BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149050.11 - phase: 0
(163 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO984678 216 3e-57
BI967495 200 3e-52
TC227627 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (49%) 116 4e-27
TC216440 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (68%) 116 5e-27
CD409101 114 2e-26
TC227626 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (34%) 113 4e-26
TC213865 similar to UP|Q84PD9 (Q84PD9) Ring zinc finger protein-... 94 2e-20
BU544778 similar to GP|9502381|gb|A T12C24.29 {Arabidopsis thali... 84 4e-17
TC216438 homologue to UP|Q8GUU2 (Q8GUU2) RES protein, partial (14%) 80 3e-16
TC220583 80 6e-16
TC209092 80 6e-16
TC210359 similar to UP|Q6K4P9 (Q6K4P9) RING zinc finger protein-... 79 7e-16
TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI... 65 1e-11
TC221803 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI... 65 1e-11
TC219381 65 2e-11
TC228034 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A... 64 2e-11
TC220602 weakly similar to UP|Q9FL42 (Q9FL42) C3HC4-type RING zi... 60 4e-10
TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A... 60 4e-10
TC232492 weakly similar to UP|Q8VYW5 (Q8VYW5) AT5g45290/K9E15_7,... 60 6e-10
CO980352 59 1e-09
>CO984678
Length = 774
Score = 216 bits (551), Expect = 3e-57
Identities = 108/156 (69%), Positives = 123/156 (78%), Gaps = 1/156 (0%)
Frame = -1
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIALAYALTQPLRIREGASEDDIKSLP 68
LT+V L+ + FF +F + IVF ALFCI+ IIALAYA+ RIREGASE+DI SLP
Sbjct: 693 LTVVFLAFDVFF-IIFCIGMACIVFFALFCIIPIIALAYAM----RIREGASEEDILSLP 529
Query: 69 MYRFCQPNVMIMVDKNKTQL-EARTGSHNRSHISELSLHPDDSECCICLCPYVDGTELYR 127
MYRF Q N ++MVD NK QL + R S N SH+S LSLHPDDSECCICLCPYV+G ELYR
Sbjct: 528 MYRFSQSNSLVMVDDNKKQLIKGRVDSCNGSHMSALSLHPDDSECCICLCPYVEGAELYR 349
Query: 128 LPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
LPCTHHFHCECIGRWL+TKATCPLCKFNI GD +V
Sbjct: 348 LPCTHHFHCECIGRWLQTKATCPLCKFNILRGDTLV 241
>BI967495
Length = 710
Score = 200 bits (508), Expect = 3e-52
Identities = 96/130 (73%), Positives = 107/130 (81%), Gaps = 1/130 (0%)
Frame = -1
Query: 35 ALFCIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQL-EARTG 93
ALFCI+ IIALAYA+ RIREGASE+DI+SLPMYRF N ++MVD NK QL + R
Sbjct: 710 ALFCIIPIIALAYAM----RIREGASEEDIRSLPMYRFSLSNSLVMVDDNKKQLVKVRVD 543
Query: 94 SHNRSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
S N SH+SELSLHPDDSECCICLCPYV+G ELYRLPCTHHF+C CI RWLRTKATCPLCK
Sbjct: 542 SCNGSHMSELSLHPDDSECCICLCPYVEGEELYRLPCTHHFYCGCISRWLRTKATCPLCK 363
Query: 154 FNIRIGDIMV 163
FNI GD +V
Sbjct: 362 FNILRGDTLV 333
>TC227627 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (49%)
Length = 967
Score = 116 bits (291), Expect = 4e-27
Identities = 69/162 (42%), Positives = 96/162 (58%), Gaps = 7/162 (4%)
Frame = +3
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQ-IIALAYALTQPLRIREGASEDDIKSL 67
L +V L+ + FF A+F + ++ AL C + IIA+ YA+ +EGASE D+ L
Sbjct: 195 LAVVFLAFDVFF-AIFCVVLACLIGIALCCCLPCIIAILYAVAG----QEGASEADLSML 359
Query: 68 PMYRFCQPNVMIMVDKNK------TQLEARTGSHNRSHISELSLHPDDSECCICLCPYVD 121
P YRF I+ D++K + + T S ++ E +L P+D+ECCICLC Y D
Sbjct: 360 PKYRF-----RILSDEDKPSGGAGSMVPIETSSAYLAN--ERTLLPEDAECCICLCSYED 518
