BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149079.11 - phase: 0
(664 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230020 UP|Q945U3 (Q945U3) Acyl-CoA oxidase , complete 1202 0.0
TC207855 UP|Q945U4 (Q945U4) Acyl-CoA oxidase , partial (83%) 1007 0.0
TC209943 homologue to UP|Q945U4 (Q945U4) Acyl-CoA oxidase , par... 230 1e-60
TC228745 similar to UP|O65201 (O65201) Acyl-CoA oxidase , parti... 211 8e-55
TC217641 similar to UP|Q9LKX5 (Q9LKX5) Acyl-CoA oxidase ACX3 (A... 202 5e-52
TC223233 homologue to UP|Q945U4 (Q945U4) Acyl-CoA oxidase , par... 198 7e-51
BF596579 similar to GP|15553480|gb| acyl-CoA oxidase {Glycine ma... 129 3e-30
TC216734 similar to UP|Q96329 (Q96329) G6p (Short-chain acyl CoA... 59 7e-09
BM107749 56 5e-08
BF425554 similar to PIR|T46895|T468 acyl-CoA dehydrogenase (EC 1... 44 2e-04
TC221505 similar to UP|Q9LMI7 (Q9LMI7) T2D23.2 protein, partial ... 33 0.31
TC231450 30 4.5
>TC230020 UP|Q945U3 (Q945U3) Acyl-CoA oxidase , complete
Length = 2275
Score = 1202 bits (3111), Expect = 0.0
Identities = 588/665 (88%), Positives = 630/665 (94%), Gaps = 1/665 (0%)
Frame = +2
Query: 1 MEGE-DHLAFERNKAEFDVDAMKIVWAGSAHALEVSDRMSRLVASDPAFRKDHRPMLGRK 59
MEG DHLAFERN ++FDVD MKIVWAGS HA EVSD+M+RLVASDPAFRKD R +L RK
Sbjct: 119 MEGMVDHLAFERNNSQFDVDEMKIVWAGSRHAFEVSDKMARLVASDPAFRKDDRVVLDRK 298
Query: 60 ELFKSTLKKAAYAWKRIIELRLTEEEASMLRSFVDEPAFTDLHWGMFIPAIKGQGTEEQQ 119
LFK+TL+KAAYAWKRIIELRL+EEEA+MLRSFVD+PAFTDLHWGMF+PAIKGQGTEEQQ
Sbjct: 299 ALFKNTLRKAAYAWKRIIELRLSEEEAAMLRSFVDQPAFTDLHWGMFVPAIKGQGTEEQQ 478
Query: 120 QKWLPLAQRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL 179
+KWLPLA +MQIIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIHSPTLTSSKWWPGGL
Sbjct: 479 KKWLPLAHKMQIIGCYAQTELGHGSNVQGLETTATFDPRTDEFVIHSPTLTSSKWWPGGL 658
Query: 180 GKVSTHAVVYARLITDGRDHGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYNTMDN 239
GKVSTHAVVYARLITDG+DHGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYN+MDN
Sbjct: 659 GKVSTHAVVYARLITDGQDHGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYNSMDN 838
Query: 240 GVLRFEHVRIPRDQMLMRVSQVTREGKYVQSNVPRQLVYGTMVYVRQTIVSDASTAMSRA 299
G+LRF+HVRIPR+QMLMRVSQVTREGKYVQS+VPRQLVYGTMVYVRQTIVSDAS A+SRA
Sbjct: 839 GMLRFDHVRIPRNQMLMRVSQVTREGKYVQSSVPRQLVYGTMVYVRQTIVSDASVALSRA 1018
Query: 300 VCIAARYSAVRRQFGGNNGSLESQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYTDVM 359
VCIA RYSAVRRQFG G LE+QVIDYKTQQARLFPLLASAYAFRFVGEWLKWLY DVM
