BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149038.3 + phase: 0
(1557 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 415 e-116
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 415 e-116
CO982036 228 2e-59
BU548243 200 4e-51
CO984748 182 1e-45
CO982898 105 7e-44
BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delal... 174 4e-43
BE211208 164 4e-40
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 118 3e-39
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 158 2e-38
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 156 6e-38
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 155 1e-37
BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (j... 92 3e-37
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 152 1e-36
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 149 9e-36
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 147 5e-35
BM892610 137 5e-32
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 136 6e-32
BF595216 77 2e-30
CO983062 74 3e-28
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 415 bits (1067), Expect = e-116
Identities = 207/512 (40%), Positives = 325/512 (63%), Gaps = 1/512 (0%)
Frame = +1
Query: 1037 LTHIEPTGYRQAMKQPQWLQAMQLEHEALMKNNTWTLVPLPADRQAVGCKWVFRTKQNPD 1096
++ IEP ++A+ W+ AMQ E E +N W LVP P +G KW+F+ K N +
Sbjct: 3187 VSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEE 3366
Query: 1097 GSINKYKARLVAKGFHQMPGFDYKETFSPVVKPVTVRSVLTLAVTNKWCIQQLDVNNAFL 1156
G I + KARLVA+G+ Q+ G D+ ETF+PV + ++R +L +A K+ + Q+DV +AFL
Sbjct: 3367 GVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFL 3546
Query: 1157 NGYLEEEVYMTQPPGF-EAVDPSLVCKLNKALYGLKQAPRAWFERLKSTLLKLGFCSSKC 1215
NGYL EEVY+ QP GF + P V +L KALYGLKQAPRAW+ERL L + G+
Sbjct: 3547 NGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGI 3726
Query: 1216 DPSLFILHANQHSTFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEV 1275
D +LF+ ++ +YVDDI+ G S +++ V+++ +EF + +G+L YFLG++V
Sbjct: 3727 DKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQV 3906
Query: 1276 HYSENGSLLLSQKKYIQDLLVKANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVG 1335
E+ S+ LSQ +Y ++++ K M NA+ +P + KL+K + D + +RS++G
Sbjct: 3907 KQMED-SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIG 4083
Query: 1336 GLQYVTVTRPEISYSVNKVCQFLSAPLEDHWKAVKRILRYLKGTIHHGLLINPAPMHQPL 1395
L Y+T +RP+I+Y+V ++ + P H VKRIL+Y+ GT +G++ P+
Sbjct: 4084 SLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMY--CHCSNPM 4257
Query: 1396 SLTAFCDADWASDPDDRRSTSGACILLGPNLISWWAKKQTLVARSSAEAEYRSLAQASAE 1455
L +CDADWA DDR+STSG C LG NLISW++KKQ V+ S+AEAEY + + ++
Sbjct: 4258 -LVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 4434
Query: 1456 VLWIQSLLKELKVPTAIPQIFCDNLSTVSLAHNPVLHSRTKHMELDIFFVREKVISKDLI 1515
++W++ +LKE V + ++CDN+S ++++ NPV HSRTKH+++ ++R+ V K +
Sbjct: 4435 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 4614
Query: 1516 VSHIPAQYQVADILTKPLSASRFLELRNKLRV 1547
+ H+ + Q+ADI TK L A++F +LR KL +
Sbjct: 4615 LKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
Score = 172 bits (437), Expect = 8e-43
