BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149129.11 - phase: 0 /pseudo
(234 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226250 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial... 294 2e-80
TC226252 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial... 267 4e-72
TC229946 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial... 216 7e-57
TC229947 159 1e-39
TC226806 138 2e-33
TC209331 similar to UP|Q7G9D2 (Q7G9D2) F12A21.7, partial (35%) 120 5e-28
TC217383 similar to UP|Q6YYC5 (Q6YYC5) Copine I-like protein, pa... 109 1e-24
TC217384 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein (At1g793... 108 2e-24
TC211405 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial... 99 2e-21
TC226249 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial... 79 2e-15
TC220217 similar to UP|Q9FH53 (Q9FH53) Copine-like protein (At5g... 66 2e-11
BU090291 similar to GP|16797791|gb| bZIP transcription factor {N... 50 1e-06
BQ610349 45 4e-05
TC219883 similar to UP|Q6YYC5 (Q6YYC5) Copine I-like protein, pa... 40 0.001
TC208771 29 1.6
TC230136 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-bindi... 28 2.7
BE474993 28 4.7
BG510825 27 6.1
TC230740 similar to UP|Q9FZA1 (Q9FZA1) F3H9.7 protein, partial (... 27 6.1
TC223756 weakly similar to UP|Q9FJJ3 (Q9FJJ3) Arabidopsis thalia... 27 8.0
>TC226250 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (68%)
Length = 1752
Score = 294 bits (753), Expect = 2e-80
Identities = 158/228 (69%), Positives = 178/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 4 SGKYSLIRQSLHDIRNVPNSCEKAISIIGKKFSPFLDDNLIPCFGFGDASTSDHDVFSFY 63
+GK+S R+SLH I N PN E+AISIIGK + F +DNLIPCFGFGDAST D DVFSFY
Sbjct: 490 TGKHSFNRKSLHHIGNGPNPYEQAISIIGKTLAAFDEDNLIPCFGFGDASTHDQDVFSFY 669
Query: 64 RDERFCNGHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQSGGKHHVLVIISDGQV 123
DERFCNG EE+LS+YREI PNI+ AG TSFAPI+EMA IV+QSGG++HVLVI++DGQV
Sbjct: 670 PDERFCNGFEEVLSQYREIVPNIRLAGPTSFAPIVEMAMTIVEQSGGQYHVLVIVADGQV 849
Query: 124 IRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQDNIKMQTRTFH 183
R D + G LS Q+ TVDAIVEA KFPLSIILVGVGDGPWDM+KEF DNI R F
Sbjct: 850 TRSIDTERGRLSPQEQRTVDAIVEASKFPLSIILVGVGDGPWDMMKEFDDNI--PARAFD 1023
Query: 184 NFKFVNFTEIMSKSNNISPSLKEAEI-LLAIREILFQYKAAKELGLLG 230
NF+FVNFTEIMSK NI PS KEA L A+ EI QYKAA EL LLG
Sbjct: 1024NFQFVNFTEIMSK--NIPPSRKEAAFALAALMEIPSQYKAAIELNLLG 1161
>TC226252 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (68%)
Length = 1376
Score = 267 bits (682), Expect = 4e-72
Identities = 141/228 (61%), Positives = 171/228 (74%), Gaps = 1/228 (0%)
Frame = +1
Query: 4 SGKYSLIRQSLHDIRNVPNSCEKAISIIGKKFSPFLDDNLIPCFGFGDASTSDHDVFSFY 63
+G S R+ LH I + N E+AISIIGK S F +DNLIPCFGFGDAST D +VF FY
Sbjct: 148 TGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFCFY 327
Query: 64 RDERFCNGHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQSGGKHHVLVIISDGQV 123
DERFC+G EE+L RYRE+ P ++ AG TSFAP+IEMA IV+QSGG++HVLVII+DGQV
Sbjct: 328 PDERFCHGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQV 507
Query: 124 IRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQDNIKMQTRTFH 183
R D +HG LS+Q+ TV+AIV+A ++PLSI+LVGVGDGPWDM+K+F DNI R F
