BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.9 + phase: 0 /pseudo
(1214 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 160 3e-39
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 102 6e-35
CO982349 121 2e-27
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 67 1e-22
TC212765 73 1e-22
TC213164 86 1e-16
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 84 5e-16
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 72 1e-12
AW757033 68 3e-11
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 66 8e-11
BI972659 65 2e-10
BI315739 56 8e-08
CF922212 54 4e-07
BI321779 54 5e-07
CA851030 53 9e-07
BM891241 52 1e-06
AI496436 50 6e-06
TC223473 49 1e-05
BM891637 49 1e-05
CA851997 48 3e-05
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 160 bits (405), Expect = 3e-39
Identities = 114/367 (31%), Positives = 181/367 (49%), Gaps = 8/367 (2%)
Frame = +1
Query: 429 NSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHC 488
+++I E++ KRS K + FK+D EKA+D+V+W+FL + F +K I C
Sbjct: 7 SALIANEVIDEAKRSN--KSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEEC 180
Query: 489 VSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHI 548
V SA+ S+L NG+ F P GLRQGDPL+P+LF + E L+ ++ AV + ++P +
Sbjct: 181 VKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLV 360
Query: 549 INDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKS-------RAY 601
+G IS L +ADD + F +A ++ I + F S L+IN +KS
Sbjct: 361 GANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVFGVTDQ 540
Query: 602 YSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNR 661
+ N +L A I YLG P+ + ++ I+ K + +L+ WK R
Sbjct: 541 WKQEAANYLHCSLLAFPFI--------YLGIPIGANSRRCHMWDSIIRKCERKLSKWK*R 696
Query: 662 LLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWK 720
++ GR+TL SVL++IP Y+ +PQ++ D + + R FLW G + K I + W+
Sbjct: 697 HISFGGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWE 876
Query: 721 TITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNS 780
+ PK GG+ R + N ++ + T + N A + T L N
Sbjct: 877 KLCLPKERGGI*KRLPNNHNAVANHNSIFCFIDFTGYTF*NQ*A---VNSTGL*AVNSTG 1047
Query: 781 NSSPSWF 787
SPS F
Sbjct: 1048ICSPSLF 1068
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 102 bits (253), Expect(2) = 6e-35
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = -3
Query: 482 VKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQG 541
V+L+ +C+S+ SLLWNG + F P G+RQ DP++PYLF+LC+E+LS I + +
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 542 SWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAY 601
I + G ISHL F DD++LF +A Q+ I + FS +SG K+N+ K++++
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSF 327
Score = 65.5 bits (158), Expect(2) = 6e-35
Identities = 30/69 (43%), Positives = 44/69 (63%)
Frame = -2
Query: 619 GIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLST 678
G+QST LGKYLG P+ P F+FI++K+ R + WK+ LL+ GRLTL V+
Sbjct: 273 GLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSNLLSMVGRLTLTK*VV*A 94
Query: 679 IPTYYMQIN 687
+P++ MQ +
Sbjct: 93 LPSHIMQFD 67
>CO982349
Length = 795
Score = 121 bits (304), Expect = 2e-27
Identities = 75/242 (30%), Positives = 121/242 (49%), Gaps = 1/242 (0%)
Frame = +3
Query: 485 IMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWE 544
I C+ SA+ S+L N + + F P GLRQGDPL+P LF + E L+ +++AV + +
Sbjct: 72 IRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFN 251
Query: 545 PIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSS 604
+ + +S L +ADD + F +A ++ I + F ASGLKIN ++SR + +