Identities = 167/679 (24%), Positives = 260/679 (37%), Gaps = 20/679 (2%)
Frame = +1
Query: 205 ELESQLLTQEARNEKFKKALVGETASVNLTHAENSGEKNGHNQPQTGSYPDQQFNISGNP 264
+L+ + EA E K+ + V +++ GS + + G
Sbjct: 1168 QLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKN 1347
Query: 265 TGNNSSQYFNPNFGGRN---------GSRGRGFRGNRFRGRG--GRNFGRGNIQCQICYK 313
GN FNP GR G +R R G + R +C C K
Sbjct: 1348 AGNQRGLGFNPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGK 1527
Query: 314 TGHDASICYHRLSVPPQYEGYGSLGGNFGGNLGSGYGPATGFGTHSNVWMQGVGQRNPSY 373
GH CYH P +G + +W+
Sbjct: 1528 YGHIKPFCYHLHGHPH-------------------HGTQSSNSRKKMMWV---------- 1620
Query: 374 GAPRAPFPPQFGNSRPPAPQAYITGNESTSSNSFNNGWYPDSGATHHVTPDANNLMDAAS 433
P +A ++ S WY DSG + H+T L++
Sbjct: 1621 ----------------PKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEP 1752
Query: 434 FSGSDQMYIGNGQGLAINSIGSMSFSSPFSPNTTLTLNNLLHVPSITKNLVSVSQFCKDN 493
S S Y+ G G IG P+ LN +L V +T NL+S+SQ C D
Sbjct: 1753 CSTS---YVTFGDGSKGKIIGMGKLVHDGLPS----LNKVLLVKGLTANLISISQLC-DE 1908
Query: 494 NVFFEFHSNICYVKSQDSTKILLKGHLGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLN 553
F + C V ++ S ++L+KG S S +
Sbjct: 1909 GFNVNFTKSECLVTNEKS-EVLMKG------------------------------SRSKD 1995
Query: 554 NCFSPSSLSLSRSQCNNGSVYTPIHTSGSSNDSSNSLSLYKVWHNRLGHPHHEVVRSVM- 612
NC+ ++TP TS SS S+ ++WH R GH H ++ ++
Sbjct: 1996 NCY----------------LWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIID 2127
Query: 613 KLCNQQLPNKSFTD--FCSACCLGKSHRLPSVSSK-TVYNKPFELIFCDLWGPASVESHG 669
K + +PN + C C +GK ++ + ++ EL+ DL GP VES G
Sbjct: 2128 KGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLG 2307
Query: 670 GYSYFLICVDAYSRYTWIFPLKLKSHTLITFQNFKTMVELQYNLPIKSVQTDGGGEFR-- 727
G Y + VD +SR+TW+ ++ KS T F+ ++ + + IK +++D G EF
Sbjct: 2308 GKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENS 2487
Query: 728 PFTQFLTTLGITHRLTCPHTHHQNGSVERKHRHIVETGLTLLANAKLPLHYWDHAFLTAT 787
FT+F T+ GITH + T QNG VERK+R + E +L +LP + W A TA
Sbjct: 2488 RFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTAC 2667
Query: 788 YLINRLPSPILNNKSPFFLLHL---QIPDYKFLKSFGCSCFPFTRPYNNHKLELRSKECV 844
Y+ NR+ L +P L + + P K FG C+ K++ +S +
Sbjct: 2668 YIHNRV---TLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGI 2838
Query: 845 FLGYSPSHKGYKCLDPTGR 863
FLGYS + + Y+ + R
Sbjct: 2839 FLGYSTNSRAYRVFNSRTR 2895
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 415 bits (1066), Expect = e-116
Identities = 215/572 (37%), Positives = 341/572 (59%), Gaps = 17/572 (2%)
Frame = +1
Query: 993 SVEPVTSQPSTQAEPHRIHPNNTHSMATRAKH-----------GIVQKRKHPTLL----- 1036
S E + S EP+ P+ S+ + H G+ + + ++
Sbjct: 3010 SAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCF 3189
Query: 1037 LTHIEPTGYRQAMKQPQWLQAMQLEHEALMKNNTWTLVPLPADRQAVGCKWVFRTKQNPD 1096
++ IEP ++A+ W+ AMQ E E +N W LVP P +G KW+F+ K N +
Sbjct: 3190 VSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEE 3369
Query: 1097 GSINKYKARLVAKGFHQMPGFDYKETFSPVVKPVTVRSVLTLAVTNKWCIQQLDVNNAFL 1156
G I + KARLVA+G+ Q+ G D+ ETF+PV + ++R +L +A K+ + Q+DV +AFL
