Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148995.13 - phase: 0 
         (160 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC217207                                                              119  6e-28
TC217206 similar to GB|AAM16233.1|20334744|AY093972 AT3g45210/T1...   110  2e-25
TC213941 similar to GB|AAO39924.1|28372884|BT003696 At4g04630 {A...    95  2e-20
TC206077 similar to UP|O80698 (O80698) F8K4.12, partial (31%)          86  8e-18
TC206076 similar to UP|O80698 (O80698) F8K4.12, partial (43%)          85  2e-17
TC212475 weakly similar to GB|AAM16233.1|20334744|AY093972 AT3g4...    79  1e-15
TC223607 similar to GB|AAO39924.1|28372884|BT003696 At4g04630 {A...    70  6e-13
TC233961 similar to UP|Q944R0 (Q944R0) AT3g15040/K15M2_18, parti...    67  4e-12
BU543998                                                               60  4e-10
BI427247                                                               57  3e-09
BU551037                                                               57  3e-09
TC210353                                                               50  5e-07
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro...    37  0.005
BM094336                                                               32  0.17
TC232940 homologue to UP|Q7XVJ5 (Q7XVJ5) OJ000126_13.10 protein,...    31  0.29
TC232844 similar to UP|Q9SP09 (Q9SP09) DnaJ-like protein, partia...    28  1.9
BG882960                                                               28  2.4
TC223974                                                               28  2.4
BI497733                                                               28  2.4
TC229637 similar to UP|KIWI_ARATH (O65154) RNA polymerase II tra...    27  3.2

>TC217207 
          Length = 737

 Score =  119 bits (298), Expect = 6e-28
 Identities = 67/133 (50%), Positives = 90/133 (67%), Gaps = 4/133 (3%)
 Frame = +2

Query: 32  EFDEADVWNMSYSNSNTNIEPKKGVPGLKRVSRKMEANNKVNPLASSSLPMNIPDWSKIL 91
           EF E+D++N + +NS    E  K V   +  +    +  +V   A +SLP+N+PDWSKIL
Sbjct: 131 EFHESDLYNSARANSP---ELAKSVRSSRFHNYSSSSAARVG--APASLPVNVPDWSKIL 295

Query: 92  KEEY-KKKKESSDDEDEG---DYDGVVQLPPHEYLARTRGASLSVHEGKGRTLKGRDLRS 147
            +EY + ++ + DD+DE    + DGV ++PPHE+LARTR AS SVHEG GRTLKGRDL  
Sbjct: 296 GDEYGRNQRRNYDDDDEARSDEEDGVGRVPPHEFLARTRIASFSVHEGVGRTLKGRDLSR 475

Query: 148 VRNAIWKKVGFED 160
           VRNAIW K GF+D
Sbjct: 476 VRNAIWAKTGFQD 514


>TC217206 similar to GB|AAM16233.1|20334744|AY093972 AT3g45210/T14D3_150
           {Arabidopsis thaliana;} , partial (44%)
          Length = 721

 Score =  110 bits (276), Expect = 2e-25
 Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
 Frame = +2

Query: 5   RKSFLSRTSYIFPETNFNQKSSQGKELEFDEADVWNMSYSNSNTNIEPKKGVPGLKRVSR 64
           R + + R +Y F     +  S      EF E+D++N + +NS    E +K V   +  + 
Sbjct: 59  RMTNIRRATYRFLPA-MDTDSFSDSNFEFQESDLYNSARANSP---EFRKSVRASRFHNY 226

Query: 65  KMEANNKVNPLASSSLPMNIPDWSKILKEEYKKKKESSDDEDEGDY-DGVVQLPPHEYLA 123
                    P+   SLP+N+PDWSKIL +E+ + +  + DE + D  DG  ++PPHE+LA
Sbjct: 227 SSSGGRVGTPV---SLPVNVPDWSKILGDEFGRNQRRNYDEAQSDEEDGDGRVPPHEFLA 397

Query: 124 RTRGASLSVHEGKGRTLKGRDLRSVRNAIWKKVGFED 160
           +T  AS SVHEG GRTLKGRDL  VRNAIW K GF+D
Sbjct: 398 KTGIASFSVHEGVGRTLKGRDLSRVRNAIWAKTGFQD 508


>TC213941 similar to GB|AAO39924.1|28372884|BT003696 At4g04630 {Arabidopsis
           thaliana;} , partial (40%)
          Length = 776

 Score = 94.7 bits (234), Expect = 2e-20
 Identities = 70/187 (37%), Positives = 93/187 (49%), Gaps = 34/187 (18%)
 Frame = +2