Sbjct: 252 SFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESR-FGAI 428
Query: 605 GTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLN 664
P+ + YLG P+ R + I+ K +T+LA WK R ++
Sbjct: 429 WKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHIS 608
Query: 665 RTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNNKGIHLVNWKTIT 723
GR+TL ++L+ +P Y+ P + + R FLW GS + I V W+T+
Sbjct: 609 LGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETVC 788
Query: 724 RP 725
P
Sbjct: 789 LP 794
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 66.6 bits (161), Expect(2) = 1e-22
Identities = 35/131 (26%), Positives = 67/131 (50%)
Frame = -2
Query: 556 SHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLT 615
SH++ ADD+++F K S + + N F + + G I+ KS+ + S P ++ ++
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGS-IPGQRLRVIS 275
Query: 616 AISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSV 675
+ + Y G P+ +G+P R + +K++ +LASWK +L+ GR+ L SV
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 676 LSTIPTYYMQI 686
+ + Y +
Sbjct: 94 IHGMLLYSFSV 62
Score = 59.3 bits (142), Expect(2) = 1e-22
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = -3
Query: 428 DNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMH 487
D + + E+++ + + K G +A K+D+ KAFD ++ DFL S L FG+ I
Sbjct: 828 DCTCVTSEVINMLDK-KVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIRV 652
Query: 488 CVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLF-ILCMEKLSVAI 534
+ SA S+ NG + F G+RQGDPLSP L+ C+E+ ++ +
Sbjct: 651 ILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLYRQRCLEQGTIYV 508
>TC212765
Length = 637
Score = 72.8 bits (177), Expect(2) = 1e-22
Identities = 42/125 (33%), Positives = 61/125 (48%)
Frame = +3
Query: 520 PYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFIT 579
PYLF+LCME+L++ I D Q W PI + +D + +L+ DD+ LF A +
Sbjct: 15 PYLFVLCMERLALCIHDLTSQ*IWRPILVSDDNRLVPYLMLVDDIFLFINAIGD*AYLAS 194
Query: 580 NLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRP 639
F + GLK+N+ KS Y S + ++ I +LGKYL + GR
Sbjct: 195 LTL*NFFQTFGLKLNLDKSSMYCS*RMAPVLRDLISNTLNIVHAPSLGKYLCLKFIHGRS 374
Query: 640 KRSDF 644
K DF
Sbjct: 375 KIVDF 389
Score = 53.1 bits (126), Expect(2) = 1e-22
Identities = 28/72 (38%), Positives = 42/72 (57%), Gaps = 1/72 (1%)
Frame = +2
Query: 655 LASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNNKG 713
LASWK +LLN+ + L VL P Y M+ +WLPQ+I +ID+ +R +W K +
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIWNKVGASLS 595
Query: 714 IHLVNWKTITRP 725
H V+ T ++P
Sbjct: 596 WHSVS*STASKP 631
>TC213164
Length = 446
Score = 85.9 bits (211), Expect = 1e-16
Identities = 46/134 (34%), Positives = 72/134 (53%)
Frame = +3
Query: 304 LTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPA 363
L + KKEV A + K+PGPDG + F K++W I+ D+ + + G F
Sbjct: 18 LVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKR 197
Query: 364 ISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPG 423
+ +ALIPK+ P + +++PISL +YKI+ K+L R + L +I Q+ F+ G
Sbjct: 198 SNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEG 377
Query: 424 RGTADNSIILQEIL 437
R T N +I EI+
Sbjct: 378 RHTLHNVVIANEIM 419
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 83.6 bits (205), Expect = 5e-16
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Frame = +2
Query: 689 LPQNICDSIDQTARNFLWKG-SNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKL 747
LP I ++ R FLW G ++++ I VNWKT+ PK+ GGLGI+ R N LLGK
Sbjct: 17 LP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKW 196