Sbjct: 508 TRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIVLVGVGDGPWDMMKKFDDNI--PARAFD 681
Query: 184 NFKFVNFTEIMSKSNNISPSLKEAEI-LLAIREILFQYKAAKELGLLG 230
NF+FVNFTEIMSK N+ S KE E L A+ EI QYKA EL +LG
Sbjct: 682 NFQFVNFTEIMSK--NMDRSRKETEFALAALMEIPSQYKATLELNILG 819
>TC229946 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (48%)
Length = 1058
Score = 216 bits (550), Expect = 7e-57
Identities = 115/179 (64%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Frame = +3
Query: 53 STSDHDVFSFYRDERFCNGHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQSGGKH 112
ST D DVFSF+ DERFCNG EE+LSRYR+I P ++ AG TSFAPIIEMA IV+QSGG++
Sbjct: 3 STHDQDVFSFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQY 182
Query: 113 HVLVIISDGQVIRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQ 172
HVL+II+DGQV R D QHG LS Q+ T+ AIV+A +PLSI+LVGVGDGPWDM++EF
Sbjct: 183 HVLLIIADGQVTRSVDTQHGQLSPQEEKTIGAIVKASGYPLSIVLVGVGDGPWDMMREFD 362
Query: 173 DNIKMQTRTFHNFKFVNFTEIMSKSNNISPSLKEAEILL-AIREILFQYKAAKELGLLG 230
DNI R F NF+FVNFTEIMSK I S KE E L A+ EI QYKA +LG+LG
Sbjct: 363 DNI--PARAFDNFQFVNFTEIMSK--GIDSSRKETEFALSALMEIPSQYKATIDLGILG 527
>TC229947
Length = 694
Score = 159 bits (401), Expect = 1e-39
Identities = 78/115 (67%), Positives = 95/115 (81%)
Frame = +3
Query: 4 SGKYSLIRQSLHDIRNVPNSCEKAISIIGKKFSPFLDDNLIPCFGFGDASTSDHDVFSFY 63
+GK S R+SLHDIR+ N E+AISIIGK S F +DNLIPCFGFGDAST D DVFSF+
Sbjct: 348 TGKRSFNRKSLHDIRSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFF 527
Query: 64 RDERFCNGHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQSGGKHHVLVII 118
+ERFCNG EE+L+RYR+I P+++ AG TSFAPIIEMA IV+QSGG++HVL+II
Sbjct: 528 SEERFCNGFEEVLTRYRQIIPSLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLII 692
>TC226806
Length = 1126
Score = 138 bits (348), Expect = 2e-33
Identities = 72/142 (50%), Positives = 99/142 (69%)
Frame = +2
Query: 85 NIQPAGTTSFAPIIEMATKIVDQSGGKHHVLVIISDGQVIRRNDAQHGSLSSQKLHTVDA 144
N++ AG TSFAP+I+ A IV++S G++HVLVII+DGQV R +D HG S Q+ T+++
Sbjct: 185 NLKLAGPTSFAPVIDAAVGIVERSNGQYHVLVIIADGQVTRNSDTPHGKFSPQEQATINS 364
Query: 145 IVEARKFPLSIILVGVGDGPWDMVKEFQDNIKMQTRTFHNFKFVNFTEIMSKSNNISPSL 204
I+ A +PLSIILVGVGDGPWD ++ F DNI R F NF+FVNFT+I S++ + S
Sbjct: 365 IIAASHYPLSIILVGVGDGPWDEMQHFDDNITQ--RLFDNFQFVNFTKITSENKDASKK- 535
Query: 205 KEAEILLAIREILFQYKAAKEL 226
+ A L A+ EI QY+ + L
Sbjct: 536 EAAFALAALMEIPIQYRITQNL 601
Score = 91.3 bits (225), Expect = 3e-19
Identities = 42/72 (58%), Positives = 54/72 (74%)
Frame = +1
Query: 25 EKAISIIGKKFSPFLDDNLIPCFGFGDASTSDHDVFSFYRDERFCNGHEEILSRYREIRP 84
E+AISIIG+ S F +DNLIPCFGFGDAST D +VFSFY DE +C+G E++L+RYREI P
Sbjct: 4 EQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDECYCHGFEQVLARYREIVP 183
Query: 85 NIQPAGTTSFAP 96
++ + P
Sbjct: 184QLKIGRSNIICP 219
>TC209331 similar to UP|Q7G9D2 (Q7G9D2) F12A21.7, partial (35%)
Length = 460
Score = 120 bits (301), Expect = 5e-28
Identities = 63/109 (57%), Positives = 83/109 (75%), Gaps = 1/109 (0%)
Frame = +2
Query: 123 VIRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQDNIKMQTRTF 182
V R D QHG+LS Q+L+T++AIV+A ++PLSI+LVGVGDGPW+M++EF DNI +R F
Sbjct: 2 VTRSVDTQHGNLSPQELNTINAIVKASEYPLSIVLVGVGDGPWEMMREFDDNI--PSRVF 175