Query: 122 GTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
G EL+ LPC HHFH CI +WL+ ATCPLCK+NI G+ V
Sbjct: 519 GAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 644
>TC216440 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (68%)
Length = 1655
Score = 116 bits (290), Expect = 5e-27
Identities = 68/162 (41%), Positives = 94/162 (57%), Gaps = 7/162 (4%)
Frame = +1
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQ-IIALAYALTQPLRIREGASEDDIKSL 67
L++V L+ + FF A+F + ++ AL C + IIA+ YA+ +EGASE D+ L
Sbjct: 811 LSVVFLAFDVFF-AIFCVVLACLIGIALCCCLPCIIAILYAVAG----QEGASESDLSIL 975
Query: 68 PMYRFCQPNVMIMVDKNKTQLEARTGS------HNRSHISELSLHPDDSECCICLCPYVD 121
P YRF M+ +T E GS N ++E +L P+D+ECCIC+ Y D
Sbjct: 976 PKYRFQ------MLSNEETPGEGGGGSMIPMETSNGYSVNERTLSPEDAECCICISSYED 1137
Query: 122 GTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
G EL+ LPC HHFH CI +WL+ ATCPLCK+NI G+ V
Sbjct: 1138GAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 1263
>CD409101
Length = 606
Score = 114 bits (286), Expect = 2e-26
Identities = 46/53 (86%), Positives = 49/53 (91%)
Frame = -3
Query: 111 ECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
ECCICLCPYV+G ELYRLPCTHHFHCECIGRWL+TKATCPLCKFNI GD +V
Sbjct: 454 ECCICLCPYVEGAELYRLPCTHHFHCECIGRWLQTKATCPLCKFNILRGDTLV 296
>TC227626 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (34%)
Length = 834
Score = 113 bits (283), Expect = 4e-26
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +2
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQ-IIALAYALTQPLRIREGASEDDIKSL 67
L +V L+L FF A+F + ++ AL C + IIA+ YA+ +EGASE D+ L
Sbjct: 14 LAVVFLALXXFF-AIFCVXLACLIGIALCCCLPCIIAILYAVAG----QEGASEADLSML 178
Query: 68 PMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHI--SELSLHPDDSECCICLCPYVDGTEL 125
P Y+F ++ VDK + S +E +L +D+ECCICLC Y DG EL
Sbjct: 179 PKYKF---RILSDVDKPSGGAGSMVPIETSSAYLENERTLLLEDAECCICLCSYEDGAEL 349
Query: 126 YRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
+ LPC HHFH CI +WL+ ATCPLCK+NI G+ V
Sbjct: 350 HALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 463
>TC213865 similar to UP|Q84PD9 (Q84PD9) Ring zinc finger protein-like
protein, partial (27%)
Length = 853
Score = 94.4 bits (233), Expect = 2e-20
Identities = 48/118 (40%), Positives = 65/118 (54%), Gaps = 3/118 (2%)
Frame = +3
Query: 42 IIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHIS 101
I+A+ Y + P EGA++++I LP Y+F ++ K E+ G +
Sbjct: 3 ILAILYVVADP----EGATKEEIDQLPKYKF---RIIKEFKKEGDIEESSRGIMTETESE 161
Query: 102 ELSLHP---DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
+ H +D+ECCICL Y + EL LPC HHFHC CI +WL ATCPLCKFNI
Sbjct: 162 TAAEHVIALEDAECCICLSAYDNDAELRELPCNHHFHCTCIDKWLLINATCPLCKFNI 335
>BU544778 similar to GP|9502381|gb|A T12C24.29 {Arabidopsis thaliana},
partial (17%)
Length = 504
Score = 83.6 bits (205), Expect = 4e-17
Identities = 33/55 (60%), Positives = 39/55 (70%)
Frame = -1
Query: 102 ELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
E +L +D+ECCICL Y DG E LPC HHFHC C+ +WL ATCPLCK+NI
Sbjct: 492 EHALAEEDAECCICLSSYDDGVEXRELPCGHHFHCVCVDKWLYINATCPLCKYNI 328
>TC216438 homologue to UP|Q8GUU2 (Q8GUU2) RES protein, partial (14%)
Length = 650
Score = 80.5 bits (197), Expect = 3e-16
Identities = 32/54 (59%), Positives = 39/54 (71%)
Frame = +3
