BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148970.11 + phase: 0
(382 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA820303 71 9e-13
BQ576456 68 8e-12
AI495080 59 5e-09
TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%) 49 3e-06
TC234144 37 0.011
TC211858 35 0.056
BF071225 weakly similar to PIR|D96521|D96 protein F21D18.16 [imp... 32 0.48
TC216757 similar to PIR|T05768|T05768 subtilisin-like proteinase... 30 1.4
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat... 30 2.4
NP005424 cytochrome oxidase subunit II (AA 1-260) 30 2.4
BG881451 weakly similar to PIR|D96521|D96 protein F21D18.16 [imp... 30 2.4
CO979307 30 2.4
TC211545 weakly similar to UP|Q7XHQ1 (Q7XHQ1) Calcineurin-like p... 29 4.0
TC216067 weakly similar to UP|RH2A_ARATH (Q9ZT50) RHA2a protein ... 28 5.3
TC229233 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g1... 28 5.3
TC216904 UP|P93166 (P93166) SCOF-1, complete 28 6.9
TC224671 similar to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, p... 28 6.9
TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported... 28 9.0
TC220808 weakly similar to UP|Q9SK32 (Q9SK32) Expressed protein,... 28 9.0
>CA820303
Length = 421
Score = 70.9 bits (172), Expect = 9e-13
Identities = 44/116 (37%), Positives = 59/116 (49%)
Frame = -1
Query: 174 LTLDDVCWRPYEEHREIQDFEEVFWYSGWIMCGVRRVYRHLSERVLRQYGYVQTIPRHPT 233
L + DVCW PY EHRE+QDF YSG + G VY + SERV+RQ+GY QTIP
Sbjct: 376 LRIPDVCWIPYGEHREVQDFHVRSCYSGLLCWGPVVVY-YRSERVVRQFGYTQTIPASTV 200
Query: 234 DVRDLPPPSIVQMFVDFRTHTLKADARGEQAGEDTWRVADGYVLWYTRVSHPQILP 289
D + I ++ + H + A G + Y+ W+ R SHP + P
Sbjct: 199 D-SWVSYDDIHDRWMHYEDHIVPAGEVCVVPG----ACSSDYIDWFFRTSHPFMTP 47
>BQ576456
Length = 424
Score = 67.8 bits (164), Expect = 8e-12
Identities = 47/150 (31%), Positives = 67/150 (44%)
Frame = +1
Query: 4 GEMTVTLDDVACLTHLPIEGRMLDHGKKMPKHEGAALLMTYLGVAQHEAEKICNQEYGGY 63
GE+T+TLDD+ACL HLPI G L + + E LLM L V++ EA + + Y
Sbjct: 31 GELTITLDDMACLLHLPITG-ALHRFEPLGVDEAVLLLMELLEVSREEARAKIVRAHRAY 207
Query: 64 ISYPRLRDFYTSYLGRANVLAGTEDPEEVEELERVRTYCVRCYLLYLVRCLLFGDRSNKR 123
+ LR+ Y S R VR YL +LV C LF ++S
Sbjct: 208 VRLSWLREVYQSRC-----------------QARCWIVAVRAYLFHLVDCTLFANKSATH 336
Query: 124 IELIYLTTMADGYAGMRNYSWGAMTLAYLY 153
+ +++L D Y WG L ++Y
Sbjct: 337 VHVVHLKGF*D-LC*SGGYGWGVAALVHMY 423
>AI495080
Length = 407
Score = 58.5 bits (140), Expect = 5e-09
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = +2
Query: 174 LTLDDVCWRPYEEHREIQDFEEVFWYSGWIMCGVRRVYRHLSERVLRQYGYVQTIPRHPT 233
L + DVCW Y EHRE+QDF YSG + G+ VY + E+V+RQ+GY IP P
Sbjct: 185 LRISDVCWILYGEHREVQDFHVRSCYSGLLHWGLVAVY-YRPEKVVRQFGYTPAIPAPPV 361
Query: 234 D 234
D
Sbjct: 362 D 364
>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
Length = 746
Score = 49.3 bits (116), Expect = 3e-06
Identities = 45/153 (29%), Positives = 67/153 (43%)
Frame = -1
Query: 4 GEMTVTLDDVACLTHLPIEGRMLDHGKKMPKHEGAALLMTYLGVAQHEAEKICNQEYGGY 63
GE T+TL DV L L +G L + + A L LGV E E G
Sbjct: 422 GEATITLQDVLILLGLRTDGAPLIGSTNL---DWADLCEELLGVRPQEGEI-----EGSV 267
Query: 64 ISYPRLRDFYTSYLGRANVLAGTEDPEEVEELERVRTYCVRCYLLYLVRCLLFGDRSNKR 123
+ L Y N+ D VE+L+R +R ++L + ++F ++S+ R