Sbjct: 3370 GVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFL 3549
Query: 1157 NGYLEEEVYMTQPPGF-EAVDPSLVCKLNKALYGLKQAPRAWFERLKSTLLKLGFCSSKC 1215
NGYL EE Y+ QP GF + P V +L KALYGLKQAPRAW+ERL L + G+
Sbjct: 3550 NGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGI 3729
Query: 1216 DPSLFILHANQHSTFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEV 1275
D +LF+ ++ +YVDDI+ G S +++ V+++ +EF + +G+L YFLG++V
Sbjct: 3730 DKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQV 3909
Query: 1276 HYSENGSLLLSQKKYIQDLLVKANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVG 1335
E+ S+ LSQ KY ++++ K M NA+ +P + KL+K + D + +RS++G
Sbjct: 3910 KQMED-SIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIG 4086
Query: 1336 GLQYVTVTRPEISYSVNKVCQFLSAPLEDHWKAVKRILRYLKGTIHHGLLINPAPMHQPL 1395
L Y+T +RP+I+Y+V ++ + P H VKRIL+Y+ GT +G++
Sbjct: 4087 SLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHC---SDS 4257
Query: 1396 SLTAFCDADWASDPDDRRSTSGACILLGPNLISWWAKKQTLVARSSAEAEYRSLAQASAE 1455
L +CDADWA DDR+STSG C LG NLISW++KKQ V+ S+AEAEY + + ++
Sbjct: 4258 MLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 4437
Query: 1456 VLWIQSLLKELKVPTAIPQIFCDNLSTVSLAHNPVLHSRTKHMELDIFFVREKVISKDLI 1515
++W++ +LKE V + ++CDN+S ++++ NPV HSRTKH+++ ++R+ V K +
Sbjct: 4438 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 4617
Query: 1516 VSHIPAQYQVADILTKPLSASRFLELRNKLRV 1547
+ H+ + Q+ADI TK L A++F +LR KL +
Sbjct: 4618 LEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713
Score = 167 bits (423), Expect = 3e-41
Identities = 132/467 (28%), Positives = 207/467 (44%), Gaps = 9/467 (1%)
Frame = +1
Query: 406 SFNNGWYPDSGATHHVTPDANNLMDAASFSGSDQMYIGNGQGLAINSIGSMSFSSPFSPN 465
S WY DSG + H+T L++ S S Y+ G G S G ++ +
Sbjct: 1672 SAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTS---YVTFGDG----SKGKITGMGKLVHD 1830
Query: 466 TTLTLNNLLHVPSITKNLVSVSQFCKDNNVFFEFHSNICYVKSQDSTKILLKGHLGDDGL 525
+LN +L V +T NL+S+SQ C D F + C V ++ S ++L+KG
Sbjct: 1831 GLPSLNKVLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKS-EVLMKG------- 1983
Query: 526 YQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCNNGSVYTPIHTSGSSND 585
S S +NC+ ++TP TS SS
Sbjct: 1984 -----------------------SRSKDNCY----------------LWTPQETSYSSTC 2046
Query: 586 SSNSLSLYKVWHNRLGHPHHEVVRSVM-KLCNQQLPNKSFTD--FCSACCLGKSHRLPSV 642
+ K+WH R GH H ++ ++ K + +PN + C C +GK ++
Sbjct: 2047 LFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 2226
Query: 643 SSK-TVYNKPFELIFCDLWGPASVESHGGYSYFLICVDAYSRYTWIFPLKLKSHTLITFQ 701
+ ++ EL+ DL GP VES GG Y + VD +SR+TW+ ++ KS T F+
Sbjct: 2227 KLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFK 2406
Query: 702 NFKTMVELQYNLPIKSVQTDGGGEFR--PFTQFLTTLGITHRLTCPHTHHQNGSVERKHR 759
++ + + IK +++D G EF FT+F T+ GITH + T QNG VERK+R
Sbjct: 2407 ELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNR 2586
Query: 760 HIVETGLTLLANAKLPLHYWDHAFLTATYLINRLPSPILNNKSPFFLLHL---QIPDYKF 816
+ E +L +LP + W A TA Y+ NR+ L +P L + + P K
Sbjct: 2587 TLQEAARVMLHAKELPYNLWAEAMNTACYIHNRV---TLRRGTPTTLYEIWKGRKPTVKH 2757
Query: 817 LKSFGCSCFPFTRPYNNHKLELRSKECVFLGYSPSHKGYKCLDPTGR 863