Sbjct: 1019VCIATRYSAVRRQFGSKEGGLETQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYMDVM 1198
Query: 360 KRLQANDFSTLPEAHACTAGLKSLTTSATSDGIEECRKLCGGHGYLCSSGLPELFAVYVP 419
KRLQA+DFSTLPEAHACTAGLKSLTTSAT+DGIEECRKLCGGHGYLCSSGLPELFAVY+P
Sbjct: 1199KRLQASDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYIP 1378
Query: 420 TCTYEGDNIVLLLQVARHLMKVISRLGSGKKPVGTTAYMGRVEQLLEARSDVQKAEDWLN 479
TCTYEGDN VLLLQVARHL+K IS+LGS KPVGTT+Y+GRVEQL++ RSDVQK EDWL
Sbjct: 1379TCTYEGDNTVLLLQVARHLIKTISQLGSRNKPVGTTSYIGRVEQLMQYRSDVQKVEDWLK 1558
Query: 480 PNTVLRAFEARAARMSVACAKNLTKFSNPEEGFQELLADLVDAARAHCQLIVVSKFIEKL 539
PN VL AFEARAA+ VACA+NL+KF+NPEEGFQEL DLV+AA AHCQLIVVSKFIEKL
Sbjct: 1559PNAVLGAFEARAAKKVVACAQNLSKFTNPEEGFQELSVDLVEAAVAHCQLIVVSKFIEKL 1738
Query: 540 QQDIPGKGVKRQLEILCNIYALFHLHKHLGDFLSTGCITPKQGSLANDQLRSLYSQVRPN 599
QQDIPGKGVK+QLE+LC+IYALF LHKHLGDFL+TGCITPKQGSLAN+ LRSLYSQVRPN
Sbjct: 1739QQDIPGKGVKQQLELLCSIYALFLLHKHLGDFLATGCITPKQGSLANELLRSLYSQVRPN 1918
Query: 600 AIALVDAFNYTDHYLSSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGFQEYIRPMLKQQL 659
AIALVDAFNYTDHYL SVLGRYDG+VYPKLYEEAWKDPLNDSVVPDGFQEYIRPMLKQQL
Sbjct: 1919AIALVDAFNYTDHYLGSVLGRYDGDVYPKLYEEAWKDPLNDSVVPDGFQEYIRPMLKQQL 2098
Query: 660 RNARL 664
RNARL
Sbjct: 2099RNARL 2113
>TC207855 UP|Q945U4 (Q945U4) Acyl-CoA oxidase , partial (83%)
Length = 1793
Score = 1007 bits (2603), Expect = 0.0
Identities = 487/548 (88%), Positives = 519/548 (93%)
Frame = +3
Query: 117 EQQQKWLPLAQRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWP 176
EQQQKWLPLA RMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIH+PTLTSSKWWP
Sbjct: 3 EQQQKWLPLAYRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHNPTLTSSKWWP 182
Query: 177 GGLGKVSTHAVVYARLITDGRDHGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYNT 236
GGLGK+STHAV YARLI G DHGVHGFIVQLRSLDDHLPLPGIT+GDIGMKFGN AYNT
Sbjct: 183 GGLGKISTHAVAYARLIIGGEDHGVHGFIVQLRSLDDHLPLPGITIGDIGMKFGNAAYNT 362
Query: 237 MDNGVLRFEHVRIPRDQMLMRVSQVTREGKYVQSNVPRQLVYGTMVYVRQTIVSDASTAM 296
MDNGVLRF+HVRIPR+QMLMRVSQVTREG+YV SNVPRQLVYGTMV VRQ IV+DAS A+
Sbjct: 363 MDNGVLRFDHVRIPRNQMLMRVSQVTREGRYVSSNVPRQLVYGTMVNVRQKIVADASVAL 542
Query: 297 SRAVCIAARYSAVRRQFGGNNGSLESQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYT 356
SRAVCIA RYSAVRRQFG +NG LE+QVIDYKTQQARLFPLLASAYAFRFVGEWLKWLY
Sbjct: 543 SRAVCIATRYSAVRRQFGSHNGGLETQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYM 722
Query: 357 DVMKRLQANDFSTLPEAHACTAGLKSLTTSATSDGIEECRKLCGGHGYLCSSGLPELFAV 416
