BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148970.12 + phase: 0
(560 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227252 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase , ... 723 0.0
TC207073 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, pa... 252 3e-67
TC227253 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase , ... 229 2e-60
TC227254 homologue to UP|Q9FEL1 (Q9FEL1) Lysyl-tRNA synthetase (... 144 8e-35
BI424545 weakly similar to GP|4325324|gb|A lysyl-tRNA synthetase... 127 1e-29
BI942627 homologue to GP|28851946|gb lysyl-tRNA synthetase {Pseu... 127 1e-29
TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-li... 73 4e-13
TC210702 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, pa... 47 2e-05
TC224888 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-li... 47 2e-05
TC225015 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-li... 45 1e-04
TC224881 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-li... 44 1e-04
TC215961 similar to UP|SYN1_ARATH (Q9SW96) Asparaginyl-tRNA synt... 40 0.003
TC220170 weakly similar to UP|SYD_SYNEL (Q8DJS8) Aspartyl-tRNA s... 40 0.004
TC220088 similar to GB|AAL84964.1|19310458|AY078967 AT4g17300/dl... 37 0.023
BQ298884 similar to SP|Q9SW96|SYN1_ Asparaginyl-tRNA synthetase ... 36 0.052
TC213142 similar to UP|Q8RW98 (Q8RW98) BRICK1, partial (95%) 30 2.8
TC220049 similar to UP|MSH3_ARATH (O65607) DNA mismatch repair p... 30 3.7
TC226386 homologue to UP|Q9SAW3 (Q9SAW3) P-type H+-ATPase, parti... 29 6.3
TC218262 28 8.3
TC208505 28 8.3
>TC227252 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase , partial
(59%)
Length = 1524
Score = 723 bits (1867), Expect = 0.0
Identities = 355/392 (90%), Positives = 370/392 (93%), Gaps = 6/392 (1%)
Frame = +2
Query: 159 MMPRQKSAAAAAADNA------WLPGKTRNPEAYTLKDQETRYRLRHLDLMLNTEVREIF 212
MMPRQKSAAAA DNA W+PG TRNPE Y LKDQETRYRLRHLDLMLN EVREIF
Sbjct: 2 MMPRQKSAAAA--DNANLKRNPWVPGSTRNPETYILKDQETRYRLRHLDLMLNPEVREIF 175
Query: 213 RTRSKIISYVRSFLDKLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYL 272
+TRSKIISY+R FLD LDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYL
Sbjct: 176 KTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYL 355
Query: 273 KKLVVGGLNRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYYDLMEITENMLSGMVYE 332
K+LVVGGL+RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDY DLM+ITE MLSGMV E
Sbjct: 356 KELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDITEQMLSGMVKE 535
Query: 333 LTKGSYKIKYHADGLDKDPIEIDFTPPFRRIDMIEGLEEMAGLSIPKDLTSAEANQYLRD 392
LTKGSYKIKYHADG+DK+PIEIDFTPPFRRIDMI+ LE+MAGLSIPKDL+S EANQYL+D
Sbjct: 536 LTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIDELEKMAGLSIPKDLSSEEANQYLKD 715
Query: 393 ACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTER 452
ACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHR+KPGLTER
Sbjct: 716 ACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTER 895
Query: 453 FELFINKHELANAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTA 512
FELF+NKHEL NAYTELNDPVVQRQRFA+QLKDRQSGDDEAMA DETFCTALEYGLPPT
Sbjct: 896 FELFVNKHELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMAFDETFCTALEYGLPPTG 1075
Query: 513 GWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD 544
GWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD
Sbjct: 1076GWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD 1171
>TC207073 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, partial (52%)
Length = 1234
Score = 252 bits (644), Expect = 3e-67
Identities = 146/345 (42%), Positives = 208/345 (59%), Gaps = 24/345 (6%)
Frame = +2
Query: 223 RSFLDKLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKKLVVGGLNR 282
R +D L F+EVETP++ AGGA ARPF+T+HN L L++RIA EL+LK+++VGG +
Sbjct: 8 RRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEK 187
Query: 283 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYYDLMEITENMLSGMVYELTKGSYKIKY 342
VYEIG+ FRNEGI HNPEFTT E Y AY DY +M + E +++ + G I Y
Sbjct: 188 VYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAV-HGKLTIDY 364
Query: 343 HADGLDKDPIEIDFTPPFRRIDMIEGLEEMAGL---SIPKDLTSAE---ANQYLRDACLK 396
+EI P+RR M ++E AG+ + DL A+ + ++ K
Sbjct: 365 QG-------VEICLEKPWRRETMHNLVKETAGIDFNELANDLEVAKRVTLDTLGKNLDNK 523
Query: 397 YEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERFELF 456
+ ++ LL+++ F+E + PTF++++P +SPLAK HR GLTERFELF
Sbjct: 524 DKGSIEACQSVGHLLNEVFESFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELF 703
Query: 457 INKHELANAYTELNDPVVQRQRFADQLK-------------DRQSG---DDEA--MALDE 498
I EL NA++EL DP+ QR R DQ++ D++ G DD++ + LD+
Sbjct: 704 ICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRAAVSTNDDKKEGTEDDDDSYEVTLDD 883
Query: 499 TFCTALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQ 543
F TALEYG+PP +G GLGIDRL MLLT+S +I++V+ FP +K Q
Sbjct: 884 DFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIPFPVLKVQ 1018
>TC227253 similar to UP|Q9ZPI1 (Q9ZPI1) Lysyl-tRNA synthetase , partial
(19%)
Length = 525
Score = 229 bits (585), Expect = 2e-60
Identities = 117/168 (69%), Positives = 133/168 (78%), Gaps = 4/168 (2%)
Frame = +1
Query: 122 NVKRGDIVGITGFPGKSRKGELSIFPKTFVVLSHCLHMMPRQKSAAAA----AADNAWLP 177
+VKRGDIVGITGFP KS+KGELSIFPKTFV++SHCLHMMPRQKSAAAA N W+P
Sbjct: 7 DVKRGDIVGITGFPRKSKKGELSIFPKTFVLMSHCLHMMPRQKSAAAADNANLKKNPWVP 186
Query: 178 GKTRNPEAYTLKDQETRYRLRHLDLMLNTEVREIFRTRSKIISYVRSFLDKLDFLEVETP 237
TRNPE Y LKDQETRYRLRHLDLMLN EVREIF+TRSKII Y+R D L FLE +TP
Sbjct: 187 RSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIICYIRRSHDDLHFLEDKTP 366
Query: 238 MMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKKLVVGGLNRVYE 285
MMN+IAGGAA R FVTHHND N+R+ ++ AP+L + GL R+ E
Sbjct: 367 MMNIIAGGAAPRAFVTHHNDRNIRILIKSAPKLDRSEKEAEGLERLSE 510
>TC227254 homologue to UP|Q9FEL1 (Q9FEL1) Lysyl-tRNA synthetase (Fragment),
partial (41%)
Length = 448
Score = 144 bits (364), Expect = 8e-35
Identities = 70/74 (94%), Positives = 72/74 (96%)
Frame = +2
Query: 475 QRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEV 534
QRQRFA+QLKDRQSGDDEAMALDETFCTALEYGLPPT GWGLGIDRLTMLLTDSQNIKEV
Sbjct: 2 QRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEV 181
Query: 535 LLFPAMKPQDVVSQ 548
LLFPAMKPQD V+Q
Sbjct: 182 LLFPAMKPQD*VNQ 223
>BI424545 weakly similar to GP|4325324|gb|A lysyl-tRNA synthetase; LysRS
{Arabidopsis thaliana}, partial (15%)
Length = 412
Score = 127 bits (320), Expect = 1e-29