FG C+ K++ +S +FLGYS + + Y+ + R
Sbjct: 2758 FHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 2898
Score = 38.9 bits (89), Expect = 0.018
Identities = 46/211 (21%), Positives = 87/211 (40%), Gaps = 18/211 (8%)
Frame = +1
Query: 32 LDETNYLQWKQQVEGVLRG--TKMVRHVVSPQIPPVFLNDAAREAGTENPA--YTEWEEQ 87
LD TNY WK ++ L+ ++ + V+ P L+ + P +T+ E++
Sbjct: 46 LDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDE 225
Query: 88 DSLLCTWILSTISSSLLSRFVRLRFSHQVWDEIHNYCYTQMRTRSRQLRSELRTIT---- 143
+L + L+ + + + RL + V + T S+ S L+ +
Sbjct: 226 LALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFE 405
Query: 144 ----KGTRSIAEFIARIRSISESLMSIGDPVAHRDLIETVLEALPEEFNPIVATVNSQTE 199
K I +F I I+ + ++G+ + L+ +L +LP+ F+ V + +
Sbjct: 406 NLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQD 585
Query: 200 VISL--DELESQLLTQEA----RNEKFKKAL 224
+ ++ DEL L T E R EK K L
Sbjct: 586 ICNMRVDELIGSLQTFELGLSDRTEKKSKNL 678
>CO982036
Length = 674
Score = 228 bits (581), Expect = 2e-59
Identities = 118/207 (57%), Positives = 148/207 (71%)
Frame = -2
Query: 1228 STFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEVHYSENGSLLLSQ 1287
+ ++LVYVD I+ITGSS +LIQ L KLN+ F LK LGKLDYF+ IEV + LL S
Sbjct: 655 TVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPD--LLFSL 485
Query: 1288 KKYIQDLLVKANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVGGLQYVTVTRPEI 1347
+ I ++ + A I+SPM ++ KL+K S+ S PTF+RS+VG LQY TV RPEI
Sbjct: 484 RTSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEI 305
Query: 1348 SYSVNKVCQFLSAPLEDHWKAVKRILRYLKGTIHHGLLINPAPMHQPLSLTAFCDADWAS 1407
S++VNKVCQF+S PL+ HW VKRILRYLKG++ +GL + PA QPL + FCDADWAS
Sbjct: 304 SFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWAS 125
Query: 1408 DPDDRRSTSGACILLGPNLISWWAKKQ 1434
DD+RSTSGA + LGPNLISWW KQ
Sbjct: 124 AVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>BU548243
Length = 599
Score = 200 bits (509), Expect = 4e-51
Identities = 102/165 (61%), Positives = 122/165 (73%), Gaps = 7/165 (4%)
Frame = -1
Query: 1398 TAFCDADWASDPDDRRSTSGACILLGPNLISWWAKKQTLVARSSAEAEYRSLAQASAEVL 1457
TA CDA WASD DD RST G+ I LGPNLISWW++KQ + A+SS EAEYRS+AQ SAE+
Sbjct: 599 TALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELT 420
Query: 1458 WIQSLLKELKVPTAIPQIFCDNLSTVSLAHNPVLHSRTKHMELDIFFVREKVISKDLIVS 1517
WIQ+LL EL++P P I CDN S V++AHN V HSRTKHME+D+FFV EKV+SK L +
Sbjct: 419 WIQALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIF 240
Query: 1518 HIPAQYQVADILTKPLSASRFLELRNKLRVS-------DPMSLRG 1555
HIPA Q A ILTKPLS++RF L++KL V MSLRG
Sbjct: 239 HIPALDQWAGILTKPLSSARFTFLKSKLTVKGFSSEKPXXMSLRG 105
>CO984748
Length = 810
Score = 182 bits (461), Expect = 1e-45
Identities = 129/300 (43%), Positives = 152/300 (50%), Gaps = 2/300 (0%)
Frame = -2
Query: 306 IQCQICYKTGHDASICYHRLSVPPQYEGYGSLGGNFGGNLGSGYGPATGFGTHSNVWMQG 365
IQCQ YK HDA+ CYHR + P Y + Y H
Sbjct: 803 IQCQXXYKFDHDAADCYHRFN--PNY-------------VAQQYNQNQSLNQH------- 690
Query: 366 VGQRNPSYGAPRAPFPPQFGNSRP--PAPQAYITGNESTSSNSFNNGWYPDSGATHHVTP 423
RN SY S+ APQAY+ T + WY + GATHHVT
