TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149039.1 + phase: 0 /pseudo
         (434 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    88  9e-18
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    50  2e-06
AW184779                                                               42  4e-04
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    35  0.050
BM528439 similar to GP|19310425|g At1g04920/F13M7_7 {Arabidopsis...    29  4.7

>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
          Length = 843

 Score = 87.8 bits (216), Expect = 9e-18
 Identities = 86/233 (36%), Positives = 105/233 (44%)
 Frame = +2

Query: 18  TINPGTTTSNSSC*AVSIRRVLPNKIRRP*ED*PVDSC*MEIFCTRETMTWYC*DVLMNM 77
           T++ G +TS+   *A +  + LP  IR  *E     S * E +C RET T     V M  
Sbjct: 128 TVSLGISTSSDMS*AKNTCQRLPTMIRGH*EGWRPVSS*AEAYCIRETTT*NLCGVWMPG 307

Query: 78  KQSS*CMMYMTVPSGPMLQGILCQGSCYGQVTTGWPWSMIATSTPESATNVKSMLIRFMC 137
           +Q +*    M         G+L  G    QV TG PW +I  S   +ATNVK   I  M 
Sbjct: 308 RQIT*SRKSMRARLERTPTGMLWPGRS*EQVITGLPWKVIVVSM*GNATNVKRSQIMSMP 487

Query: 138 LRTLSMLFHPHGRSQCGAST*LEELNRRLQMVIISS*WQLTTSPSGLKQHLIPM*PSKW* 197
            R L M   P G S CG       L+ R +MVI SS  +   SPSG +Q  IP     W 
Sbjct: 488 HRIL*MSCPPLGLSPCGE*MSSGPLSPRPRMVIASSS*R*IISPSGSRQLPIPTS*GVWW 667

Query: 198 LSSSRTTSYVDMVFPARLLPTMVQT*ITMWCKLFVKNSKLSIITLLPIDLR*M 250
             S R  S  DMV   RL  T   T*IT     F ++ K SI    P   R*+
Sbjct: 668 SGSLRKRSSADMVCQGRLSRTTAPT*ITR*WGKFARSLKSSITIPXPTGQR*I 826


>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 669

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 55/165 (33%), Positives = 76/165 (45%), Gaps = 1/165 (0%)
 Frame = +2

Query: 256 PTRISRELSRRW*PLTRTGMRCYPMLCMATVLPCAVQPGQPLSLLYMVWKQFFLWKWRSH 315
           P RIS+ LS+R    TR G RC       T L C  Q GQ  S  YM W+  +  + +S 
Sbjct: 8   PIRISKRLSKR*PCHTRIGTRCSHSRYTVTGLQCERQLGQRRSHWYMGWRLCYRLR*KSR 187

Query: 316 LSV*SWKQSYPR-LNGAKAGMIS*I*LRKNVWMPWLVDSHIKQE*RLPLTRKSILENSR* 374
               SW+    R  +G K  MIS   LR +   P ++ +   +E*R+  TR+    +S  
Sbjct: 188 -H*GSWQNPD*RNQSGLKRAMISSTSLRVSA*RP*VMGACTSKE*RVHSTRRYACASSMR 364

Query: 375 GNLY*KEG*ASNPTQGASGRLTMKVLMLSRRPSPVVL*SLHTWMV 419
             L *++    + T   +G  T K L+L R   P     L TWMV
Sbjct: 365 ETLC*RKCPMLSRTIEGNGPRTTKGLLL*RGLFPEEPWCLPTWMV 499


>AW184779 
          Length = 432

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 27/46 (58%), Positives = 31/46 (66%)
 Frame = +1

Query: 153 CGAST*LEELNRRLQMVIISS*WQLTTSPSGLKQHLIPM*PSKW*L 198
           CGA T* E L+ RLQM I S * QLTTSP+G KQ  + +*   W*L
Sbjct: 292 CGA*T*SEPLSPRLQMDITSF*SQLTTSPNGSKQFRMLV*LGVW*L 429


>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
          Length = 803

 Score = 35.4 bits (80), Expect = 0.050
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 18  TINPGTTTSNSSC*AVSIRRVLPNKIRRP*ED*PVDSC*MEIFCTRETMTWYC 70
           T++ G   S+ +  A S    LP   +    D    S * E +CTRETMTW+C
Sbjct: 522 TVSLGILISSDTLKAKSTHWRLPTTTKGERGDWQPASS*AEAYCTRETMTWFC 680


>BM528439 similar to GP|19310425|g At1g04920/F13M7_7 {Arabidopsis thaliana},
           partial (12%)
          Length = 433

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 4/40 (10%)
 Frame = +1

Query: 270 LTRTGMRCYPMLCMAT----VLPCAVQPGQPLSLLYMVWK 305
           L   G+RC+PM C  +    V+P      Q L  L++ W+
Sbjct: 247 LRMRGLRCHPMYCRGSSRMHVIPLLASRAQALRYLFVRWR 366


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.354    0.153    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,590,716
Number of Sequences: 63676
Number of extensions: 329868
Number of successful extensions: 3949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 3044
length of query: 434
length of database: 12,639,632
effective HSP length: 100
effective length of query: 334
effective length of database: 6,272,032
effective search space: 2094858688
effective search space used: 2094858688
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 60 (27.7 bits)