Query: 748 VWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDI-----LKTGYSW 802
WD+ + W +L KY +L E + S S W +I+ + + LK W
Sbjct: 197 RWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKRETIW 376
Query: 803 RAGAGTS-SFWFSNWSS 818
+ G G FW W++
Sbjct: 377 KVGGGDRIKFWEDLWTN 427
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 72.4 bits (176), Expect = 1e-12
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +2
Query: 667 GRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNNKG-IHLVNWKTITRP 725
GR+TL SVLS +P + +PQ I D + R FLW G+ + I V W I P
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 726 KSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNL 762
K GGLGI+ + N L G+ +W + + N+LW L
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>AW757033
Length = 441
Score = 67.8 bits (164), Expect = 3e-11
Identities = 36/94 (38%), Positives = 54/94 (57%)
Frame = -2
Query: 506 FKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVL 565
F P GLRQGDPL+P LF + E L+ +++AV + ++ + +S L +ADD +
Sbjct: 431 FSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTI 252
Query: 566 LFTKAKSSQLQFITNLFDRFSRASGLKINISKSR 599
F +A ++ I + F ASGLKIN +KSR
Sbjct: 251 FFGEATMENVRVIKTILRGFELASGLKINFAKSR 150
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 66.2 bits (160), Expect = 8e-11
Identities = 30/77 (38%), Positives = 42/77 (53%)
Frame = -2
Query: 324 KAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKD 383
K+PGPDG + F K +W + D+ + G F + + IALIPK+ P D
Sbjct: 342 KSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALIPKVKHPQALND 163
Query: 384 FRPISLCNTLYKIITKV 400
FRPISL +YKI+ K+
Sbjct: 162 FRPISLIGCVYKIVAKI 112
>BI972659
Length = 453
Score = 65.1 bits (157), Expect = 2e-10
Identities = 38/135 (28%), Positives = 65/135 (48%)
Frame = +1
Query: 585 FSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDF 644
F SGL+IN +KS+ PN ++ + + YLG P+ R +
Sbjct: 55 FEMVSGLRINYAKSQFGIVGFQPNWA-HDAAQLLNCRQLDIPFHYLGMPIAVKASSRMVW 231
Query: 645 NFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNF 704
++ K + +L+ W + L+ GR+TL SVL+ +P Y + +PQ I D + R F
Sbjct: 232 EPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRIVDKLVSLQRTF 411
Query: 705 LWKGSNNKGIHLVNW 719
+W G N+ + ++W
Sbjct: 412 MWGG--NQHHNRISW 450
>BI315739
Length = 442
Score = 56.2 bits (134), Expect = 8e-08
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Frame = +3
Query: 517 PLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFT-KAKSSQL 575
PLSPYLF +CMEKL++ IQ V + +WEPI I +GP IS + + ++ F K +L
Sbjct: 48 PLSPYLF*ICMEKLAILIQSKVNEETWEPIKISRNGPGISPIYSSQIIVYFL*KPLVLKL 227
Query: 576 QFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPML 635
+ + F + +S+ R + + G + ++ + + G L +L
Sbjct: 228 NW*EMCCNSF-----V*PEVSR-RVFKNPGF*HKRMCLIEKLPG---------SLL**LL 362
Query: 636 QGRPKRSDFNFILEKMQTRLASWKNR 661
GR K+ DF +++ + RL WK++
Sbjct: 363 AGRTKKEDFAHVVDMINNRLDGWKSK 440
>CF922212
Length = 445
Score = 53.9 bits (128), Expect = 4e-07
Identities = 39/136 (28%), Positives = 55/136 (39%), Gaps = 1/136 (0%)
Frame = -2
Query: 689 LPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKL 747
+P + D + + + FLW G K I VNW ++ PK GLG R R N LLGK
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 748 VWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
W++ +L +L KY +L E + S W I S+ +
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNLDEERRVKSESFWWQEI-----------SFITHST 115
Query: 808 TSSFWFSNWSSHGYLG 823
WF + G LG
Sbjct: 114 EDGSWFEKRTKTGRLG 67
>BI321779
Length = 421
Score = 53.5 bits (127), Expect = 5e-07