DV +RLQANDFSTLPEAHACTAGLKSLTT+AT+DGIEECRKLCGGHGYLCSSGLPELFAV
Sbjct: 723 DVTERLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAV 902
Query: 417 YVPTCTYEGDNIVLLLQVARHLMKVISRLGSGKKPVGTTAYMGRVEQLLEARSDVQKAED 476
YVP CTYEGDN+VLLLQVARHLMK +S+LGSG KPVGTTAYM RVEQL++ SDV+KAED
Sbjct: 903 YVPACTYEGDNVVLLLQVARHLMKTVSQLGSGNKPVGTTAYMARVEQLMQYHSDVEKAED 1082
Query: 477 WLNPNTVLRAFEARAARMSVACAKNLTKFSNPEEGFQELLADLVDAARAHCQLIVVSKFI 536
WL PN VL AFEARA+RMSVACA+NL+KF+NPEEGFQEL ADLVDAA AHCQLIVVSKFI
Sbjct: 1083WLKPNVVLEAFEARASRMSVACAQNLSKFANPEEGFQELAADLVDAAVAHCQLIVVSKFI 1262
Query: 537 EKLQQDIPGKGVKRQLEILCNIYALFHLHKHLGDFLSTGCITPKQGSLANDQLRSLYSQV 596
EKLQQDIPGKGVK+QLE+LC+IYALF LHKHLGDFLSTGCI PKQGSLA++QLR+LYSQV
Sbjct: 1263EKLQQDIPGKGVKKQLEVLCSIYALFLLHKHLGDFLSTGCINPKQGSLASEQLRNLYSQV 1442
Query: 597 RPNAIALVDAFNYTDHYLSSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGFQEYIRPMLK 656
RPNAIALVDAFNYTDHYL S+LGRYDGNVYPKLYEEAWKDPLNDSVVPDGF+EYI+PMLK
Sbjct: 1443RPNAIALVDAFNYTDHYLGSILGRYDGNVYPKLYEEAWKDPLNDSVVPDGFKEYIQPMLK 1622
Query: 657 QQLRNARL 664
QQLRNARL
Sbjct: 1623QQLRNARL 1646
>TC209943 homologue to UP|Q945U4 (Q945U4) Acyl-CoA oxidase , partial (19%)
Length = 590
Score = 230 bits (587), Expect = 1e-60
Identities = 108/123 (87%), Positives = 117/123 (94%)
Frame = +1
Query: 542 DIPGKGVKRQLEILCNIYALFHLHKHLGDFLSTGCITPKQGSLANDQLRSLYSQVRPNAI 601
DIPGKGVK+ LE+LC+IYALF LHKHLGDFLSTGCI PK GSLA++QLR+LYSQVRPNAI
Sbjct: 1 DIPGKGVKKPLEVLCSIYALFLLHKHLGDFLSTGCINPKPGSLASEQLRNLYSQVRPNAI 180
Query: 602 ALVDAFNYTDHYLSSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGFQEYIRPMLKQQLRN 661
ALVDAFNY DHYL S+LGRYDGNVYPKLYEEAWKDPLNDSVVPDGF+EYI+PMLKQQLRN
Sbjct: 181 ALVDAFNYPDHYLGSILGRYDGNVYPKLYEEAWKDPLNDSVVPDGFKEYIQPMLKQQLRN 360
Query: 662 ARL 664
ARL
Sbjct: 361 ARL 369
>TC228745 similar to UP|O65201 (O65201) Acyl-CoA oxidase , partial (68%)
Length = 1796
Score = 211 bits (537), Expect = 8e-55
Identities = 151/438 (34%), Positives = 218/438 (49%), Gaps = 12/438 (2%)
Frame = +1
Query: 198 DHGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYNTMDNGVLRFEHVRIPRDQMLMR 257
D GVH FIV +R + H PLPGI + D K G N +DNG LRF VRIPRD +L R
Sbjct: 94 DMGVHAFIVPIRDMKTHQPLPGIEIHDCFHKVG---LNGVDNGALRFRSVRIPRDNLLNR 264
Query: 258 VSQVTREGKYVQS----NVPRQLVYGTMVYVRQTIVSDASTAMSRAVCIAARYSAVRRQF 313
V+R+GKY S N G +V R + + + + A IA RYS +R+QF
Sbjct: 265 FGDVSRDGKYTSSLPTVNKRFAATLGELVGGRVGLAYSSVSVLKVAATIAIRYSLLRQQF 444
Query: 314 GGNNGSLESQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYTDVMKRLQANDFSTLPEA 373
G N E ++DY++QQ +L P+LAS YAF F L Y+ + K +D + +
Sbjct: 445 GPPN-QPEVSILDYQSQQHKLMPMLASTYAFHFATTNLVEKYSQMKK---THDDELVADV 612
Query: 374 HACTAGLKSLTTSATSDGIEECRKLCGGHGYLCSSGLPELFAVYVPTCTYEGDNIVLLLQ 433
HA +AGLK+ TS T+ + CR+ CGGHGY + L + T+EGDN VLL Q
Sbjct: 613 HALSAGLKAYVTSYTAKSLSICREACGGHGYAAVNRFGILRNDHDIFQTFEGDNTVLLQQ 792
Query: 434 VARHLMKVISRLGSGKKPVGTTAYMGR-VEQLLEARSDVQ---KAEDWL-NPNTVLRAFE 488
VA L+K G T Y+ + L + V + ED L +P L AF
Sbjct: 793 VAGDLLKQYKGKFKGGTFAVTWNYLRESMNTYLSQPNPVTARWEGEDHLRDPKFQLDAFR 972
Query: 489 ARAARMSVACAKNLTKFSNPEEGF---QELLADLVDAARAHCQLIVVSKFIEKLQQDIPG 545
R +R+ + A L K S F L L+ A +H + ++++KFIE + Q P
Sbjct: 973 YRTSRLLQSVAVRLRKHSKSLGDFGAWNRCLNHLLTLAESHIESVILAKFIEAV-QSCPD 1149
Query: 546 KGVKRQLEILCNIYALFHLHKHLGDFLSTGCITPKQGSLANDQLRSLYSQVRPNAIALVD 605
+ L+++C++YAL + +G + + + P + + L QVR A LVD
Sbjct: 1150PSSQAALKLVCDLYALDRIWNDIGTYRNVDYVAPNKAKAIHKLAEYLSFQVRNIARELVD 1329
Query: 606 AFNYTDHYLSSVLGRYDG 623
AF+ DH + + + G
Sbjct: 1330AFDLPDHVTRAPIAKRSG 1383
>TC217641 similar to UP|Q9LKX5 (Q9LKX5) Acyl-CoA oxidase ACX3 (At1g06290) ,
partial (72%)
Length = 1856
Score = 202 bits (513), Expect = 5e-52
Identities = 146/468 (31%), Positives = 223/468 (47%), Gaps = 28/468 (5%)
Frame = +3
Query: 12 NKAEFDVDAMKIVWAGSAHALEVSDRMSRLVASDPAFRKDHR------------PMLGRK 59
N FD M+ + H LE D + L+ P F HR PM ++
Sbjct: 132 NTISFDTREMRKLM--DCHNLEDRDWLFSLILQSPLFNPRHRAGRFFVCPDYNQPMEHQR 305
Query: 60 ELFKSTLKKAAYAW-KRIIELRLT----EEEASMLR-----SFVDEPAFTDL--HWGMFI 107
+ +T+K+ AY K + LT E+E L D L H+ ++
Sbjct: 306 Q---ATMKRIAYLLDKGVFRGWLTGNGPEQELRKLALHEVIGMYDHSLAVKLGVHFFLWG 476
Query: 108 PAIKGQGTEEQQQKWLPLAQRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSP 167
A+K GT+ KWL + I GC+A +ELGHG NV+G+ET T+D T EFVI++P
Sbjct: 477 GAVKFLGTKRHHDKWLNSTENYDIKGCFAMSELGHGRNVRGIETGTTYDSNTGEFVINTP 656
Query: 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGRDHGVHGFIVQLRSLDDHLPLPGITVGDIGM 227
+ K+W GG +TH +V+++L +G + GVH FI Q+R D ++ P I + D G
Sbjct: 657 CESGQKYWIGGAANHATHTIVFSQLYINGSNQGVHAFIAQIRDSDGNI-CPNIRIADCGH 833
Query: 228 KFGNGAYNTMDNGVLRFEHVRIPRDQMLMRVSQVTREGKYVQS--NVPRQLV--YGTMVY 283
K G N +DNG + F++VRIPR+ +L V+ V+ G+Y+ + N ++ +
Sbjct: 834 KIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPSGEYLSAIKNADQRFAAFLAPLTS 1004
Query: 284 VRQTIVSDASTAMSRAVCIAARYSAVRRQFGGNNGSLESQVIDYKTQQARLFPLLASAYA 343
R TI A ++ IA RY+ R+ F E ++DY + Q RL PLLA YA
Sbjct: 1005GRVTIAVSAVYISKISLAIAIRYALTRQAFSITPNGPEVFLLDYPSHQRRLLPLLAKVYA 1184
