS+ GR+ L K VV ++ H M
Sbjct: 243 YLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSNLLSMVGRLTLTK*VV*ALPSHIM 76
>TC213164
Length = 446
Score = 82.8 bits (203), Expect = 4e-16
Identities = 41/126 (32%), Positives = 76/126 (59%)
Frame = +3
Query: 45 KEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSI 104
K+EV+ ++D + +PGPD F + +W+I+K D+ + +F+ NG NA +
Sbjct: 36 KKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKRSNAFFL 215
Query: 105 ILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDC 164
LIPK + S+++Y+ I+L+ +KI+ K+L+ R K+LP+II + Q F++GR+
Sbjct: 216 ALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEGRHTLHN 395
Query: 165 IALTSE 170
+ + +E
Sbjct: 396 VVIANE 413
>BI972659
Length = 453
Score = 80.1 bits (196), Expect = 2e-15
Identities = 42/140 (30%), Positives = 75/140 (53%)
Frame = +1
Query: 303 KAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTY 362
+A ++IVLKS+ + SG +N KS G ++ +L +PF Y
Sbjct: 7 EASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQLDIPFHY 186
Query: 363 LGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSW 422
LG PI + ++P+ +K KAKL+KW LS+ GR+ L+KSV+ ++ ++ +S +
Sbjct: 187 LGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKI 366
Query: 423 PIKILKEMEKWIKNFIWSGD 442
P +I+ ++ + F+W G+
Sbjct: 367 PQRIVDKLVSLQRTFMWGGN 426
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 69.7 bits (169), Expect = 3e-12
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Frame = +2
Query: 418 SIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEAT 477
S +S P KI+ ++E + F+W G+ RK+ V W+ +C +GGLG+K L N
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 478 NLKICWNLMQ-SDEQWANIIRSRVIRDHRCMNHHIS----SSIWSGVKAEFHV-----IK 527
K W+L E WA +++S+ R + S S+ W + + +K
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSK-YGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLK 361
Query: 528 DNCSWIVGDGKQINFWSDSW 547
W VG G +I FW D W
Sbjct: 362 RETIWKVGGGDRIKFWEDLW 421
>BI321779
Length = 421
Score = 63.2 bits (152), Expect = 3e-10
Identities = 31/89 (34%), Positives = 48/89 (53%)
Frame = +2
Query: 46 EEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSII 105
EE+K + D S +PGPD + +I+W ++K++V +F K +LP N + I
Sbjct: 104 EEIKKVI*DCESSKSPGPDGYSLLLIKIFWEVIKEEVINFFKEFHKFDFLPRGTNRSFIA 283
Query: 106 LIPKTPNADSVDQYRTIALVNFKFKIINK 134
LI K N + QY I+LV +KI+ K
Sbjct: 284 LIAKCDNPLDIGQYCPISLVGCLYKIV*K 370
>TC234374
Length = 787
Score = 43.1 bits (100), Expect(2) = 3e-10
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 70 FFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSV 116
FFQ Y + V VY+ VL FK+ W+ N N+N+ +L P +ADS+
Sbjct: 646 FFQHY*DAVGDTVYQLVLQLFKSRWILPNLNSNTAVLFPINLDADSI 786
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +2
Query: 23 VEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPD 64
+ IP LV + L+ +P EEVK+ VFD+N + PG D
Sbjct: 506 IYRTIPSLVSGEDDAFLSNIPLNEEVKSLVFDMNGEGVPGTD 631
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 62.0 bits (149), Expect = 7e-10
Identities = 29/88 (32%), Positives = 50/88 (55%)
Frame = -2
Query: 48 VKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILI 107
+K+AV+ S +PGPD F + +W +K D+ + +F NG P NA+ I LI
Sbjct: 375 IKSAVWQCGSVKSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALI 196
Query: 108 PKTPNADSVDQYRTIALVNFKFKIINKV 135
PK + +++ +R I+L+ +KI+ K+
Sbjct: 195 PKVKHPQALNDFRPISLIGCVYKIVAKI 112
>AW757033
Length = 441
Score = 62.0 bits (149), Expect = 7e-10
Identities = 41/128 (32%), Positives = 63/128 (49%)
Frame = -2
Query: 240 FNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLM 299
F+ +RG+RQGDPL+PLLF I E L+ + + A + Y DD +
Sbjct: 431 FSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTI 252
Query: 300 VFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLP 359
F +A M ++ V+K++ + SG +N KS A + D + ++ SLP
Sbjct: 251 FFGEATMENVRVIKTILRGFELASGLKINFAKSRFGAISVPD*WRKEAAEFMNCSLLSLP 72
Query: 360 FTYLGAPI 367
F+YLG PI
Sbjct: 71 FSYLGIPI 48
>AI496436
Length = 414
Score = 58.2 bits (139), Expect(2) = 4e-09
Identities = 32/109 (29%), Positives = 55/109 (50%)
Frame = +1
Query: 323 SGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIAD 382
SG +N KS +D + L +V S+PF YLG PI ++P+
Sbjct: 28 SGLKINFAKSQFGTICKSDIWRKEAADYLNSSVLSMPFVYLGIPIGANSRHSDVWEPVVR 207
Query: 383 KVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEME 431
K + KLA WK +S GR+ L+ SV+ ++ ++ +S + P K++ + +