Query: 110 SECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
+ECCIC+ Y DG EL+ LPC HHFH CI +WL+ ATCPLCK+NI G+ V
Sbjct: 132 AECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 293
>TC220583
Length = 823
Score = 79.7 bits (195), Expect = 6e-16
Identities = 39/116 (33%), Positives = 59/116 (50%)
Frame = +2
Query: 38 CIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNR 97
CI+ ++ + +Q GA+ + I +LP+++F N D++ G
Sbjct: 98 CIISVLGIREDFSQ----NRGATVESINALPIFKFKLKNNENGDDQDVNAAIDEGGILAA 265
Query: 98 SHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
E + +D+ CCICL Y D EL LPC+H FH C+ +WL+ ATCPLCK
Sbjct: 266 GTEKERMISGEDAVCCICLAKYADDDELRELPCSHFFHVMCVDKWLKINATCPLCK 433
>TC209092
Length = 968
Score = 79.7 bits (195), Expect = 6e-16
Identities = 50/148 (33%), Positives = 76/148 (50%), Gaps = 2/148 (1%)
Frame = +1
Query: 8 RLTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIA--LAYALTQPLRIREGASEDDIK 65
+L ++C+ L + +SF ++F L C V +++ L Y ++ R GASED I
Sbjct: 325 KLQVLCIILLSWNAICYSF--PFLLFLLLCCCVPLMSTLLGYNMSMGSSAR-GASEDQIS 495
Query: 66 SLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLCPYVDGTEL 125
LP +R+ + N S SE ++ +D ECCICL Y D E+
Sbjct: 496 QLPSWRY-------------KGVHTNLDLGNDSQSSERLIN-EDPECCICLAKYKDKEEV 633
Query: 126 YRLPCTHHFHCECIGRWLRTKATCPLCK 153
+LPC+H FH +C+ +WLR + CPLCK
Sbjct: 634 RQLPCSHLFHLKCVDQWLRIISCCPLCK 717
>TC210359 similar to UP|Q6K4P9 (Q6K4P9) RING zinc finger protein-like,
partial (59%)
Length = 741
Score = 79.3 bits (194), Expect = 7e-16
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Frame = +1
Query: 38 CIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNR 97
CI+ I+ + + Q GAS + I +LP Y+F + +NK++ E+ +
Sbjct: 61 CIISILGVREDMAQT----RGASSESINALPTYKF-------KMKRNKSKGESNSAVGEG 207
Query: 98 SHIS-----ELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLC 152
++ E + +D+ CCICL Y + EL LPC+H FH +C+ +WL+ A CPLC
Sbjct: 208 GVVAAGTEKERMISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLC 387
Query: 153 KFNI 156
K +
Sbjct: 388 KSEV 399
>TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
finger protein; 17145-17621), partial (34%)
Length = 915
Score = 65.5 bits (158), Expect = 1e-11
Identities = 23/52 (44%), Positives = 39/52 (74%), Gaps = 1/52 (1%)
Frame = +2
Query: 108 DDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNIRI 158
D++ECCICL + DG ++ LP C H+FHC+C+ +WL ++CPLC+ ++++
Sbjct: 443 DETECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLTHHSSCPLCRASLKV 598
>TC221803 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
finger protein; 17145-17621), partial (34%)
Length = 772
Score = 65.5 bits (158), Expect = 1e-11
Identities = 23/52 (44%), Positives = 39/52 (74%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 DDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNIRI 158
D++ECCICL + DG ++ LP C H+FHC+C+ +WL ++CPLC+ ++++
Sbjct: 453 DETECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLTHHSSCPLCRASLKV 608
>TC219381
Length = 1169
Score = 64.7 bits (156), Expect = 2e-11
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Frame = +1
Query: 5 HSCRLTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIA--LAYALTQPLRIREGASED 62
H+ +L ++C+ L + +SF L V L C V +I+ L Y + +GAS+D
Sbjct: 802 HAPKLHVLCIILLAWNAMCYSFPFLLFVL--LCCCVPLISTLLGYNMNMASS-NKGASDD 972