Query: 344 FRFVGEWLKWLYTDVMKRLQANDFSTLPEAHACTAGLKSLTTSATSDGIEECRKLCGGHG 403
F LK +Y V + ++N H ++ K+ T ++ECR+ CGG G
Sbjct: 1185MSFAANELKIMY--VNRTPKSN-----KAIHIVSSAYKATLTWNNMRTLQECREACGGQG 1343
Query: 404 YLCSSGLPELFAVYVPTCTYEGDNIVLLLQVARHLMKVISRLGSGKKP 451
+ + + T+EGDN VL+ Q+++ L KKP
Sbjct: 1344VKSENRVGNFMGEFDVHSTFEGDNNVLMQQISKALFAEYVASQKKKKP 1487
>TC223233 homologue to UP|Q945U4 (Q945U4) Acyl-CoA oxidase , partial (18%)
Length = 461
Score = 198 bits (503), Expect = 7e-51
Identities = 95/118 (80%), Positives = 105/118 (88%)
Frame = +2
Query: 5 DHLAFERNKAEFDVDAMKIVWAGSAHALEVSDRMSRLVASDPAFRKDHRPMLGRKELFKS 64
DHLAFERNKA+FDVD MKIVWAGS E+SDR+SRLVASDPAFRKD R LGRKELFK+
Sbjct: 107 DHLAFERNKAQFDVDEMKIVWAGSRQDFELSDRISRLVASDPAFRKDDRTTLGRKELFKN 286
Query: 65 TLKKAAYAWKRIIELRLTEEEASMLRSFVDEPAFTDLHWGMFIPAIKGQGTEEQQQKW 122
TL+KAAYAWKRI ELRL E+EA LRSFVD+PAFTDLHWGMF+PAI+GQ T+EQQQKW
Sbjct: 287 TLRKAAYAWKRINELRLNEQEAYKLRSFVDQPAFTDLHWGMFVPAIQGQRTDEQQQKW 460
>BF596579 similar to GP|15553480|gb| acyl-CoA oxidase {Glycine max}, partial
(11%)
Length = 238
Score = 129 bits (325), Expect = 3e-30
Identities = 60/79 (75%), Positives = 69/79 (86%)
Frame = +2
Query: 374 HACTAGLKSLTTSATSDGIEECRKLCGGHGYLCSSGLPELFAVYVPTCTYEGDNIVLLLQ 433
HACTA +KS TTSAT+DGIEECRKLCGGHGYLCS GLP+L + Y+P+C+YE DN VLLLQ
Sbjct: 2 HACTARVKSFTTSATADGIEECRKLCGGHGYLCSRGLPDLCSDYIPSCSYE*DNTVLLLQ 181
Query: 434 VARHLMKVISRLGSGKKPV 452
VARHL+K IS+LGS K PV
Sbjct: 182 VARHLLKTISQLGSSKLPV 238
>TC216734 similar to UP|Q96329 (Q96329) G6p (Short-chain acyl CoA oxidase)
(Acyl-coA dehydrogenase) (At3g51840/AtG6) , partial
(94%)
Length = 1501
Score = 58.9 bits (141), Expect = 7e-09
Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 10/335 (2%)
Frame = +2
Query: 114 GTEEQQQKWLPLAQRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSK 173
G+E Q+QK+LP ++Q + C+A TE +GS+ L+TTA T
Sbjct: 557 GSEAQKQKYLPSLAQLQTVACWALTEPDYGSDASALKTTA--------------TKVEGG 694
Query: 174 WWPGGLGKV---STHA---VVYARLITDGRDHGVHGFIVQLRSLDDHLPLPGITVGDIGM 227
W G + T+A VVYAR + + ++GFI++ + PG+TV I
Sbjct: 695 WILYGQKQSI*NRTYADVRVVYAR---NASANQINGFIIKKDA-------PGLTVTKIEN 844
Query: 228 KFGNGAYNTMDNGVLRFEHVRIPRDQMLMRVSQVTREGKYVQSNVPRQLVYGTMVYVRQT 287
K G + NG + V +P + + V+ K + V R +V + +
Sbjct: 845 KIG---LRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKVLA--VSRVMVAWQPIGISMG 1009
Query: 288 IVSDASTAMSRAVCIAARYSAVRRQFGGNNGSLESQVIDYKTQQARLFPLLASAYAFRFV 347
I + RY R+QFG + + ++ Q +L +L + A V
