Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148969.8 - phase: 0 
         (219 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209613 similar to PIR|A86383|A86383 76.4K protein kinase homol...    31  0.38
TC227513 weakly similar to UP|Q6J5M7 (Q6J5M7) Purple acid phosph...    28  4.3
TC208367 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {A...    28  4.3
TC217545 similar to UP|Q9ZUI6 (Q9ZUI6) T2K10.12 protein, partial...    27  5.6
BU550585 weakly similar to GP|8778807|gb| T4O12.12 {Arabidopsis ...    27  7.3
BU550422                                                               27  7.3
BM093602                                                               27  9.5
TC210959                                                               27  9.5
CO984097                                                               27  9.5

>TC209613 similar to PIR|A86383|A86383 76.4K protein kinase homolog F4F7.29 -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (13%)
          Length = 773

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = +1

Query: 83  VIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFP 135
           V ++ ++PCY + H +    SS  S+ H    QF     +D+AC+G++L ++P
Sbjct: 574 VFFELMNPCYWLEH*KRN--SSCLSKNH----QFFCYNLRDMACFGDSLFFYP 714


>TC227513 weakly similar to UP|Q6J5M7 (Q6J5M7) Purple acid phosphatase 1,
           partial (86%)
          Length = 1229

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 136 KGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDK 182
           K  I ++     N WV F S+ LN  N+D FF         Y   DK
Sbjct: 449 KAQISHVLRYRDNRWVCFRSYTLNSENVDFFFVDTTPFVDKYFIEDK 589


>TC208367 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Arabidopsis
           thaliana;} , partial (34%)
          Length = 1062

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 16/51 (31%), Positives = 21/51 (40%), Gaps = 8/51 (15%)
 Frame = +3

Query: 88  VHPCYTVFHEQTETFSSL--------WSEYHDDFRQFLHIYSQDVACYGEN 130
           VH     FH + E F           WS +   F  F+ +   DV CYG+N
Sbjct: 96  VHWGLPFFHRRNEGFLQRKTQRVLWRWSLHSIKFSLFISLCGSDVHCYGDN 248


>TC217545 similar to UP|Q9ZUI6 (Q9ZUI6) T2K10.12 protein, partial (36%)
          Length = 1597

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 12/35 (34%), Positives = 21/35 (59%)
 Frame = +1

Query: 27  SVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIH 61
           S++ C   Q +++DI  FLKT +K  +  YP + +
Sbjct: 784 SISNCI*EQLLEVDIQ-FLKTTRKPTNNSYPGYFY 885


>BU550585 weakly similar to GP|8778807|gb| T4O12.12 {Arabidopsis thaliana},
           partial (17%)
          Length = 630

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 79  DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDF 113
           D E V WDS HP  +V+       +SL  +Y D F
Sbjct: 255 DLEYVFWDSFHPTESVYR---RLIASLLGKYLDKF 160


>BU550422 
          Length = 672

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 86  DSVHPCYTVFHEQTETFSSLWSEYHDDF 113
           ++ HPCY++ H + E    LW++    F
Sbjct: 412 NTFHPCYSLEHHEEEGSHRLWAQTWQPF 495


>BM093602 
          Length = 416

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 67  MNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFS 103
           + AH    + M  G  +IW    PC   +H+    F+
Sbjct: 79  LEAHLNQYVVMDSGSDIIWVQCEPCTQCYHQSDPVFN 189


>TC210959 
          Length = 539

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 190 QVHHAVCDGFHVGRMLNEL 208
           Q+HH+ CD  +VG +LN L
Sbjct: 141 QIHHSPCDNPNVGTVLNVL 197


>CO984097 
          Length = 630

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 84  IWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQ 115
           + ++ HPCY++ H   E    +W++    F Q
Sbjct: 166 VMNTCHPCYSLKHHVGEGSHQVWAQTWQPFAQ 261


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.326    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,868
Number of Sequences: 63676
Number of extensions: 167487
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of query: 219
length of database: 12,639,632
effective HSP length: 93
effective length of query: 126
effective length of database: 6,717,764
effective search space: 846438264
effective search space used: 846438264
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)


Medicago: description of AC148969.8