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = +3
Query: 1 MRSAQENRPAAADEEDMDPTQYLENRLKYLSTEKEEGRNPYPHKFSATMTIKQYIKEYEG 60
M+ A++N+ A ADE+DMDPTQYLENRLKYL+ +K EG NPYPHKF TM++ QYIKEY G
Sbjct: 168 MQKAKDNKSAPADEDDMDPTQYLENRLKYLAVQKAEGNNPYPHKFFVTMSLDQYIKEYGG 347
Query: 61 LSDGQHLDDVSVSLTGKIMHK 81
LS+GQHL+DVSVS+ G+IMHK
Sbjct: 348 LSNGQHLEDVSVSMAGRIMHK 410
>BI942627 homologue to GP|28851946|gb lysyl-tRNA synthetase {Pseudomonas
syringae pv. tomato str. DC3000}, partial (27%)
Length = 402
Score = 127 bits (319), Expect = 1e-29
Identities = 65/127 (51%), Positives = 90/127 (70%)
Frame = +2
Query: 410 LLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRTKPGLTERFELFINKHELANAYTEL 469
+ ++LV H LE+ P FI +P +SPLA+ + P +T+RFELFI E+ANAY+EL
Sbjct: 32 IFEELVEHKLEQ----PHFITEYPFEVSPLARRNDENPNVTDRFELFIGGREIANAYSEL 199
Query: 470 NDPVVQRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMLLTDSQ 529
ND Q +RF Q+ ++ +GDDEAM D F ALEYG+PPTAG G+GIDRL MLLT++
Sbjct: 200 NDAEDQAERFQAQVAEKDAGDDEAMHYDADFVRALEYGMPPTAGEGIGIDRLVMLLTNAP 379
Query: 530 NIKEVLL 536
+I++V+L
Sbjct: 380 SIRDVIL 400
>TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-like protein,
partial (49%)
Length = 1255
Score = 72.8 bits (177), Expect = 4e-13
Identities = 72/280 (25%), Positives = 121/280 (42%), Gaps = 8/280 (2%)
Frame = +2
Query: 64 GQHLDDVSVSLTGKIMHKRSSGAKLVFYDLHDDGFKVQVMADASKSDLNEAGFDKVHSNV 123
G L++ SV + G+ R G K+ F + ++GF VQ + A + D A K + +
Sbjct: 326 GGALENNSVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQA-QPDTVSAQMVKFAAAL 502
Query: 124 KRGDIVGITGF------PGKSRKGELSIFPKTFVVLSHCLHMMPRQKSAAAAAADNAWLP 177
R IV + G P K ++ I + +S + +P AA + +
Sbjct: 503 SRESIVDVEGVVSVPTAPIKGATQQVEIQVRKLYCVSRAVPTLPINLEDAARS--EVEIE 676
Query: 178 GKTRNPEAYTLKDQETRYRLRHLDLMLNTEVREIFRTRSKIISYVRSFLDKLDFLEVETP 237
+ E +Q+TR R LD+ + IFR +S++ + R FL F E+ TP
Sbjct: 677 KALQAGEQLVRVNQDTRLNFRVLDVRTPAN-QGIFRIQSQVGNAFRQFLVSQGFCEIHTP 853
Query: 238 MMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKKLVVGGLNRVYEIGKQFRNE-GID 296
+IAG + V + + +P+L+ + + G RV+EIG FR E
Sbjct: 854 --KLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSYT 1027
Query: 297 LTHNPEFTTCEFYMAY-KDYYDLMEITENMLSGMVYELTK 335
H EFT + M K Y+++M+I + + M L +
Sbjct: 1028HRHLCEFTGLDVEMEIKKHYFEVMDIVDRLFVAMFDSLNQ 1147
>TC210702 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, partial (20%)
Length = 623
Score = 47.0 bits (110), Expect = 2e-05
Identities = 33/107 (30%), Positives = 57/107 (52%), Gaps = 2/107 (1%)
Frame = +3
Query: 26 RLKYLSTEKEEGRNPYPHKFSATMTIKQYIKEYEGLSDGQ--HLDDVSVSLTGKIMHKRS 83
RLK + + +G +PY ++++ T Q Y L +G+ + ++ VS+ G+I +R+
Sbjct: 285 RLKKVEELRSKGLDPYAYEWNKTHGANQLQDIYRDLGNGEEKNSENDHVSVAGRIAARRA 464
Query: 84 SGAKLVFYDLHDDGFKVQVMADASKSDLNEAGFDKVHSNVKRGDIVG 130
G KL F L DD +Q+ D K L F++ ++V GDI+G
Sbjct: 465 FG-KLAFLTLRDDSGTIQLYCD--KERLIGDQFEQSKAHVDIGDIIG 596
>TC224888 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-like protein,
partial (37%)
Length = 941
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/117 (26%), Positives = 52/117 (43%), Gaps = 4/117 (3%)
Frame = +2
Query: 447 PGLTERFELFINKHELANAYTELNDPVVQRQRFADQLKDRQSGDDEAMALD----ETFCT 502
P + F++FI E+ + ++ P QR A A +D T+