Sbjct: 266 VKLSWL----AHYFSHINI-----DEGNVEQLQRF----IRAWILRFIGGVIFVNKSSSR 126
Query: 124 IELIYLTTMADGYAGMRNYSWGAMTLAYLYGEL 156
+ L YL + D + Y+WG LAYLY E+
Sbjct: 125 VSLRYLQFLRD-FE*CSTYAWGPAMLAYLYREM 30
>TC234144
Length = 468
Score = 37.4 bits (85), Expect = 0.011
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +3
Query: 170 SVTLLTLDDVCWRPYEEHREIQDFEEVFWYSGWIMCG 206
++ +L D+ W PY HRE + F ++ +SG+I CG
Sbjct: 12 ALDML*TKDILWMPYTVHREHRPFHDISLFSGYIRCG 122
>TC211858
Length = 524
Score = 35.0 bits (79), Expect = 0.056
Identities = 19/57 (33%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Frame = -1
Query: 124 IELIYLTTMAD-GYAGMRNYSWGAMTLAYLYGELADACRPGHRVLGGSVTLLTLDDV 179
+ ++YL D G +G Y+WG L ++Y +L +A R R + G +TLL ++ V
Sbjct: 470 VHVVYLDAFRDLGQSG--GYAWGVAALVHMYNQLDEASRTTTRQIVGYLTLLQVNFV 306
Score = 30.4 bits (67), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 174 LTLDDVCWRPYEEHREIQDFE 194
LT+ DV W PY EHR ++ FE
Sbjct: 84 LTVIDVSWLPYTEHRGVRAFE 22
>BF071225 weakly similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (4%)
Length = 359
Score = 32.0 bits (71), Expect = 0.48
Identities = 23/79 (29%), Positives = 34/79 (42%), Gaps = 5/79 (6%)
Frame = +2
Query: 165 RVLGGSVTLLTLDDVCWRPYEEH-----REIQDFEEVFWYSGWIMCGVRRVYRHLSERVL 219
RV + L+ + W PY +I V W++ + V H +RVL
Sbjct: 44 RVFRRKLDLMKRHEFVWEPYTPTVMAALPQICVVGSVVWFAVVPLICFHVVEWHQPDRVL 223
Query: 220 RQYGYVQTIPRHPTDVRDL 238
RQYG Q IP P+ ++L
Sbjct: 224 RQYGLQQPIPGCPSQPQNL 280
>TC216757 similar to PIR|T05768|T05768 subtilisin-like proteinase -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(20%)
Length = 1126
Score = 30.4 bits (67), Expect = 1.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 356 REQIAPILTRRRAQRPRRRHHHQD 379
R IAP+L R R PRR H H D
Sbjct: 517 RHHIAPLLHRLREHEPRRLHRHAD 446
>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 429
Score = 29.6 bits (65), Expect = 2.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 4 GEMTVTLDDVACLTHLPIEGRML 26
GE T+TL DV+ L +P++GR L
Sbjct: 273 GEATITLQDVSVLLGIPVDGRPL 205
>NP005424 cytochrome oxidase subunit II (AA 1-260)
Length = 783
Score = 29.6 bits (65), Expect = 2.4
Identities = 28/109 (25%), Positives = 43/109 (38%), Gaps = 17/109 (15%)
Frame = +1
Query: 270 RVADGYVLWYTRVSHPQILP---PIPGDLLRPANEEQI---------IAEQWQR---YEA 314
R+ G + R P I+P IP L + +E + I QW R Y
Sbjct: 217 RIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYRTYEYSD 396
Query: 315 RNSPDTYDMV--SGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAP 361
NS D + S + D +LGQ ++ + + A TH+R + P
Sbjct: 397 YNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIVTP 543
>BG881451 weakly similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (1%)
Length = 421
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +3
Query: 178 DVCWRPYE--EHREIQDFEE---VFWYSGWIMCGVRRVYRHLSERVLRQYGYVQTIP 229
DV W PY + I ++ + + S ++ + RHL R LRQYG +Q+IP
Sbjct: 45 DVEWLPYRNMDSMVIPEYIKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIP 215
>CO979307
Length = 553
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -3
Query: 183 PYEEHREIQDFEEVFWYSGWIMCGVRRVYRHLSERVLRQYGYVQTIP 229
PYE ++ ++ F E G+ C + + +L +RV RQ+ +VQTIP
Sbjct: 188 PYE*NKLVRPFVEQTL*FGYFKCRID-MRSYLLKRVRRQFCHVQTIP 51