Query: 6   KSFLSRTSY--IFPETNFNQKSSQGKELEFDEADVWNMSYSNSNTNI----------EPK 53
           K  ++ T Y  +F   ++     + K+ +FDE DVW+++  +S                 
Sbjct: 83  KGLITFTIYRGVFLNKSWGVGGREMKDRDFDEEDVWSVANDDSGKETTRACKESCGSSSS 262

Query: 54  KGVPGLKRVSRKM-EANNKVNPL----------ASSSLPMNIPDWSKILKEEYKKKKESS 102
                L    RK+  ANN  NPL           SSS PM+IPDWSKI  +  KK   + 
Sbjct: 263 SSAWRLPAAPRKIPRANNNANPLPAASDAPLVKGSSSAPMDIPDWSKIYGKSCKKGSTAD 442

Query: 103 D-------DEDEGDYDGVVQLPPHEY----LARTRGASLSVHEGKGRTLKGRDLRSVRNA 151
           D       D+D+ D D +V  PPHE+    LAR++ +S SV EG GRTLKGRDL  VRNA
Sbjct: 443 DGASNKGGDDDDDDDDDMV--PPHEWIARKLARSQISSFSVCEGMGRTLKGRDLSKVRNA 616

Query: 152 IWKKVGF 158
           I  K GF
Sbjct: 617 ILTKTGF 637


>TC206077 similar to UP|O80698 (O80698) F8K4.12, partial (31%)
          Length = 780

 Score = 85.9 bits (211), Expect = 8e-18
 Identities = 61/199 (30%), Positives = 88/199 (43%), Gaps = 40/199 (20%)
 Frame = +3

Query: 1   MASSRKSFLSRTSYIFPETNFNQKSSQGKELEFDEADVWNMSYSNSNTNIEP-----KKG 55
           MA  RK   SR+        ++Q S+     E  E DVW           +P       G
Sbjct: 96  MAKGRKLTTSRSERFLGTYAYSQGSAAVNPSELREEDVWGAGDDAGEREWDPHFAAMSNG 275

Query: 56  VPGLKRVSRKMEANNKVNPLA---------------------------------SSSLPM 82
               +R+ R  + + +V  L+                                 ++S PM
Sbjct: 276 GGSRRRIPRDTDVHRRVGGLSLAFEAPASGASPRIVHQFRAREEMASTPRVRHMATSAPM 455

Query: 83  NIPDWSKILK-EEYKKKKESSDDEDEGDYDGVVQLPPHEYLARTRG-ASLSVHEGKGRTL 140
           N+PDWSKIL+ +      +  +DEDE +      +PPHEYLAR++   + SV EG GRTL
Sbjct: 456 NVPDWSKILRVDSVDSLNDDYNDEDESE-----MVPPHEYLARSQTMVANSVFEGVGRTL 620

Query: 141 KGRDLRSVRNAIWKKVGFE 159
           KGRDL  VR+A+W + GF+
Sbjct: 621 KGRDLSRVRDAVWSQTGFD 677


>TC206076 similar to UP|O80698 (O80698) F8K4.12, partial (43%)
          Length = 1225

 Score = 84.7 bits (208), Expect = 2e-17
 Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 40/199 (20%)
 Frame = +3

Query: 1   MASSRKSFLSRTSYIFPETNFNQKSSQGKELEFDEADVWNMSYSNSNTNIEP------KK 54
           MA  RK   SR+        ++Q S+     E  E DVW       +   EP        
Sbjct: 135 MAKGRKLTTSRSERFLGTYAYSQGSAALNPSELREEDVWGAGDDAGDREWEPHAAALNNS 314

Query: 55  GVPGLKRVSRKMEANNKVNPLA---------------------------------SSSLP 81
           GV   +R+ R  E + +V  L+                                 ++S P
Sbjct: 315 GV-SRRRIPRDTEEHRRVGGLSLAFEAPASGSSPRMVHQFRAREEMTSTPRGRHMATSAP 491

Query: 82  MNIPDWSKILKEEYKKKKESSDDEDEGDYDGVVQLPPHEYLARTRG-ASLSVHEGKGRTL 140
           +N+PDWSKIL+ +     ES +DED  + +    +PPHEYLAR++   + SV EG GRTL
Sbjct: 492 VNVPDWSKILRVD---SVESINDEDGDESE---MMPPHEYLARSQKMVANSVFEGVGRTL 653

