BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148996.1 - phase: 0
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 54 2e-08
TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 53 5e-08
TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 53 5e-08
TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protei... 53 5e-08
TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%) 51 2e-07
TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 51 2e-07
TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment... 51 2e-07
TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 51 2e-07
TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial... 51 2e-07
TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 51 2e-07
TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 50 3e-07
TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 50 3e-07
TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 49 8e-07
TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein,... 49 8e-07
TC227829 UP|CAP2_SOYBN (P51061) Phosphoenolpyruvate carboxylase ... 32 0.099
TC229893 UP|Q8H928 (Q8H928) Phosphoenolpyruvate carboxylase , c... 31 0.17
TC227184 UP|Q6Q2Z9 (Q6Q2Z9) Phosphoenolpyruvate carboxylase , p... 27 2.4
TC210063 similar to GB|AAO63387.1|28950927|BT005323 At1g05270 {A... 27 3.2
TC231061 similar to UP|BRAP_HUMAN (Q7Z569) BRCA1-associated prot... 27 4.2
TC217081 homologue to UP|Q6Q2Z8 (Q6Q2Z8) Phosphoenolpyruvate car... 26 5.5
>TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 778
Score = 53.9 bits (128), Expect = 2e-08
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLH 60
K K I E GS KR ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 165 KAEKKISKEGGSEKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE 344
Query: 61 KIVEEVAKNVAALNQK-LLVERDLWVGVKELYPKYLARCA 99
K+ +E A +A N+K + R++ V+ + P LA+ A
Sbjct: 345 KLAQE-ASRLARYNKKPTITSREIQTAVRLVLPGELAKHA 461
>TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 712
Score = 52.8 bits (125), Expect = 5e-08
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLH 60
K K I E GS KR ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 159 KAEKKISKEGGSEKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE 338
Query: 61 KIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 339 KLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 455
>TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 667
Score = 52.8 bits (125), Expect = 5e-08
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLH 60
K K I E GS KR ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 165 KAEKKISKEGGSEKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE 344
Query: 61 KIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 345 KLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 461
>TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protein, partial
(83%)
Length = 512
Score = 52.8 bits (125), Expect = 5e-08
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLH 60
K K I E G KR ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 6 KAEKKIPKEGGGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE 185
Query: 61 KIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E A+ + + R++ V+ + P LA+ A
Sbjct: 186 KLAQEAARLARYNKKPTITSREIQTAVRLVLPGELAKHA 302
>TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%)
Length = 592
Score = 51.2 bits (121), Expect = 2e-07
Identities = 23/81 (28%), Positives = 48/81 (58%)
Frame = +3
Query: 19 TKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLL 78
+K+ +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+ +E A+ + +
Sbjct: 177 SKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTI 356
Query: 79 VERDLWVGVKELYPKYLARCA 99
R++ V+ + P LA+ A
Sbjct: 357 TSREIQTAVRLVLPGELAKHA 419
>TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 675
Score = 50.8 bits (120), Expect = 2e-07
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +2
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E G+ K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 179 KAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 358
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 359 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 484
>TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment), partial
(97%)
Length = 509
Score = 50.8 bits (120), Expect = 2e-07
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Frame = +1
Query: 3 SKKGKNIILEVGSSSGTKRRTVE----FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDM 58
+K K I + S K+RT + +K +I++V K+VHPD+ I+ +S+ +MN +ND+
Sbjct: 124 TKAEKKIPKDAASGEKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDI 303
Query: 59 LHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLAR 97
K+ +E ++ + + R++ V+ + P L +
Sbjct: 304 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELPK 420
>TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (97%)
Length = 734
Score = 50.8 bits (120), Expect = 2e-07
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E G+ K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 159 KAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 338
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 339 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 464
>TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial (82%)
Length = 752