Identities = 25/76 (32%), Positives = 40/76 (51%)
Frame = +2
Query: 324 KAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKD 383
K+PGPDG+ + K +W ++ ++V + + + + IALI K D+P
Sbjct: 143 KSPGPDGYSLLLIKIFWEVIKEEVINFFKEFHKFDFLPRGTNRSFIALIAKCDNPLDIGQ 322
Query: 384 FRPISLCNTLYKIITK 399
+ PISL LYKI+ K
Sbjct: 323 YCPISLVGCLYKIV*K 370
>CA851030
Length = 358
Score = 52.8 bits (125), Expect = 9e-07
Identities = 26/75 (34%), Positives = 43/75 (56%)
Frame = +1
Query: 199 KELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGIS 258
K +++ + +L QEE W Q+SR W K DKNT FFH +T+ R+ N I K+Q G
Sbjct: 133 KVVEESLDSLLKQEEEYWQQRSRAIWFKERDKNTEFFHRKTLQRKASNSITKIQDDEGNV 312
Query: 259 TSDSNILQEEALKYF 273
+ +++ +K++
Sbjct: 313 CFKPDQIEDILIKFY 357
>BM891241
Length = 407
Score = 52.4 bits (124), Expect = 1e-06
Identities = 22/58 (37%), Positives = 33/58 (55%)
Frame = -2
Query: 710 NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKY 767
++K I V W+ + PK+ GGLGI+ NI LLGK +W + +LW ++ KY
Sbjct: 394 DHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINSKY 221
>AI496436
Length = 414
Score = 50.1 bits (118), Expect = 6e-06
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +1
Query: 585 FSRASGLKINISKSRAYYSSGTP-NGKINNLTAISGIQSTTTLGK--YLGFPMLQGRPKR 641
F +SGLKIN +KS+ GT I A + S+ YLG P+
Sbjct: 16 FELSSGLKINFAKSQF----GTICKSDIWRKEAADYLNSSVLSMPFVYLGIPIGANSRHS 183
Query: 642 SDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSID 698
+ ++ K + +LASWK + ++ GR+TL SVL+ +P Y + +P + D D
Sbjct: 184 DVWEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKVVDKAD 354
>TC223473
Length = 654
Score = 49.3 bits (116), Expect = 1e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +1
Query: 197 LEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNG 256
L+ EL +E ++ LFQEE LW+ K +W+K G+ RR+ N IHK+Q +G
Sbjct: 298 LQAELWEELHNTLFQEEFLWF*KFHCRWMKFGN------------RRQLNFIHKIQNSSG 441
Query: 257 ISTSDSNILQEEALKYFKK 275
+D + + +E + YF K
Sbjct: 442 EWITDIS*IHQEMIVYFFK 498
>BM891637
Length = 427
Score = 49.3 bits (116), Expect = 1e-05
Identities = 32/116 (27%), Positives = 49/116 (41%), Gaps = 7/116 (6%)
Frame = -1
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
K I ++W+ +GGLGI+ + N LL K W M ++LW +L KY
Sbjct: 418 KKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKGWR 239
Query: 772 SLLEANVNSNSSPSWFSIIRAKD------ILKTGYSWRAGAGTS-SFWFSNWSSHG 820
L + SP W++ +RA + + W+ G G FW +W G
Sbjct: 238 GLDQGPQKYYFSP-WWADLRAINQHQSMIAASNQFCWKVGRGDQILFWEDSWVDDG 74
>CA851997
Length = 636
Score = 47.8 bits (112), Expect = 3e-05
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +1
Query: 318 NSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDS 377
NS +P PDGF+ F+ ++W + G+DVF G F ++++T IA+I +I
Sbjct: 286 NSRRPLLQILPDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI** 465
Query: 378 PNTYKDFRPISLCNTLYKI--ITKVLVHRLRPFLN 410
Y+ LCN +KI +++VL RL+ L+
Sbjct: 466 S*RYERS*TNLLCNGGFKILFLSEVLAKRLKNVLD 570
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.143 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,109,196
Number of Sequences: 63676
Number of extensions: 928931
Number of successful extensions: 5309
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 5237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5298
length of query: 1214
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1106
effective length of database: 5,762,624
effective search space: 6373462144
effective search space used: 6373462144
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC149130.9