Sbjct: 689 ---RNYSYQRSNCQALNNKSQSQQNAQAPQAYLANANPTQQSQ---NWYINYGATHHVTA 528
Query: 424 DANNLMDAASFSGSDQMYIGNGQGLAINSIGSMSFSSPFSPNTTLTLNNLLHVPSITKNL 483
NLM+ SG++Q+++GNGQGL I GS F+SPF+ N LTLNNLLHVP ITKNL
Sbjct: 527 SPQNLMNEVPTSGNEQVFLGNGQGLPIT--GSTVFNSPFASNVKLTLNNLLHVPHITKNL 354
Query: 484 VSVSQFCKDNNVFFEFHSNICYVKSQDSTKILLKGHLGDDGLYQFDQPYVPSVSRTASSS 543
VSVS F KD NVFFEFHS+ C VKSQ ILL+G L DGLY F S +SS
Sbjct: 353 VSVS*FAKD-NVFFEFHSSHCVVKSQVDGSILLRGALSQDGLYVF--------SNLLNSS 201
Query: 544 SVATSSLSLNNCFSPSSLSLSRSQCNNGSVYTPIHTSGSSNDSSNSLSLYKVWHNRLGHP 603
T + N SSLS S CNN S S+ ++SN SL +WHNRLGHP
Sbjct: 200 FKFTVGKAAANVHM-SSLSDLSSHCNN--------VSTSALNTSN-YSLVSLWHNRLGHP 51
>CO982898
Length = 816
Score = 105 bits (261), Expect(2) = 7e-44
Identities = 53/115 (46%), Positives = 69/115 (59%)
Frame = -1
Query: 794 PSPILNNKSPFFLLHLQIPDYKFLKSFGCSCFPFTRPYNNHKLELRSKECVFLGYSPSHK 853
P+ +N P+ L Q+ DY F + FGC+CFP RPYN K +S EC+FLG SHK
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHK 418
Query: 854 GYKCLDPTGRMFISKDVIFNEYKFPYSELFTSGQSSSPPTTSSDHTPLPSFLFPL 908
YKCL P G++ +SKDVIFNE FPY ELF S+ P P+P+ + P+
Sbjct: 417 NYKCLAPAGKL-VSKDVIFNEI*FPYKELFLPDSSTCIPVPQ----PIPATVPPV 268
Score = 92.8 bits (229), Expect(2) = 7e-44
Identities = 45/74 (60%), Positives = 55/74 (73%)
Frame = -3
Query: 721 DGGGEFRPFTQFLTTLGITHRLTCPHTHHQNGSVERKHRHIVETGLTLLANAKLPLHYWD 780
D GGEF P T+FL GI H+L PHT +QN VERK RHIV+ GL+LL++A LPL +W
Sbjct: 814 DWGGEF*PLTEFLND*GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKFWG 638
Query: 781 HAFLTATYLINRLP 794
HAF+T +LINRLP
Sbjct: 637 HAFITPVFLINRLP 596
>BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delalandii},
partial (5%)
Length = 667
Score = 174 bits (440), Expect = 4e-43
Identities = 97/227 (42%), Positives = 138/227 (60%), Gaps = 5/227 (2%)
Frame = -3
Query: 393 QAYITGNESTSSNSFNNGWYPDSGATHHVTPDANNLMDAASFSGSDQMYIGNGQGLAINS 452
Q ++T + +T S S WYPDSGA+HHVT + N+ A F Q+ IGNGQGL INS
Sbjct: 659 QIFLTSSAATPSQS----WYPDSGASHHVTNMSQNIQQVAPFEEPIQIIIGNGQGLNINS 492
Query: 453 IGSMSFSSPFSPNTTLTLNNLLHVPSITKNLVSVSQFCKDNNVFFEFHSNICYVKSQDST 512
G +FSSP +P +L L+NLL VP+ITKNL+ VSQFCKDNNV+FEFHS +C KS D+
Sbjct: 491 SGLSTFSSPINPQFSLVLSNLLFVPTITKNLIRVSQFCKDNNVYFEFHSYVCLFKS*DTK 312
Query: 513 KILLKGHLGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCNNGS 572
+LL+G +G DGLYQ Q + S S S + + SL+N + + + C+
Sbjct: 311 LVLLEGFVGSDGLYQSPQLF---ASMPQSKSYLKSFRSSLSNNIVVKTSIVKTTNCSTKF 141
Query: 573 VY-----TPIHTSGSSNDSSNSLSLYKVWHNRLGHPHHEVVRSVMKL 614
++ T + + S NS+S + +WH+RLGH + +++V +L
Sbjct: 140 LFVSANNTVVVDLVVNTTSCNSVS-FPIWHSRLGHHSVDAMKTVFRL 3
>BE211208
Length = 413
Score = 164 bits (414), Expect = 4e-40
Identities = 80/133 (60%), Positives = 105/133 (78%)
Frame = +2
Query: 1225 NQHSTFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEVHYSENGSLL 1284
+++ ++LVYVDDI+ITG S LIQ LV LN+ FSLK LG+LDYFLGIEVH++ GS+L
Sbjct: 14 DRNLVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVL 193
Query: 1285 LSQKKYIQDLLVKANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVGGLQYVTVTR 1344
L+Q KYI DLL K +MA A I+SPM ++ +L+K G + +SDPT +RS+VG LQY T+TR