Query: 63 DIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLCPYVDG 122
I LP +R + V +LE GS + +D ECCICL Y D
Sbjct: 973 QISQLPSWRHKEAGV---------KLELGNGSEGSKKLIN-----EDPECCICLAKYKDK 1110
Query: 123 TELYRLPCTHHFHCECI 139
E+ +LPC+H FH +C+
Sbjct: 1111EEVRQLPCSHMFHLKCV 1161
>TC228034 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;} , partial (67%)
Length = 947
Score = 64.3 bits (155), Expect = 2e-11
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = +3
Query: 60 SEDDIKSLPMYRF------CQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECC 113
+E++I +LP++++ C + M + + A N + + + DD C
Sbjct: 420 TEEEINALPVHKYKVSGPQCGGSSM---QQASSSAPAEKKQDNSNAVGSMKASDDDLTCS 590
Query: 114 ICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIG 159
+CL G L LPC H FH CI WLR + TCP+CKF G
Sbjct: 591 VCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSG 728
>TC220602 weakly similar to UP|Q9FL42 (Q9FL42) C3HC4-type RING zinc finger
protein-like, partial (37%)
Length = 590
Score = 60.5 bits (145), Expect = 4e-10
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 105 LHPDDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCK 153
L P+D+ C ICL Y L +P C H+FH +CI WLR ATCPLC+
Sbjct: 212 LKPNDNTCAICLSEYQPKETLRSIPECNHYFHADCIDEWLRLNATCPLCR 361
>TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;} , partial (19%)
Length = 582
Score = 60.5 bits (145), Expect = 4e-10
Identities = 26/64 (40%), Positives = 32/64 (49%)
Frame = +3
Query: 96 NRSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFN 155
N + + + DD C +CL G L LPC H FH CI WLR + TCP+CKF
Sbjct: 99 NSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFR 278
Query: 156 IRIG 159
G
Sbjct: 279 AGSG 290
>TC232492 weakly similar to UP|Q8VYW5 (Q8VYW5) AT5g45290/K9E15_7, partial
(6%)
Length = 582
Score = 59.7 bits (143), Expect = 6e-10
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +1
Query: 34 GALFCIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTG 93
G + ++ +I LA EG +D LP Y + NK Q
Sbjct: 25 GLVSLVINLIGLA----------EGTRNNDAPPLPCYMLSSH-----IQNNKQQSSESAS 159
Query: 94 SHNRSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTK-ATCPLC 152
+ N + +DS CC+CL E+ LPC+H FH C+ +WL+ + TCPLC
Sbjct: 160 ASNFN---------EDSWCCVCLSRLKAKDEIRVLPCSHKFHKICVNKWLKGRHKTCPLC 312
Query: 153 KFNI 156
+F++
Sbjct: 313 RFSM 324
>CO980352
Length = 639
Score = 58.5 bits (140), Expect = 1e-09
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = -2
Query: 108 DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGD 160
DD +CCIC YV G E+ L C H FH CI W+R K CP+CK + + +
Sbjct: 509 DDIKCCICQEEYVVGDEVGDLQCEHRFHVVCIQEWMRLKNWCPVCKVSAALSN 351
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,568,383
Number of Sequences: 63676
Number of extensions: 184275
Number of successful extensions: 2091
Number of sequences better than 10.0: 268
Number of HSP's better than 10.0 without gapping: 2036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2054
length of query: 163
length of database: 12,639,632
effective HSP length: 90
effective length of query: 73
effective length of database: 6,908,792
effective search space: 504341816
effective search space used: 504341816
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC149050.11