Sbjct: 350 PAYSNSFDVFIRGEEIISGAQRVHVPEFLEQRAA------------ACGIDVKTISTYID 493
Query: 503 ALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQDVVSQLNHLQVCSASS 559
+ YG PP G+G+G++R+ ML NI++ LFP P + NH+ + S+
Sbjct: 494 SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFP-RDPLRIAP**NHIPTVNCSN 661
>TC225015 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-like protein,
partial (39%)
Length = 834
Score = 44.7 bits (104), Expect = 1e-04
Identities = 30/117 (25%), Positives = 52/117 (43%), Gaps = 4/117 (3%)
Frame = +2
Query: 447 PGLTERFELFINKHELANAYTELNDPVVQRQRFADQLKDRQSGDDEAMALD----ETFCT 502
P + F++FI E+ + ++ P QR A A +D ++
Sbjct: 215 PAYSISFDVFIRGEEIISGAQRVHVPEFLEQRAA------------ACGIDVKTISSYID 358
Query: 503 ALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQDVVSQLNHLQVCSASS 559
+ YG PP G+G+G++R+ ML NI++ LFP P + NH+ + S+
Sbjct: 359 SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFP-RDPLRIAP*ENHIPTVNCSN 526
>TC224881 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-like protein,
partial (42%)
Length = 547
Score = 44.3 bits (103), Expect = 1e-04
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +1
Query: 447 PGLTERFELFINKHELANAYTELNDPVVQRQRFADQLKDRQSGDDEAMALD----ETFCT 502
P + F++FI E+ + ++ P QR A A +D ++
Sbjct: 256 PAYSNSFDVFIRGEEIISGAQRVHVPEFLEQRAA------------ACGIDVKTISSYID 399
Query: 503 ALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFP 538
+ YG PP G+G+G++R+ ML NI++ LFP
Sbjct: 400 SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFP 507
>TC215961 similar to UP|SYN1_ARATH (Q9SW96) Asparaginyl-tRNA synthetase,
cytoplasmic 1 (Asparagine--tRNA ligase 1) (AsnRS 1) ,
partial (49%)
Length = 1349
Score = 40.0 bits (92), Expect = 0.003
Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 12/288 (4%)
Frame = +2
Query: 263 FMRIAPELYLKKLVVGGLNRVYEIGKQFRNEGIDLT-HNPEFTTCEFYMAYKDYYDLMEI 321
F+ ++ +L ++ L+ VY G FR E + H EF E +A+ + D M
Sbjct: 92 FLTVSGQLQVESYACA-LSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFAELKDDMNC 268
Query: 322 TENMLSGMVYELTKGSYK-IKYHADGLDK---DPIEIDFTPPFRRIDMIEGLEEMAGLSI 377
E + M L + +++ AD DK D +++ + PF R+ E +E
Sbjct: 269 AEAYVKFMCQWLLDNCLEDMEFMADKFDKGCIDRLKLVASTPFIRVTYTEAVEI------ 430
Query: 378 PKDLTSAEANQYLRDACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMS 437
L A N + +K+ I L + + E P + N+P+ +
Sbjct: 431 ---LEDAVKNGKKFENEVKWGID---------LASEHERYLTEVKFQKPVIVYNYPKDI- 571
Query: 438 PLAKWHRTKPGLTERFELFINKHELANAYTELNDPVV-------QRQRFADQLKDRQSGD 490
+ F + +N A ++ P V QR+ D ++ R
Sbjct: 572 -------------KAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIQTRIKEM 712
Query: 491 DEAMALDETFCTALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFP 538
+ E + YG AG+GLG +R+ + T +NI++V+ FP
Sbjct: 713 GLPVEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGLENIRDVIPFP 856
>TC220170 weakly similar to UP|SYD_SYNEL (Q8DJS8) Aspartyl-tRNA synthetase
(Aspartate--tRNA ligase) (AspRS) , partial (32%)
Length = 939
Score = 39.7 bits (91), Expect = 0.004
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 503 ALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFP 538
AL+ G PP G G+DRL MLL + +I++V+ FP
Sbjct: 576 ALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFP 683