Sbjct: 194 LTQSKYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITR 373
Query: 1345 PEISYSVNKVCQF 1357
PEIS++ NKVCQF
Sbjct: 374 PEISFAANKVCQF 412
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 118 bits (295), Expect(2) = 3e-39
Identities = 54/97 (55%), Positives = 71/97 (72%)
Frame = +1
Query: 1032 HPTLLLTHIEPTGYRQAMKQPQWLQAMQLEHEALMKNNTWTLVPLPADRQAVGCKWVFRT 1091
HPTLL T EP+ +QA+ P W QAMQ + +ALM+N T TL LP+ + A+ CKWVFR
Sbjct: 4 HPTLLFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRI 183
Query: 1092 KQNPDGSINKYKARLVAKGFHQMPGFDYKETFSPVVK 1128
K+N G++N+Y++RLVAKGFH G DY ETFSPV++
Sbjct: 184 KENLYGTLNRYRSRLVAKGFHLKFGCDYSETFSPVIE 294
Score = 63.9 bits (154), Expect(2) = 3e-39
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +3
Query: 1130 VTVRSVLTLAVTNKWCIQQLDVNNAFLNGYLEEEVYMTQPPGFE 1173
VT+R +L +A+TN W +QQ+D+NNAFL+G L EEVYM Q PGFE
Sbjct: 297 VTIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGFE 428
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 158 bits (400), Expect = 2e-38
Identities = 75/154 (48%), Positives = 108/154 (69%), Gaps = 1/154 (0%)
Frame = +2
Query: 1397 LTAFCDADWASDPDDRRSTSGACILLGPNLISWWAKKQTLVARSSAEAEYRSLAQASAEV 1456
L+ +CDADWA P DRRSTSG C+ +G NL+SW +KKQT+VARSSAEAEYRS+A + E+
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 1457 LWIQSLLKELKVPTAIP-QIFCDNLSTVSLAHNPVLHSRTKHMELDIFFVREKVISKDLI 1515
+WI+ L+EL+ + +++CDN + + +A NPV H RTKH+E+D F+REK++SK+++
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376
Query: 1516 VSHIPAQYQVADILTKPLSASRFLELRNKLRVSD 1549
I + Q DILTK L + + +KL D
Sbjct: 377 TEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYD 478
>AI855899 similar to GP|2244960|emb| retrotransposon like protein {Arabidopsis
thaliana}, partial (18%)
Length = 418
Score = 156 bits (395), Expect = 6e-38
Identities = 76/136 (55%), Positives = 100/136 (72%)
Frame = +1
Query: 1299 NMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVGGLQYVTVTRPEISYSVNKVCQFL 1358
NM + NGI++PM SS KL+K+GS + + +R IVG LQYVT+TRP I+Y+VNKV +F+
Sbjct: 10 NMLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFM 189
Query: 1359 SAPLEDHWKAVKRILRYLKGTIHHGLLINPAPMHQPLSLTAFCDADWASDPDDRRSTSGA 1418
S+PL+ + VKRILRYL GT+ GLL+ PA M +SL A+ D DW SDP + RSTSG+
Sbjct: 190 SSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGS 369
Query: 1419 CILLGPNLISWWAKKQ 1434
CI G NLI+W +KKQ
Sbjct: 370 CIFSGSNLIAWSSKKQ 417
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 155 bits (392), Expect = 1e-37
Identities = 77/221 (34%), Positives = 134/221 (59%), Gaps = 1/221 (0%)
Frame = +1
Query: 1326 DPTFFRSIVGGLQYVTVTRPEISYSVNKVCQFLSAPLEDHWKAVKRILRYLKGTIHHGLL 1385
D T FR ++G L+Y+ +RP I ++V+ + +F+ P H +A KR+LR +KGTI G+L
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 1386 INPAPMHQPLSLTAFCDADWASDPDDRRSTSGACILLGPNLISWWAKKQTLVARSSAEAE 1445
L + D+DW DP+ +ST G + ++ +KKQ ++A S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 1446 YRSLAQASAEVLWIQSLLKELKVPTAIP-QIFCDNLSTVSLAHNPVLHSRTKHMELDIFF 1504
Y + + + + +W+ +LL+ELK+ P + DN S ++LA +P LH R+KH+EL +