Sbjct: 208 KCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKVVDKAD 354
Score = 21.2 bits (43), Expect(2) = 4e-09
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 435 KNFIWSGDVTKRKMVTVAW 453
+ F+W GD+ RK +AW
Sbjct: 365 RRFLWGGDLE*RK---IAW 412
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 398 IAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKIC 457
+ GR+ L+KSV+ ++ + +S + P +I+ ++ + F+W G ++ V W IC
Sbjct: 2 MGGRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADIC 181
Query: 458 ADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQ-WANI 495
+GGLG+K L N A + W L + Q WA +
Sbjct: 182 NPKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>BM891241
Length = 407
Score = 40.8 bits (94), Expect(2) = 4e-08
Identities = 22/60 (36%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Frame = -2
Query: 441 GDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQ-WANIIRSR 499
GD +K+ V W +C +GGLG+K + N A K W L +Q WA II S+
Sbjct: 403 GDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINSK 224
Score = 35.0 bits (79), Expect(2) = 4e-08
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 516 WSGVKAEFH-----VIKDNCSWIVGDGKQINFWSDSWCGQ 550
W ++ +H + SW VG G +INFW+D W G+
Sbjct: 165 WRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWLGE 46
>BM891637
Length = 427
Score = 55.8 bits (133), Expect = 5e-08
Identities = 34/111 (30%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Frame = -1
Query: 446 RKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIRSRVIRDHR 505
+K+ ++WR+ CA + GGLG+K + LN A +K W + Q N I + R
Sbjct: 418 KKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKGWR 239
Query: 506 CMNHHISSSIWSGVKAEFHVIKDNCS---------WIVGDGKQINFWSDSW 547
++ +S A+ I + S W VG G QI FW DSW
Sbjct: 238 GLDQGPQKYYFSPWWADLRAINQHQSMIAASNQFCWKVGRGDQILFWEDSW 86
>CF922212
Length = 445
Score = 49.3 bits (116), Expect = 4e-06
Identities = 35/145 (24%), Positives = 58/145 (39%), Gaps = 20/145 (13%)
Frame = -2
Query: 423 PIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKIC 482
P K+L ++ + + F+W G + ++K+ V W +C E+ GLG + L N A K
Sbjct: 438 PNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKRR 259
Query: 483 WNLMQSD------------EQWANIIRSRVIRDHRCMNHHISSSIWSGVKAEFHVIKDNC 530
WNL ++W N+ R ++ S W + H +D
Sbjct: 258 WNLFHHQGELGARVLDSKYKRWRNLDEERRVKS--------ESFWWQEISFITHSTEDG- 106
Query: 531 SWI--------VGDGKQINFWSDSW 547
SW +G ++ FW D W
Sbjct: 105 SWFEKRTKTGRLGCRAKVRFWEDGW 31
>AW101881
Length = 251
Score = 44.3 bits (103), Expect(2) = 4e-05
Identities = 19/36 (52%), Positives = 24/36 (65%)
Frame = -1
Query: 343 RMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQ 378
R+ I N+LG V + PF YLG PIFKG P+ I F+
Sbjct: 176 RIQEISNLLGLKVSNAPFDYLGIPIFKGNPRKISFK 69
Score = 21.2 bits (43), Expect(2) = 4e-05
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 376 HFQPIADKVK 385
H +PIADK+K
Sbjct: 76 HLRPIADKIK 47
>BM309783
Length = 433
Score = 34.7 bits (78), Expect(2) = 9e-04
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 446 RKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSD-EQWANIIR 497
RK V W+ + GG+G+ L +N+A +KI W D WA+++R
Sbjct: 26 RKHHVVGWKAMIMP*HSGGVGMCDLTIMNQACLMKIGWAFRMGDGSLWADVLR 184
Score = 26.2 bits (56), Expect(2) = 9e-04
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 532 WIVGDGKQINFWSDSWCGQV 551
WIV +G+ I W D W +
Sbjct: 297 WIVNNGRSIRAW*DKWVNDI 356
>BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis thaliana},
partial (1%)
Length = 422
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = +3
Query: 447 KMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIRSRVIRDHRC 506
K+ +W+ +C+ + GGLG++ L +N++ +K N+ N + RV+R
Sbjct: 3 KVHWTSWKALCSPKKSGGLGLRLLSHMNKSLLMKST*NMCTKP----NDL*VRVVRSKYK 170
Query: 507 MNHHI---------SSSIWSGVKAEFHVIK-DNCSWIVGDGKQINFWSDSW 547
I ++ W G+ + I DN + +G+G+ ++FW D W
Sbjct: 171 *GKDILP*IDPKKTGTNFWQGIVHCWEKITHDNIARKIGNGRSVHFWKDVW 323
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,980,925
Number of Sequences: 63676
Number of extensions: 447982
Number of successful extensions: 2978
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2971
length of query: 555
length of database: 12,639,632
effective HSP length: 102
effective length of query: 453
effective length of database: 6,144,680
effective search space: 2783540040
effective search space used: 2783540040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149134.1