Query: 141 KGRDLRSVRNAIWKKVGFE 159
           KGRDL  VR+A+W + GF+
Sbjct: 654 KGRDLSRVRDAVWNQTGFD 710


>TC212475 weakly similar to GB|AAM16233.1|20334744|AY093972
           AT3g45210/T14D3_150 {Arabidopsis thaliana;} , partial
           (35%)
          Length = 458

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 38/60 (63%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
 Frame = +3

Query: 102 SDDEDEG-DYDGVVQLPPHEYLARTRGASLSVHEGKGRTLKGRDLRSVRNAIWKKVGFED 160
           +DD +EG D +   ++PPHE+LAR R AS SVHEG GRTLKGRDL ++RNAIW K GF+D
Sbjct: 6   NDDNNEGYDDERSGRVPPHEFLARNRVASFSVHEGVGRTLKGRDLSTLRNAIWAKTGFQD 185


>TC223607 similar to GB|AAO39924.1|28372884|BT003696 At4g04630 {Arabidopsis
           thaliana;} , partial (29%)
          Length = 617

 Score = 69.7 bits (169), Expect = 6e-13
 Identities = 44/98 (44%), Positives = 54/98 (54%), Gaps = 21/98 (21%)
 Frame = +3

Query: 82  MNIPDWSKILKEEYKKKKESSDDED-----------EGDYDGVV------QLPPHEY--- 121
           +NIPDWSKI + +  K   S  D+D           + D DG        +LPPHE+   
Sbjct: 15  VNIPDWSKIYRTKTPKNSVSRFDDDYDGDGAANYGGDSDEDGEENDESDSKLPPHEFIAR 194

Query: 122 -LARTRGASLSVHEGKGRTLKGRDLRSVRNAIWKKVGF 158
            LAR+R +S SV EG GRTLKGRDL  VRN +  K GF
Sbjct: 195 RLARSRISSFSVLEGAGRTLKGRDLSKVRNDVLSKTGF 308


>TC233961 similar to UP|Q944R0 (Q944R0) AT3g15040/K15M2_18, partial (25%)
          Length = 487

 Score = 67.0 bits (162), Expect = 4e-12
 Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 79  SLPMNIPDWSKILKEEYKKKKESSDDEDEGDYDGVVQLPPHEYLARTRGAS----LSVHE 134
           S P+N+P    ++       +E  DD+   D      LPPHE +AR    S     SV E
Sbjct: 219 SAPVNVP----LMPMRRHHHREFDDDDGNEDAAEEEMLPPHEIVARNSAQSPMLAYSVLE 386

Query: 135 GKGRTLKGRDLRSVRNAIWKKVGFED 160
           G GRTLKGRDLR VRNA+W++ GF D
Sbjct: 387 GVGRTLKGRDLRXVRNAVWRQTGFLD 464


>BU543998 
          Length = 571

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
 Frame = -1

Query: 103 DDEDEGDYDGVVQLPPHEY----LARTRGASLSVHEGKGRTLKGRDLRSVRNAIWKKVGF 158
           DDEDE D      +PPHE+    LAR++ +S SV EG GRTLKGRDL  VRNAI  K GF
Sbjct: 553 DDEDEDD-----MIPPHEWIARKLARSQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGF 389


>BI427247 
          Length = 316

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 27/37 (72%), Positives = 29/37 (77%)
 Frame = +3

Query: 124 RTRGASLSVHEGKGRTLKGRDLRSVRNAIWKKVGFED 160
           RT+  S SVHEG GRTLKGRDL  VRNAIW K GF+D
Sbjct: 18  RTKRFSSSVHEGVGRTLKGRDLSRVRNAIWAKTGFQD 128


>BU551037 
          Length = 173

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 26/29 (89%), Positives = 27/29 (92%)
 Frame = -2

Query: 132 VHEGKGRTLKGRDLRSVRNAIWKKVGFED 160
           +HEG G TLKGRDLRSVRNAIWKKVGFED
Sbjct: 172 MHEGIGSTLKGRDLRSVRNAIWKKVGFED 86


>TC210353 
          Length = 438

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
 Frame = +3

Query: 1   MASSRKSFLSRTSYIFP-ETNFNQKSSQGKELE----FDEADVWNMSYSNSNTNIEPKKG 55
           MAS +  F SR+    P  ++ +   S   +LE    FDE++++N + +N++        
Sbjct: 147 MASRKNHFTSRSHRFLPVASDIHDSVSLTMDLESAFEFDESEIYNSARANNSFEFRRSLH 326