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 1505 VREKVISKDLIVSHIPAQYQVADILTKPLSASRFLELRNKL 1545
+R++V ++ V + A+ Q+AD++TKP+ SRF ++ ++L
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (japonica
cultivar-group)}, partial (3%)
Length = 413
Score = 92.0 bits (227), Expect(2) = 3e-37
Identities = 45/71 (63%), Positives = 53/71 (74%)
Frame = +1
Query: 1292 QDLLVKANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVGGLQYVTVTRPEISYSV 1351
+DLL K MA A I+SPM SS KL+K GS+ DPT + S+VG LQY T+TRPE SYSV
Sbjct: 199 RDLLPKTKMAEAQPISSPMVSSCKLSKSGSDLFQDPTLYGSVVGALQYATLTRPEFSYSV 378
Query: 1352 NKVCQFLSAPL 1362
NKVCQF+S PL
Sbjct: 379 NKVCQFMSQPL 411
Score = 83.6 bits (205), Expect(2) = 3e-37
Identities = 39/62 (62%), Positives = 49/62 (78%)
Frame = +2
Query: 1216 DPSLFILHANQHSTFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEV 1275
DPSLF+ Q++ F+LVYVDDI ITG+ LIQQL+ +LN++F+LK LG LDYFLGIEV
Sbjct: 2 DPSLFVYKQQQYTVFLLVYVDDITITGNCVLLIQQLISQLNSQFALKQLGLLDYFLGIEV 181
Query: 1276 HY 1277
Y
Sbjct: 182 KY 187
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 152 bits (384), Expect = 1e-36
Identities = 77/152 (50%), Positives = 102/152 (66%), Gaps = 1/152 (0%)
Frame = -3
Query: 1057 AMQLEHEALMKNNTWTLVPLPADRQAVGCKWVFRTKQNPDGSINKYKARLVAKGFHQMPG 1116
AMQ E +NN W LV P + +G KWVFR K + G I + KARLVAKG++Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 1117 FDYKETFSPVVKPVTVRSVLTLAVTNKWCIQQLDVNNAFLNGYLEEEVYMTQPPGFEAVD 1176
DY+ET++PV + +R +L + + Q+DV +AFLNG ++EEVY+ QPPGFE D
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1177 -PSLVCKLNKALYGLKQAPRAWFERLKSTLLK 1207
P+ V KL KALYGLKQAPRAW+ER+ + LL+
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 149 bits (376), Expect = 9e-36
Identities = 71/126 (56%), Positives = 91/126 (71%), Gaps = 1/126 (0%)
Frame = -2
Query: 1074 VPLPADRQAVGCKWVFRTKQNPDGSINKYKARLVAKGFHQMPGFDYKETFSPVVKPVTVR 1133
VPLP + VGC+WV+ K P G +++ KARLVAKG+ Q+ G DY +TFSPV K TVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1134 SVLTLAVTNKWCIQQLDVNNAFLNGYLEEEVYMTQPPGFEAV-DPSLVCKLNKALYGLKQ 1192
L +A W + QLD+ NAFL+G LEE++YM QPPGF A + LVCKL+++LYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1193 APRAWF 1198
+PRAWF
Sbjct: 46 SPRAWF 29
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 147 bits (370), Expect = 5e-35
Identities = 87/179 (48%), Positives = 112/179 (61%), Gaps = 2/179 (1%)
Frame = +1
Query: 1097 GSINKYKARLVAKGFHQMPGFDYKETFSPVVKPVTVRSVLTLAVTNKWCIQQLDVNNAFL 1156
G+I+++KARLVAK + Q+ G DY TFSPV K V + ++AV W + LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 1157 NGYLEEEVYMTQPPGFEAVDPS--LVCKLNKALYGLKQAPRAWFERLKSTLLKLGFCSSK 1214
+GYLEEEVYM QP GF A S +VC+L ++ YGLKQ+PRAW + + S +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHE 381
Query: 1215 CDPSLFILHANQHSTFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGI 1273
D S+F H+ Q +++VYVDDI ITGS I L L +F KDLGKL YFLGI
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>BM892610
Length = 421
Score = 137 bits (344), Expect = 5e-32
Identities = 59/96 (61%), Positives = 77/96 (79%)
Frame = -3
Query: 788 YLINRLPSPILNNKSPFFLLHLQIPDYKFLKSFGCSCFPFTRPYNNHKLELRSKECVFLG 847
