TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149130.2 + phase: 0 
         (239 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC220885                                                              307  2e-84
BE330619 similar to SP|P50159|TF22 Transcription initiation fact...    28  2.8
TC228591 similar to GB|AAP68282.1|31711852|BT008843 At1g73060 {A...    28  4.8
TC207980 weakly similar to PIR|T52270|T52270 DNA-directed RNA po...    27  8.3
TC231031 homologue to UP|EBN2_EBV (P12978) EBNA-2 nuclear protei...    27  8.3
TC226570 similar to UP|Q93W37 (Q93W37) AT5g01350/T10O8_60, parti...    27  8.3

>TC220885 
          Length = 1050

 Score =  307 bits (787), Expect = 2e-84
 Identities = 144/234 (61%), Positives = 195/234 (82%)
 Frame = +1

Query: 1   MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA 60
           +++DE+P++++NLD KMK+V V + AL +TE+HV+R+IPPY++SATTPQEAY+LDKIIL 
Sbjct: 163 LRQDEDPDSQRNLDVKMKSVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILK 342

Query: 61  EEWNYLQDIYYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKF 120
            EW+YL+DIY +LQ+   ADFS YP+F+RNRI RL+KI+D+SEKK+LSCI S+IN+L+KF
Sbjct: 343 GEWDYLEDIYNNLQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKF 522

Query: 121 KDQHSMDGISSSKFEKLPYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFR 180
           KDQHS D + S+K  K+P  L H+F+ MF V+ES+RLPPEK++LLI YVLVLTLFSD+FR
Sbjct: 523 KDQHSFD-VLSAKGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFR 699

Query: 181 TDYRDIVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLTFSQIKKRKRK 234
           TDY DI KDL M+ L +R ++EHLGCK    + + YATLP+PL F ++++RKRK
Sbjct: 700 TDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFPELRQRKRK 861


>BE330619 similar to SP|P50159|TF22 Transcription initiation factor TFIID-2
           (TATA-box factor 2) (TATA sequence-binding protein 2),
           partial (50%)
          Length = 439

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 25/46 (53%)
 Frame = -2

Query: 183 YRDIVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLTFSQI 228
           Y+ +V  L +S L  R +  H+     S +++    LPIP+T SQ+
Sbjct: 297 YKRLVSQLYLSILRFRILLAHVHVNPPSDERI----LPIPMTLSQV 172


>TC228591 similar to GB|AAP68282.1|31711852|BT008843 At1g73060 {Arabidopsis
           thaliana;} , partial (57%)
          Length = 1559

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 2   KRDEEP---EAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKII 58
           +R+ +P   E    +D +++N++ ++     T A    H+PP + +        +LD+I 
Sbjct: 142 QREMDPATAERLSQIDPEIQNIDTEKAQRQQTLAAFWEHLPPIDPALVAAAMQRILDRIR 321

Query: 59  LAEE 62
             EE
Sbjct: 322 GLEE 333


>TC207980 weakly similar to PIR|T52270|T52270 DNA-directed RNA polymerase
           16.5 K chain [imported] - Arabidopsis thaliana
           {Arabidopsis thaliana;}  , partial (41%)
          Length = 887

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 11/24 (45%), Positives = 14/24 (57%)
 Frame = -1

Query: 23  KETALANTEAHVTRHIPPYNSSAT 46
           K    A+TEAH T HIPP  +  +
Sbjct: 581 KHALSASTEAHQTMHIPPLQAEVS 510


>TC231031 homologue to UP|EBN2_EBV (P12978) EBNA-2 nuclear protein, partial
           (4%)
          Length = 743

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 33  HVTRHIPPYNSSATTP 48
           H T+H PP++ SAT+P
Sbjct: 667 HTTKHSPPHSPSATSP 620


>TC226570 similar to UP|Q93W37 (Q93W37) AT5g01350/T10O8_60, partial (58%)
          Length = 605

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 55  DKIILAEEWNYLQDIY-YSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEK 104
           +KII+A   N++Q +  Y + + V    +  P+F R  +   K+IED S K
Sbjct: 73  EKIIMAGGANFVQRVLSYVVNEVVINGLANSPAFQRFAVRTSKRIEDISNK 225


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,229,365
Number of Sequences: 63676
Number of extensions: 116699
Number of successful extensions: 716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of query: 239
length of database: 12,639,632
effective HSP length: 94
effective length of query: 145
effective length of database: 6,654,088
effective search space: 964842760
effective search space used: 964842760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)