Score = 50.8 bits (120), Expect = 2e-07
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E G+ K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 75 KAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 254
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 255 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 380
>TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 752
Score = 50.8 bits (120), Expect = 2e-07
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +1
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E G+ K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 214 KAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 393
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 394 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 519
>TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 744
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 12 EVGSSSGTKRRTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNV 70
E G +++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+ +E ++
Sbjct: 168 EGGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLA 347
Query: 71 AALNQKLLVERDLWVGVKELYPKYLARCA 99
+ + R++ V+ + P LA+ A
Sbjct: 348 RYNKKPTITSREIQTAVRLVLPGELAKHA 434
>TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 710
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 12 EVGSSSGTKRRTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNV 70
E G +++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+ +E ++
Sbjct: 213 EGGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLA 392
Query: 71 AALNQKLLVERDLWVGVKELYPKYLARCA 99
+ + R++ V+ + P LA+ A
Sbjct: 393 RYNKKPTITSREIQTAVRLVLPGELAKHA 479
>TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (63%)
Length = 541
Score = 48.9 bits (115), Expect = 8e-07
Identities = 23/85 (27%), Positives = 48/85 (56%)
Frame = +2
Query: 15 SSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALN 74
SS + +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+ +E ++
Sbjct: 20 SSLSLSKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNK 199
Query: 75 QKLLVERDLWVGVKELYPKYLARCA 99
+ + R++ V+ + P LA+ A
Sbjct: 200 KPTITSREIQTAVRLVLPGELAKHA 274
>TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(94%)
Length = 583
Score = 48.9 bits (115), Expect = 8e-07
Identities = 22/80 (27%), Positives = 47/80 (58%)
Frame = +1
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+ +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+ +E ++ + +
Sbjct: 187 KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTIT 366
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ V+ + P LA+ A
Sbjct: 367 SREIQTAVRLVLPGELAKHA 426
>TC227829 UP|CAP2_SOYBN (P51061) Phosphoenolpyruvate carboxylase (PEPCase) ,
complete
Length = 3192
Score = 32.0 bits (71), Expect = 0.099
Identities = 17/63 (26%), Positives = 33/63 (51%), Gaps = 9/63 (14%)
Frame = +1
Query: 41 LDITVESIEMMNDIMN---------DMLHKIVEEVAKNVAALNQKLLVERDLWVGVKELY 91
++ V+++ M+ ++ N D++ + + +AALN +LLV +DLW +L
Sbjct: 2434 IEENVKNLNMLQEMYNQWPFFRVTLDLVEMVFAKGDPKIAALNDRLLVSKDLWPFGDQLR 2613
Query: 92 PKY 94
KY
Sbjct: 2614 NKY 2622
>TC229893 UP|Q8H928 (Q8H928) Phosphoenolpyruvate carboxylase , complete
Length = 3536
Score = 31.2 bits (69), Expect = 0.17
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Frame = +3
Query: 41 LDITVESIEMMNDIMN---------DMLHKIVEEVAKNVAALNQKLLVERDLWVGVKELY 91
++ V ++ M+ ++ N D++ + + +A LN +LLV +DLW+ +L
Sbjct: 2595 IEKNVNNLNMLQEMYNQWPFFRVTLDLVEMVFAKGDPKIAGLNDRLLVSKDLWLFGDQLR 2774
Query: 92 PKY 94
KY
Sbjct: 2775 NKY 2783
>TC227184 UP|Q6Q2Z9 (Q6Q2Z9) Phosphoenolpyruvate carboxylase , partial (63%)
Length = 2132
Score = 27.3 bits (59), Expect = 2.4
Identities = 14/61 (22%), Positives = 34/61 (54%)
Frame = +1
Query: 22 RTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLVER 81
R ++ K+ + V+ +VHPD+ +++ + ++ +D L V +A N + + L+++
Sbjct: 556 RELKGKRPLVPVSIEVHPDVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLAVELLQK 735
Query: 82 D 82
D
Sbjct: 736 D 738
>TC210063 similar to GB|AAO63387.1|28950927|BT005323 At1g05270 {Arabidopsis
thaliana;} , partial (39%)
Length = 641
Score = 26.9 bits (58), Expect = 3.2
Identities = 14/47 (29%), Positives = 29/47 (60%)
Frame = +3
Query: 39 PDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLVERDLWV 85
P+ D + ++ M+D +DML +++E++K L + L+ ERD ++
Sbjct: 159 PNADDLNKMLKEMDD--SDMLTLVIQEMSKEFPTLMETLVHERDQYM 293
>TC231061 similar to UP|BRAP_HUMAN (Q7Z569) BRCA1-associated protein (BRAP2)
(Impedes mitogenic signal propagation) (IMP) , partial
(3%)
Length = 846
Score = 26.6 bits (57), Expect = 4.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 51 MNDIMNDMLHKIVEEVAKNVAALNQKLLVERDLW 84
M DI N+ L K EE +A +NQKL+ +++W
Sbjct: 297 MQDIQNE-LEKCTEE-RNAIAEVNQKLIKNQEIW 392
>TC217081 homologue to UP|Q6Q2Z8 (Q6Q2Z8) Phosphoenolpyruvate carboxylase ,
partial (42%)
Length = 1423
Score = 26.2 bits (56), Expect = 5.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +3
Query: 46 ESIEMMNDIMN---------DMLHKIVEEVAKNVAALNQKLLVERDLW 84
++++M+ D+ N D++ + + +AAL KLLV +LW
Sbjct: 729 KNLQMLQDMYNQWPFFRVSLDLVEMVFAKGDPGIAALYDKLLVSEELW 872
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,973,892
Number of Sequences: 63676
Number of extensions: 53811
Number of successful extensions: 265
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148996.1