YLINRLP+ L + P + + ++P+Y FL++FGCSC+PF RPYN HKL+ RS EC+FLG
Sbjct: 413 YLINRLPTTSLKFQVPCTVFN-KLPNYNFLRNFGCSCYPFLRPYNKHKLDFRSHECLFLG 237
Query: 848 YSPSHKGYKCLDPTGRMFISKDVIFNEYKFPYSELF 883
YS HKGYKCL P G++++SKDVIFNE K+PYS+LF
Sbjct: 236 YSTPHKGYKCLSPNGKLYVSKDVIFNELKYPYSDLF 129
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 136 bits (343), Expect = 6e-32
Identities = 64/128 (50%), Positives = 85/128 (66%)
Frame = +3
Query: 1042 PTGYRQAMKQPQWLQAMQLEHEALMKNNTWTLVPLPADRQAVGCKWVFRTKQNPDGSINK 1101
P+ R+A+ P W QAM E +AL N TW LVPLP + VGC+WV+ K P+G +++
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 1102 YKARLVAKGFHQMPGFDYKETFSPVVKPVTVRSVLTLAVTNKWCIQQLDVNNAFLNGYLE 1161
KARLVAKG+ Q+ G +Y +TFSPV TVR L +A W + QLD+ NAFL+G LE
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 1162 EEVYMTQP 1169
E++YM QP
Sbjct: 381 EDIYMEQP 404
>BF595216
Length = 421
Score = 77.0 bits (188), Expect(2) = 2e-30
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +3
Query: 1140 VTNKWCIQQLDVNNAFLNGYLEEEVYMTQPPGFEAVDPSLVCKLNKALY 1188
+T W IQQLDVNNAFLNG L+EEVYM QPPGF++ SLVCKL+KA+Y
Sbjct: 273 LTYHWPIQQLDVNNAFLNGILQEEVYMQQPPGFDSTTKSLVCKLHKAIY 419
Score = 75.9 bits (185), Expect(2) = 2e-30
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +1
Query: 1092 KQNPDGSINKYKARLVAKGFHQMPGFDYKETFSPVVKPVTVRSVLTLAVT 1141
K+N DG++NKYKA+LVAKGFHQ G DY ETFS V+KP+T+R +LTLAVT
Sbjct: 124 KENSDGTVNKYKAKLVAKGFHQQYGTDYIETFSLVIKPITMRLLLTLAVT 273
Score = 47.4 bits (111), Expect = 5e-05
Identities = 22/39 (56%), Positives = 27/39 (68%)
Frame = +2
Query: 656 FCDLWGPASVESHGGYSYFLICVDAYSRYTWIFPLKLKS 694
F DL PA S GYSY++ VDA++RYTWIF L+ KS
Sbjct: 5 FSDLCSPAPFVSSTGYSYYVTFVDAFTRYTWIFLLRHKS 121
>CO983062
Length = 390
Score = 73.9 bits (180), Expect(3) = 3e-28
Identities = 35/54 (64%), Positives = 40/54 (73%)
Frame = +3
Query: 1405 WASDPDDRRSTSGACILLGPNLISWWAKKQTLVARSSAEAEYRSLAQASAEVLW 1458
WAS+ DDRRSTS A I G NLISWW+KKQ + ARSS EAEY+ L Q S E+ W
Sbjct: 228 WASNIDDRRSTSRAAIFPGRNLISWWSKKQKVTARSSTEAEYQILVQTSIELTW 389
Score = 55.5 bits (132), Expect(3) = 3e-28
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 1343 TRPEISYSVNKVCQFLSAPLEDHWKAVKRILRYLK 1377
TRPEI+Y VNKV Q+++ PL+ HW VKRILRYLK
Sbjct: 44 TRPEINYVVNKVXQYMTNPLDSHWAVVKRILRYLK 148
Score = 36.2 bits (82), Expect(3) = 3e-28
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 1373 LRYLKGTIHHGLLINPAPMHQPLSLTAFCDA 1403
++ +GTI HGL + PA + +P++L FCDA
Sbjct: 133 IKISQGTIFHGLSLQPASVSKPMALYXFCDA 225
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,038,145
Number of Sequences: 63676
Number of extensions: 1473376
Number of successful extensions: 15151
Number of sequences better than 10.0: 606
Number of HSP's better than 10.0 without gapping: 12472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14329
length of query: 1557
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1447
effective length of database: 5,635,272
effective search space: 8154238584
effective search space used: 8154238584
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC149038.3