Query: 56  VPGLKRVSRKMEANNKVNPLASSSLPMNIPDWSKILKEEY 95
             G    ++K  +++  +P   +S+P+NIPDWSKIL +EY
Sbjct: 327 GRGSNSSAKKKPSSSSGDP---ASVPVNIPDWSKILGDEY 437


>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
           partial (8%)
          Length = 581

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = +2

Query: 29  KELEFDEADVWNMSYSNS---NTNIEPKKGVPGLKRVSRKM--EANNKVNPLASSSLPMN 83
           + L F+E  +W  S+  +   +T +   K +     V+  +  +ANN V+P+     P++
Sbjct: 47  QSLSFEENTLWVGSFVEALVLDTLLATAKSLACFLVVTGSLLTDANNLVSPMVDGRFPLD 226

Query: 84  IPDWSKILKEEYKKKKESSDDEDEGD 109
            P   K   EE K   ++ DD+D+ D
Sbjct: 227 QPCKGKHTSEENKDASDTEDDDDDDD 304


>BM094336 
          Length = 284

 Score = 31.6 bits (70), Expect = 0.17
 Identities = 15/35 (42%), Positives = 20/35 (56%)
 Frame = +1

Query: 79  SLPMNIPDWSKILKEEYKKKKESSDDEDEGDYDGV 113
           S P+NIPDWS+I + +  K    S     GDYD +
Sbjct: 61  SAPLNIPDWSQIYRNKSNKTTPKSVSR-FGDYDDI 162



 Score = 26.2 bits (56), Expect = 7.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 102 SDDEDEGDYDGVVQLPPHEY 121
           SDDE+E + +   +LPPHE+
Sbjct: 225 SDDEEEEEDEYDTKLPPHEF 284


>TC232940 homologue to UP|Q7XVJ5 (Q7XVJ5) OJ000126_13.10 protein, partial
           (13%)
          Length = 796

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +3

Query: 132 VHEGKGRTLKGRDLRSVRNAIWKK 155
           V EG GRTLKGRDLR V+     K
Sbjct: 645 VLEGVGRTLKGRDLRQVKKPFCAK 716


>TC232844 similar to UP|Q9SP09 (Q9SP09) DnaJ-like protein, partial (35%)
          Length = 466

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 54  KGVPGLKRVSRKM-EANNKVNPLASSSLPMNI-PDWSKILKEEYKKKKESSDDEDEGDYD 111
           KG     ++SR++ +A+ K+ P+    L +N+ P W K  K  + +K     +    D  
Sbjct: 137 KGTTKKMKISREIADASGKIMPV-EEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLV 313

Query: 112 GVVQLPPHEYLAR 124
            ++   PH   AR
Sbjct: 314 FIIDEKPHSVFAR 352


>BG882960 
          Length = 386

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 131 SVHEGKGRTLKGRDLRSV-RNAIWKKVG 157
           S+HEGKG+T  G+D R   ++++ KK G
Sbjct: 147 SIHEGKGKTPGGKDSRDFQQSSVCKKGG 230


>TC223974 
          Length = 429

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 95  YKKKKESSDDEDEGDYDGVVQLPPHEYLARTRGAS 129
           ++  +   + E EGD DGVVQ  P   +AR R  S
Sbjct: 421 FENGEVEGEGEGEGDLDGVVQR*PDVGVARRRSGS 317


>BI497733 
          Length = 427

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 42  SYSNSNTNIEPKKGVPGLK 60
           SYSN+N+N+  KKG+  LK
Sbjct: 370 SYSNANSNLSRKKGLQSLK 314


>TC229637 similar to UP|KIWI_ARATH (O65154) RNA polymerase II transcriptional
           coactivator KIWI, partial (55%)
          Length = 743

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 64  RKMEANNKVNPLASSSLPMNIPDWSKI-LKEEYKKKKESSDDEDEGDYDGVVQLPPHEYL 122
           +K+ A   +NPL  SS   +  +  K  L E+   K +  DD+D  D D     PP + L
Sbjct: 106 KKLFARVFLNPLTHSSHNSHTTETEKKNLLEKMSGKAKRRDDDDASDADSEGHAPPMKSL 285

Query: 123 AR 124
            +
Sbjct: 286 KK 291


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.308    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,643,798
Number of Sequences: 63676
Number of extensions: 78765
Number of successful extensions: 489
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of query: 160
length of database: 12,639,632
effective HSP length: 90
effective length of query: 70
effective length of database: 6,908,792
effective search space: 483615440
effective search space used: 483615440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)


Medicago: description of AC148995.13