BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149131.10 - phase: 0 /pseudo
(188 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233295 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%) 55 1e-08
AW756593 47 5e-06
AW203333 47 7e-06
BU091065 44 6e-05
AW596916 42 1e-04
TC224116 42 2e-04
BU965508 41 3e-04
TC222844 weakly similar to UP|Q9FFW4 (Q9FFW4) Similarity to heat... 38 0.003
BM094601 36 0.009
AI443156 32 0.23
TC220267 similar to UP|Q6K235 (Q6K235) F-box-like protein, parti... 30 0.50
TC222059 similar to GB|CAD39676.1|21741394|OSJN00121 OSJNBb0051N... 30 0.50
TC213963 homologue to UP|O82268 (O82268) Expressed protein (At2g... 30 0.86
BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa ... 29 1.5
TC220671 28 1.9
TC205465 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g5... 28 2.5
TC205464 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g5... 28 2.5
CD409444 28 3.3
AW395660 27 4.3
TC210048 27 4.3
>TC233295 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%)
Length = 557
Score = 55.5 bits (132), Expect = 1e-08
Identities = 25/47 (53%), Positives = 32/47 (67%)
Frame = +3
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTD 63
D+I+ LPD +L QILSL+P ++A T ILSKRW LW +DF D
Sbjct: 66 DRISHLPDVLLLQILSLLPTKQAVITGILSKRWRPLWPAVSVLDFDD 206
>AW756593
Length = 370
Score = 47.0 bits (110), Expect = 5e-06
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +3
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFN 76
DKI+ LPD IL ++ + EA T +LSKRW +LWK + F + +S + N
Sbjct: 63 DKISELPDNILLHMMDFMDTREAVQTCVLSKRWNNLWKRLSTLLFN---TSKFESVFKIN 233
Query: 77 DSMSSILLSRYHNIN 91
+ L R +I+
Sbjct: 234 KFLCRFLSDRDDSIS 278
>AW203333
Length = 418
Score = 46.6 bits (109), Expect = 7e-06
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Frame = +1
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDT------- 69
D I++LP IL ILS +P E+A TS+LSK W W + F+D ++ T
Sbjct: 85 DMISTLPKTILHDILSRMPEEDAVRTSVLSKSWAEAWSTYPILYFSDTMIVGTFPRPWED 264
Query: 70 --DSTYSFNDSMSSILLSRYHNIN---KWINFVVQHGLKYLRL 107
+F D + LL R+H K ++ L+Y+ L
Sbjct: 265 FLRKRKNFIDHVKRTLL-RFHTQGLAIKQFRLIINFDLQYMSL 390
>BU091065
Length = 460
Score = 43.5 bits (101), Expect = 6e-05
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Frame = +3
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDF-------------- 61
V++I LP ++ IL +P ++ TS+L++ W ++W T +F
Sbjct: 87 VNRIGDLPMNVIVSILQRLPFQDLVKTSVLARAWRYMWSSTPRREFRDDFFEKCNHLGYL 266
Query: 62 ------TDIILNDTDSTYSFNDSMSSILLSRYHNINKWINFVVQHGLKYLRL 107
T+ +L T + F + +NKWI F+ + G+KY+ L
Sbjct: 267 ETSAIITEALLLHTGPIHVFAVIPPPHYPIKLECLNKWILFLSRKGVKYIGL 422
>AW596916
Length = 455
Score = 42.4 bits (98), Expect = 1e-04
Identities = 19/55 (34%), Positives = 33/55 (59%)
Frame = +3
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTD 70
+D+++ LPD +L I+ + ++ A T +LSKRW LWK T++ L+ +D
Sbjct: 261 MDRLSDLPDFVLLHIMKFMSMKHAVQTCVLSKRWKELWK-----RLTNLALHSSD 410
>TC224116
Length = 520
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 2 RRRRRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDF 61
RR R+ + P D I+ LP I+ IL +P+ +A TSILS +W + W + F
Sbjct: 251 RRSIRMGDVMGP---DLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWASITQLVF 421
Query: 62 TD 63
D
Sbjct: 422 DD 427
>BU965508
Length = 447
Score = 41.2 bits (95), Expect = 3e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 6 RISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTD 63
R+ +A P D I+ LP I+ IL +P+ +A TSILS +W + W + F D
Sbjct: 272 RMDDAMGP---DLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWASITRLVFDD 436
>TC222844 weakly similar to UP|Q9FFW4 (Q9FFW4) Similarity to heat shock
transcription factor HSF30, partial (6%)
Length = 746
Score = 37.7 bits (86), Expect = 0.003
Identities = 24/71 (33%), Positives = 38/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDF-TDIILNDTDSTYSF 75
D+I++LPD +L +++ + + A T +LSKRW L K + F +D+ D SF
Sbjct: 496 DRISALPDSLLFHMINFMDTKSAVQTCVLSKRWNDLSKCLTNLTFNSDLPSEGLDR--SF 669
Query: 76 NDSMSSILLSR 86
S +L SR
Sbjct: 670 KKFESWVLSSR 702
>BM094601
Length = 429
Score = 36.2 bits (82), Expect = 0.009
Identities = 21/64 (32%), Positives = 34/64 (52%)
Frame = +3
