
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148969.8 - phase: 0
(219 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209613 similar to PIR|A86383|A86383 76.4K protein kinase homol... 31 0.38
TC227513 weakly similar to UP|Q6J5M7 (Q6J5M7) Purple acid phosph... 28 4.3
TC208367 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {A... 28 4.3
TC217545 similar to UP|Q9ZUI6 (Q9ZUI6) T2K10.12 protein, partial... 27 5.6
BU550585 weakly similar to GP|8778807|gb| T4O12.12 {Arabidopsis ... 27 7.3
BU550422 27 7.3
BM093602 27 9.5
TC210959 27 9.5
CO984097 27 9.5
>TC209613 similar to PIR|A86383|A86383 76.4K protein kinase homolog F4F7.29 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(13%)
Length = 773
Score = 31.2 bits (69), Expect = 0.38
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 83 VIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFP 135
V ++ ++PCY + H + SS S+ H QF +D+AC+G++L ++P
Sbjct: 574 VFFELMNPCYWLEH*KRN--SSCLSKNH----QFFCYNLRDMACFGDSLFFYP 714
>TC227513 weakly similar to UP|Q6J5M7 (Q6J5M7) Purple acid phosphatase 1,
partial (86%)
Length = 1229
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 136 KGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDK 182
K I ++ N WV F S+ LN N+D FF Y DK
Sbjct: 449 KAQISHVLRYRDNRWVCFRSYTLNSENVDFFFVDTTPFVDKYFIEDK 589
>TC208367 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Arabidopsis
thaliana;} , partial (34%)
Length = 1062
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/51 (31%), Positives = 21/51 (40%), Gaps = 8/51 (15%)
Frame = +3
Query: 88 VHPCYTVFHEQTETFSSL--------WSEYHDDFRQFLHIYSQDVACYGEN 130
VH FH + E F WS + F F+ + DV CYG+N
Sbjct: 96 VHWGLPFFHRRNEGFLQRKTQRVLWRWSLHSIKFSLFISLCGSDVHCYGDN 248
>TC217545 similar to UP|Q9ZUI6 (Q9ZUI6) T2K10.12 protein, partial (36%)
Length = 1597
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/35 (34%), Positives = 21/35 (59%)
Frame = +1
Query: 27 SVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIH 61
S++ C Q +++DI FLKT +K + YP + +
Sbjct: 784 SISNCI*EQLLEVDIQ-FLKTTRKPTNNSYPGYFY 885
>BU550585 weakly similar to GP|8778807|gb| T4O12.12 {Arabidopsis thaliana},
partial (17%)
Length = 630
Score = 26.9 bits (58), Expect = 7.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 79 DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDF 113
D E V WDS HP +V+ +SL +Y D F
Sbjct: 255 DLEYVFWDSFHPTESVYR---RLIASLLGKYLDKF 160
>BU550422
Length = 672
Score = 26.9 bits (58), Expect = 7.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 86 DSVHPCYTVFHEQTETFSSLWSEYHDDF 113
++ HPCY++ H + E LW++ F
Sbjct: 412 NTFHPCYSLEHHEEEGSHRLWAQTWQPF 495
>BM093602
Length = 416
Score = 26.6 bits (57), Expect = 9.5
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +1
Query: 67 MNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFS 103
+ AH + M G +IW PC +H+ F+
Sbjct: 79 LEAHLNQYVVMDSGSDIIWVQCEPCTQCYHQSDPVFN 189
>TC210959
Length = 539
Score = 26.6 bits (57), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 190 QVHHAVCDGFHVGRMLNEL 208
Q+HH+ CD +VG +LN L
Sbjct: 141 QIHHSPCDNPNVGTVLNVL 197
>CO984097
Length = 630
Score = 26.6 bits (57), Expect = 9.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 84 IWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQ 115
+ ++ HPCY++ H E +W++ F Q
Sbjct: 166 VMNTCHPCYSLKHHVGEGSHQVWAQTWQPFAQ 261
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.137 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,868
Number of Sequences: 63676
Number of extensions: 167487
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of query: 219
length of database: 12,639,632
effective HSP length: 93
effective length of query: 126
effective length of database: 6,717,764
effective search space: 846438264
effective search space used: 846438264
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC148969.8