Query: 183 HNFKFVNFTEIMSKSNNISPSLKEAEI-LLAIREILFQYKAAKELGLLG 230
NF+FVNFTEIM + N+ P+ KE + L A+ EI QYKA ELG+LG
Sbjct: 176 DNFQFVNFTEIMRR--NVDPARKETDFSLSALMEIPSQYKATLELGILG 316
>TC217383 similar to UP|Q6YYC5 (Q6YYC5) Copine I-like protein, partial (39%)
Length = 917
Score = 109 bits (272), Expect = 1e-24
Identities = 62/110 (56%), Positives = 77/110 (69%), Gaps = 1/110 (0%)
Frame = +1
Query: 122 QVIRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQDNIKMQTRT 181
QV ++ G LS Q+ T+ AI +A +PLSIILVGVGDGPW+ +K+F D K+ R
Sbjct: 7 QVTTSAASEDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWEDMKKFDD--KIPARD 180
Query: 182 FHNFKFVNFTEIMSKSNNISPSLKEAEI-LLAIREILFQYKAAKELGLLG 230
F NF+FVNFT+IM+K + SPS KEA L A+ EI FQYKAA ELGLLG
Sbjct: 181 FDNFQFVNFTDIMAKKS--SPSEKEAAFALAALMEIPFQYKAATELGLLG 324
>TC217384 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein
(At1g79380/T8K14_20), partial (39%)
Length = 877
Score = 108 bits (270), Expect = 2e-24
Identities = 61/103 (59%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = +1
Query: 129 AQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQDNIKMQTRTFHNFKFV 188
++HG LS Q+ T+ AIV+A +PLSIILVGVGDGPW+ +K+F D K+ R F NF+FV
Sbjct: 16 SEHGELSPQEARTIKAIVDASSYPLSIILVGVGDGPWEDMKKFDD--KIPARDFDNFQFV 189
Query: 189 NFTEIMSKSNNISPSLKE-AEILLAIREILFQYKAAKELGLLG 230
NFT+IM+K + SPS KE A L A+ EI FQYKAA EL LLG
Sbjct: 190 NFTDIMTKKS--SPSEKETAFALAALMEIPFQYKAAIELELLG 312
>TC211405 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (29%)
Length = 770
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/82 (70%), Positives = 61/82 (73%), Gaps = 1/82 (1%)
Frame = +2
Query: 150 KFPLSIILVGVGDGPWDMVKEFQDNIKMQTRTFHNFKFVNFTEIMSKSNNISPSLKEAEI 209
KFPLSIILVGVGDGPWDM+KEF DNI R F NF+FVNFTEIMSKS I PS KEA
Sbjct: 86 KFPLSIILVGVGDGPWDMMKEFDDNI--PARAFDNFQFVNFTEIMSKS--IPPSRKEAAF 253
Query: 210 -LLAIREILFQYKAAKELGLLG 230
L A+ EI YKAA EL LLG
Sbjct: 254 ALAALMEIPSHYKAAIELKLLG 319
>TC226249 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (27%)
Length = 861
Score = 78.6 bits (192), Expect = 2e-15
Identities = 46/70 (65%), Positives = 49/70 (69%), Gaps = 1/70 (1%)
Frame = +2
Query: 162 DGPWDMVKEFQDNIKMQTRTFHNFKFVNFTEIMSKSNNISPSLKEAEI-LLAIREILFQY 220
DGPWDM+KEF DNI R F NF+FVNFTEIMSK NI PS KEA L A+ EI QY
Sbjct: 2 DGPWDMMKEFDDNI--PARVFDNFQFVNFTEIMSK--NIPPSRKEAAFALAALMEIPSQY 169
Query: 221 KAAKELGLLG 230
KA EL LLG
Sbjct: 170 KATIELNLLG 199
>TC220217 similar to UP|Q9FH53 (Q9FH53) Copine-like protein (At5g61900),
partial (42%)
Length = 878
Score = 65.9 bits (159), Expect = 2e-11
Identities = 56/161 (34%), Positives = 76/161 (46%), Gaps = 12/161 (7%)
Frame = +2
Query: 13 SLH--DIRNVPNSCEKAISIIGKKFSPFLDDNLIPCFGFG----DASTSDHDVFSFYRDE 66
SLH D PN+ ++A+ +G+ + D P +GFG DA S F+
Sbjct: 98 SLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSH--CFNLNGSS 271
Query: 67 RFCN--GHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQS----GGKHHVLVIISD 120
C G + I+ Y N+ AG T F P+I A I QS G K+ VL+II+D
Sbjct: 272 HCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITD 451
Query: 121 GQVIRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVG 161
G V D Q T DA+V+A PLSI++VGVG
Sbjct: 452 GVV---TDLQE---------TKDALVKASDLPLSILIVGVG 538