Sbjct: 1010IYD-----------MCHRYLKERKQFG-------APLAAFQISQQKLVQMLGNIQAMILV 1135
Query: 348 GEWLKWLYTDVMKRLQANDFSTLPEAHACTAGLKSLTTSATSDGIEEC----RKLCGGHG 403
G L LY E+ T G SL S + E R+L GG+G
Sbjct: 1136GWRLCKLY----------------ESGKMTPGQASLGKSWITLRARETAALGRELLGGNG 1267
Query: 404 YLCSSGLPELFAVYVPTCTYEGDNIVLLLQVARHL 438
L + + F P TYEG + L R +
Sbjct: 1268ILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 1372
>BM107749
Length = 426
Score = 56.2 bits (134), Expect = 5e-08
Identities = 38/119 (31%), Positives = 53/119 (43%)
Frame = +1
Query: 285 RQTIVSDASTAMSRAVCIAARYSAVRRQFGGNNGSLESQVIDYKTQQARLFPLLASAYAF 344
R TI A + IA RY+ RR F E ++DY + Q RL PLLA YA
Sbjct: 4 RVTIAVSAVYISKIXLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKVYAM 183
Query: 345 RFVGEWLKWLYTDVMKRLQANDFSTLPEAHACTAGLKSLTTSATSDGIEECRKLCGGHG 403
F LK + V + ++N H ++ K+ T ++ECR+ CGG G
Sbjct: 184 SFAANELKMM--XVNRTPKSN-----KAIHIVSSAYKATLTWNNMRTLQECREXCGGQG 339
>BF425554 similar to PIR|T46895|T468 acyl-CoA dehydrogenase (EC 1.3.99.3)
[validated] - Arabidopsis thaliana, partial (21%)
Length = 300
Score = 43.9 bits (102), Expect = 2e-04
Identities = 20/41 (48%), Positives = 29/41 (69%)
Frame = +3
Query: 114 GTEEQQQKWLPLAQRMQIIGCYAQTELGHGSNVQGLETTAT 154
G+E Q+QK+LP +M+ I C+A TE +GS+ L+TTAT
Sbjct: 111 GSEAQKQKYLPSLAQMKTIACWALTEPDYGSDASALKTTAT 233
>TC221505 similar to UP|Q9LMI7 (Q9LMI7) T2D23.2 protein, partial (9%)
Length = 613
Score = 33.5 bits (75), Expect = 0.31
Identities = 15/47 (31%), Positives = 28/47 (58%)
Frame = +2
Query: 571 FLSTGCITPKQGSLANDQLRSLYSQVRPNAIALVDAFNYTDHYLSSV 617
FL G ++ + S ++ L +++RP+A+ALV +F D +LS +
Sbjct: 200 FLRYGYLSTENASAPRKEVPKLCAELRPHALALVSSFGIPDAFLSPI 340
>TC231450
Length = 676
Score = 29.6 bits (65), Expect = 4.5
Identities = 12/43 (27%), Positives = 26/43 (59%)
Frame = -2
Query: 552 LEILCNIYALFHLHKHLGDFLSTGCITPKQGSLANDQLRSLYS 594
+++ C +YA+ H++ ++G+ T P+ L QLRS+++
Sbjct: 654 IQLCCTMYAISHVYIYVGE*RETDS*MPRNKLLTAMQLRSIFN 526
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,557,933
Number of Sequences: 63676
Number of extensions: 347659
Number of successful extensions: 1521
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of query: 664
length of database: 12,639,632
effective HSP length: 103
effective length of query: 561
effective length of database: 6,081,004
effective search space: 3411443244
effective search space used: 3411443244
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC149079.11