>TC211545 weakly similar to UP|Q7XHQ1 (Q7XHQ1) Calcineurin-like
phosphoesterase-like, partial (11%)
Length = 1127
Score = 28.9 bits (63), Expect = 4.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 213 HLSERVLRQYGYVQTIPRHP 232
H S+RVLRQ+G Q+IP P
Sbjct: 801 HQSDRVLRQFGMQQSIPEGP 860
>TC216067 weakly similar to UP|RH2A_ARATH (Q9ZT50) RHA2a protein (RING-H2
zinc finger protein), partial (37%)
Length = 733
Score = 28.5 bits (62), Expect = 5.3
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 7/63 (11%)
Frame = +2
Query: 321 YDMVSGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAPI-------LTRRRAQRPRR 373
+D SG A D+ L Q + P +F A + R Q P+ L RRR RPRR
Sbjct: 107 FDSASGVGA--DSHLRQ-----LPPLHAFRAFANPRSQPIPLRPDRRRALPRRRRIRPRR 265
Query: 374 RHH 376
+H
Sbjct: 266 TYH 274
>TC229233 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12470
{Arabidopsis thaliana;} , partial (13%)
Length = 520
Score = 28.5 bits (62), Expect = 5.3
Identities = 16/36 (44%), Positives = 18/36 (49%), Gaps = 6/36 (16%)
Frame = -3
Query: 349 FEAITHMREQIAPILTRRRA------QRPRRRHHHQ 378
FE TH R + +L RRR QRP R HHQ
Sbjct: 482 FEKATHHRRRNLAVLYRRRQVCRHALQRPPRLRHHQ 375
>TC216904 UP|P93166 (P93166) SCOF-1, complete
Length = 1114
Score = 28.1 bits (61), Expect = 6.9
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 2/70 (2%)
Frame = +1
Query: 310 QRYEARNSPDTYDMVSGAVAYADAQ-LGQEEVMSMTPQQSFEAITHMR-EQIAPILTRRR 367
+R+ R P + A A AD + Q ++ + +Q + R Q TRRR
Sbjct: 364 RRHHHRQQPPRQPSAATATATADTRSFHQAQLQMLRLRQELPLLPSARWTQGQSPETRRR 543
Query: 368 AQRPRRRHHH 377
+RP +HHH
Sbjct: 544 RRRPTPQHHH 573
>TC224671 similar to UP|Q8S8Z0 (Q8S8Z0) Protein phosphatase 2C, partial (87%)
Length = 1803
Score = 28.1 bits (61), Expect = 6.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 185 EEHREIQDFEE-VFWYSGWIMCGVRRVYRHLSERVLRQY 222
+E R I+D V W W + GV V R +R+L+QY
Sbjct: 999 DERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY 1115
>TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(65%)
Length = 619
Score = 27.7 bits (60), Expect = 9.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 209 RVYRHLSERVLRQYGYVQTIPRHPTDVRDLPPPSIVQMF 247
R+ RHL LR + + + RHP + PPP ++Q +
Sbjct: 88 RLRRHLRRPPLRSHLHPRPRRRHPLRLSPPPPPLLLQRY 204
>TC220808 weakly similar to UP|Q9SK32 (Q9SK32) Expressed protein, partial
(9%)
Length = 869
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 9/85 (10%)
Frame = +1
Query: 212 RHLSERVLRQYGYVQTIPRHPTDVRDLPPPS-IVQMFVDFRTHTLKADARGEQAGEDTWR 270
RHL +R LRQ+ QTIP+ DV S IV VD K D ++ E
Sbjct: 58 RHLPDRCLRQFAMHQTIPK---DVERWERKSRIVDHGVDLMG---KMDLALKEWSERWVH 219
Query: 271 VADG--------YVLWYTRVSHPQI 287
V +G Y+ WY +++ I
Sbjct: 220 VVEGGDIVDEGEYMQWYQKITRKYI 294
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,433,094
Number of Sequences: 63676
Number of extensions: 265517
Number of successful extensions: 1532
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of query: 382
length of database: 12,639,632
effective HSP length: 99
effective length of query: 283
effective length of database: 6,335,708
effective search space: 1793005364
effective search space used: 1793005364
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148970.11