>TC220088 similar to GB|AAL84964.1|19310458|AY078967 AT4g17300/dl4685w
{Arabidopsis thaliana;} , partial (29%)
Length = 744
Score = 37.0 bits (84), Expect = 0.023
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 506 YGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFP 538
YG P AG+GLG +RL T NI++V+ FP
Sbjct: 396 YGSVPHAGFGLGFERLVQFATGMDNIRDVIPFP 494
>BQ298884 similar to SP|Q9SW96|SYN1_ Asparaginyl-tRNA synthetase cytoplasmic
1 (EC 6.1.1.22) (Asparagine-- tRNA ligase 1) (AsnRS 1).,
partial (12%)
Length = 402
Score = 35.8 bits (81), Expect = 0.052
Identities = 19/64 (29%), Positives = 33/64 (50%)
Frame = -1
Query: 475 QRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEV 534
QR+ D ++ R + E + YG AG+GLG +R+ + +T +NI++V
Sbjct: 399 QREERCDVIQTRIKEMGLPIEPYEWYLDLRRYGTVKHAGFGLGFERMILFVTGLENIRDV 220
Query: 535 LLFP 538
+ FP
Sbjct: 219 IPFP 208
>TC213142 similar to UP|Q8RW98 (Q8RW98) BRICK1, partial (95%)
Length = 534
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 190 DQETRYRLRHLDLMLNTEVREIFRTRSKIISYVRSFLDKLDFLEVETPMMNMIAGGAAAR 249
D E R + H+ L ++ + + + S + S +KLD LE ++ + G A+A
Sbjct: 141 DWENREFISHISLNVHRLFDFLVQFEATTKSKLASLNEKLDVLERRLELLEVQVGNASAN 320
Query: 250 PFVTHHNDL 258
PF H +L
Sbjct: 321 PFSFCHLNL 347
>TC220049 similar to UP|MSH3_ARATH (O65607) DNA mismatch repair protein MSH3
(AtMsh3), partial (19%)
Length = 1267
Score = 29.6 bits (65), Expect = 3.7
Identities = 23/68 (33%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 258 LNMRLFMRIAPELYLKKLVVGGLNRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYY- 316
+N R+ R EL L LV+G + +Q + +D H EF MAYKD+Y
Sbjct: 785 VNSRIHGRSTKELLLDTLVIG------QEKEQLMAQSLDRPHK------EFDMAYKDFYL 928
Query: 317 DLMEITEN 324
+L TE+
Sbjct: 929 NLKAATED 952
>TC226386 homologue to UP|Q9SAW3 (Q9SAW3) P-type H+-ATPase, partial (33%)
Length = 1352
Score = 28.9 bits (63), Expect = 6.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 394 CLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMS 437
C K + PP +TT R KL G L E C++ NH ++++
Sbjct: 654 C*KTRLPSPPRKTTVRRRGKLNGLMLREPCMD----FNHQKLLA 773
>TC218262
Length = 987
Score = 28.5 bits (62), Expect = 8.3
Identities = 28/99 (28%), Positives = 41/99 (41%)
Frame = +3
Query: 27 LKYLSTEKEEGRNPYPHKFSATMTIKQYIKEYEGLSDGQHLDDVSVSLTGKIMHKRSSGA 86
+K S K G Y S T T+ Y DG++ +D S+ ++
Sbjct: 369 IKGYSLAKGMGAGKYI--MSDTFTVGGYDWAIYFYPDGKNPEDNSMYVS----------- 509
Query: 87 KLVFYDLHDDGFKVQVMADASKSDLNEAGFDKVHSNVKR 125
VF L DG V+ + + D +E G DKVHS+ R
Sbjct: 510 --VFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDR 620
>TC208505
Length = 519
Score = 28.5 bits (62), Expect = 8.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 297 LTHNPEFTTCEFYMAY 312
LTH+P+ +TC+FY Y
Sbjct: 404 LTHDPQMSTCDFYSPY 357
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,903,133
Number of Sequences: 63676
Number of extensions: 270711
Number of successful extensions: 1196
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of query: 560
length of database: 12,639,632
effective HSP length: 102
effective length of query: 458
effective length of database: 6,144,680
effective search space: 2814263440
effective search space used: 2814263440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC148970.12