Query: 20 NSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFNDSM 79
NSL DE+L +I +P +++ S++ KRW L + + T + L T +S S+
Sbjct: 15 NSLYDELLQEIFQKLPSSSSSSVSLVCKRWLRLHRSST----TSLSLRLTTPHFSLIPSL 182
Query: 80 SSIL 83
SS L
Sbjct: 183SSFL 194
>AI443156
Length = 414
Score = 31.6 bits (70), Expect = 0.23
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +3
Query: 4 RRRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTD 63
RRR A P V + +LP E++++ILS +PV+ S++ R T W + ID
Sbjct: 36 RRRNWMHANPITVSNMANLPVEVVTEILSRLPVK-----SVIRLRSTCKW-WRSIIDSRH 197
Query: 64 IILNDTDSTYSFNDSMSSILL 84
IL + N S +S++L
Sbjct: 198 FIL------FHLNKSHTSLIL 242
>TC220267 similar to UP|Q6K235 (Q6K235) F-box-like protein, partial (7%)
Length = 586
Score = 30.4 bits (67), Expect = 0.50
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 19 INSLPDEILSQILSLIPVEEAAATSILSKRW 49
++ LPD++L +IL+ +P+ +SKRW
Sbjct: 329 LDVLPDDLLERILAYLPIASIFRAGCVSKRW 421
>TC222059 similar to GB|CAD39676.1|21741394|OSJN00121 OSJNBb0051N19.7 {Oryza
sativa (japonica cultivar-group);} , partial (30%)
Length = 510
Score = 30.4 bits (67), Expect = 0.50
Identities = 19/55 (34%), Positives = 27/55 (48%)
Frame = -2
Query: 125 PILPVSILTCRTLVSLDLWRVLIFLLLGLDFHHSMPFIWTIRSSNTFQILCCFWL 179
P L S +C L + L+R + LLG +S+ F+W + F LC FWL
Sbjct: 170 PFLRSSFHSCTHLTYVILYRNFLKKLLG---QYSLLFLWRQILISYFLFLCKFWL 15
>TC213963 homologue to UP|O82268 (O82268) Expressed protein
(At2g31160/T16B12.3), partial (34%)
Length = 502
Score = 29.6 bits (65), Expect = 0.86
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 135 RTLVSLDLWRVLIFLLLGLDFHHSMPFIWTIRSSNTFQILC 175
R L++L L +V + L+ G+ F HSMP T S + F LC
Sbjct: 178 RDLITLFLLQVQVQLIRGIQFSHSMPNSTTFLSHSIF-FLC 59
>BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 394
Score = 28.9 bits (63), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 9 EAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHL 52
E P + + LP E+L++ILS +PV SK W L
Sbjct: 1 EETKPVLLTMSDHLPREVLTEILSRLPVRSLLRFRSTSKSWKSL 132
>TC220671
Length = 815
Score = 28.5 bits (62), Expect = 1.9
Identities = 17/62 (27%), Positives = 28/62 (44%), Gaps = 11/62 (17%)
Frame = +1
Query: 4 RRRISEAATPPAVDKINSLPDEILSQILSLI-----------PVEEAAATSILSKRWTHL 52
R ++ EAA+PP VD I + E++S +S + VE ++ K W L
Sbjct: 334 RVQVPEAASPPLVDLIVAQMKELISSAMSSVWVVDCGDSNSLVVESVVRKEVVGKGWVEL 513
Query: 53 WK 54
+
Sbjct: 514 MR 519
>TC205465 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g57790
{Arabidopsis thaliana;} , partial (15%)
Length = 490
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +3
Query: 20 NSLPDEILSQILSLIPVEEAAATSILSKRW 49
+ LP E+L ILS + +++ S++ KRW
Sbjct: 180 SDLPTELLELILSRLSLDDNVRASVVCKRW 269
>TC205464 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g57790
{Arabidopsis thaliana;} , partial (17%)
Length = 756
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +1
Query: 20 NSLPDEILSQILSLIPVEEAAATSILSKRW 49
+ LP E+L ILS + +++ S++ KRW
Sbjct: 184 SDLPTELLELILSRLSLDDNVRASVVCKRW 273
>CD409444
Length = 653
Score = 27.7 bits (60), Expect = 3.3
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +1
Query: 72 TYSFNDSMSSILLSRYHNINKWINFVVQHGLKYLRLGLHISVEDDD 117
T N S SS +LS + WI ++ HG K LRL L + + D+
Sbjct: 226 TTKHNISSSSKMLSNF-----WIKYIGTHGFKQLRL-LMVGIRKDN 345
>AW395660
Length = 381
Score = 27.3 bits (59), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +3
Query: 22 LPDEILSQILSLIPVEEAAATSILSKRWTHL 52
LPDE++ +ILS +PV+ + K W L
Sbjct: 264 LPDELVVEILSRLPVKSLLQFRCVCKSWMSL 356
>TC210048
Length = 994
Score = 27.3 bits (59), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Frame = -2
Query: 134 CRTLVSLDLWRVLIFLLLGLDFHHSMPFIW-TIRSSNTFQIL 174
CRT + L L R+ FL+ HS+ +W ++ N F IL
Sbjct: 174 CRTSLHLLLCRIQCFLVTATPLSHSIMKLWHSLNPCNQFTIL 49
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,317,166
Number of Sequences: 63676
Number of extensions: 178275
Number of successful extensions: 1538
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of query: 188
length of database: 12,639,632
effective HSP length: 92
effective length of query: 96
effective length of database: 6,781,440
effective search space: 651018240
effective search space used: 651018240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149131.10