>BU090291 similar to GP|16797791|gb| bZIP transcription factor {Nicotiana
tabacum}, partial (8%)
Length = 413
Score = 49.7 bits (117), Expect = 1e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 152 PLSIILVGVGDGPWDMVKEFQDNI 175
PLSI+LVGVGDGPWDM++EF DNI
Sbjct: 413 PLSIVLVGVGDGPWDMMREFDDNI 342
>BQ610349
Length = 428
Score = 44.7 bits (104), Expect = 4e-05
Identities = 21/40 (52%), Positives = 28/40 (69%)
Frame = +3
Query: 110 GKHHVLVIISDGQVIRRNDAQHGSLSSQKLHTVDAIVEAR 149
G+ HVLVI++DGQV R D G LS Q+ T+ A+V+AR
Sbjct: 9 GQFHVLVIVADGQVTRSVDTSDGELSPQEEKTIKAVVDAR 128
Score = 34.7 bits (78), Expect = 0.038
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 145 IVEARKFPLSIILVGVGDGPW 165
I + +PL+I+LVGVGDGPW
Sbjct: 365 ISDTSAYPLAIVLVGVGDGPW 427
>TC219883 similar to UP|Q6YYC5 (Q6YYC5) Copine I-like protein, partial (19%)
Length = 501
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 4 SGKYSLIRQSLHDIRNVPNSCEKAISIIGKKFSPFLD 40
+G S +SLH I + PN EKAISIIGK +PF D
Sbjct: 391 TGSVSFNNRSLHAIGSTPNPYEKAISIIGKTLAPFDD 501
>TC208771
Length = 593
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = +3
Query: 163 GPWDMVKEFQDNIKMQTRTFHNFKFVNFTEI 193
GPW + KE N T+ FKF+ FT I
Sbjct: 237 GPWSVHKEEYSNTYNNTKQLCKFKFIFFTHI 329
>TC230136 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
cnd41-like protein, partial (47%)
Length = 1077
Score = 28.5 bits (62), Expect = 2.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -3
Query: 99 EMATKIVDQSGG---KHHVLVIISDGQVIRRNDAQHGSLSSQ 137
E++ +Q+GG + V+V SDG V+ R AQ SLS +
Sbjct: 145 ELSAAKAEQTGGADEQSFVVVAASDGDVLHRRGAQRHSLSRE 20
>BE474993
Length = 299
Score = 27.7 bits (60), Expect = 4.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 164 PWDMVKEFQDNIKMQTRTFHNFKFVNFTEIMSKSNNIS 201
PWD VK N+ Q F+NFT S+S+N+S
Sbjct: 198 PWDRVKNG*QNVFFQF--IQARYFINFTSRSSRSSNVS 91
>BG510825
Length = 440
Score = 27.3 bits (59), Expect = 6.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 144 AIVEARKFPLSIILVGVGDGPWDMVKEFQ 172
A+VE RK L ++LVG G WD V+ F+
Sbjct: 328 ALVELRKMRL-LLLVGYGFHGWDRVRRFR 245
>TC230740 similar to UP|Q9FZA1 (Q9FZA1) F3H9.7 protein, partial (28%)
Length = 566
Score = 27.3 bits (59), Expect = 6.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 144 AIVEARKFPLSIILVGVGDGPWDMVKEFQ 172
A+VE RK L ++LVG G WD V+ F+
Sbjct: 343 ALVELRKMRL-LLLVGYGFHGWDRVRRFR 260
>TC223756 weakly similar to UP|Q9FJJ3 (Q9FJJ3) Arabidopsis thaliana genomic
DNA, chromosome 5, TAC clone:K19B1 (AT5g62520/K19B1_13),
partial (19%)
Length = 532
Score = 26.9 bits (58), Expect = 8.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -3
Query: 187 FVNFTEIMSKSNNISPSLKEAEILLAIREILF 218
F+ ++M++S+N+SP++ + + REILF
Sbjct: 197 FLALKDLMTESSNLSPAITLTFCISSCREILF 102
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,444,143
Number of Sequences: 63676
Number of extensions: 116379
Number of successful extensions: 556
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of query: 234
length of database: 12,639,632
effective HSP length: 94
effective length of query: 140
effective length of database: 6,654,088
effective search space: 931572320
effective search space used: 931572320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149129.11