BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148819.6 - phase: 0
(156 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219020 similar to UP|SRB7_SCHPO (O94376) RNA polymerase II med... 36 0.009
BU760572 34 0.025
BU547982 weakly similar to GP|7672991|gb|A MADS-box transcriptio... 32 0.12
TC228567 31 0.21
TC217579 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (19%) 31 0.21
TC215079 similar to UP|Q6H730 (Q6H730) Ribosomal protein L12-lik... 30 0.47
TC230527 similar to UP|Q6V0J7 (Q6V0J7) Short vegetative phase pr... 30 0.47
TC223664 weakly similar to UP|Q945C5 (Q945C5) Origin recognition... 29 0.81
TC208480 29 0.81
TC210134 28 1.8
BG154884 28 2.3
TC209493 similar to UP|Q8VXU5 (Q8VXU5) AT3g53630/F4P12_330, part... 27 4.0
BI471596 27 4.0
TC207576 similar to UP|VATG_CITLI (Q9SP55) Vacuolar ATP synthase... 27 4.0
CO981142 27 5.2
AW164608 weakly similar to GP|9280691|gb F2E2.13 {Arabidopsis th... 27 5.2
CF921229 26 6.8
TC206494 weakly similar to GB|AAO42927.1|28416793|BT004681 At5g2... 26 6.8
BM886825 26 8.9
BI315593 weakly similar to GP|4454049|emb| 98b like protein {Ara... 26 8.9
>TC219020 similar to UP|SRB7_SCHPO (O94376) RNA polymerase II mediator complex
protein srb7, partial (14%)
Length = 1446
Score = 35.8 bits (81), Expect = 0.009
Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Frame = +2
Query: 17 EEYNEKIARLEAQVKESLHEKASYEATISQLHGDIAAHKNHMQILANRLDQVHFEVESKY 76
+E NEK+ LE Q+K L E+ + EA + HK ++ +L H E+
Sbjct: 1004 KELNEKLNTLEGQIK--LFEEHAREAVATS-----GTHKAELEQSLIKLK--HLEI---- 1144
Query: 77 SSEIRDLKDCLMAEQEEKNDLNRKMQLLEKELLLFKAKMVDQQQEMTSNW-QVETLKQKI 135
I +L++ + ++E LN + L +E+ +++K+ D Q+++++ + E +++
Sbjct: 1145 --VIEELQNKSLHHEKETAGLNEENSKLNQEIASYESKLSDLQEKLSAALVEKEETDKEL 1318
Query: 136 MKLRKENEVLKRKFS 150
+ L+ E L K S
Sbjct: 1319 LTLKDAMEKLGTKHS 1363
Score = 34.7 bits (78), Expect = 0.019
Identities = 31/149 (20%), Positives = 72/149 (47%), Gaps = 7/149 (4%)
Frame = +2
Query: 12 LKLLEEEYN---EKIARLEAQVKESLHEKASYEATISQLHGDIAAHKNHMQILANRLDQV 68
L++L ++ N +K+ E+ ++E+ E S++ + A + ++ + +++
Sbjct: 296 LEILRDDLNLTQDKLQSTESDLREA-------ELRESEIIEKLKASEENLVVRGRDIEET 454
Query: 69 ---HFEVESKYSSEIRDLKDCLMAEQEEKNDLNRKMQLLEKELLLFKAKMVDQQQEMTS- 124
H E++ + S RD + L E+ N+ + ++Q L +++ + + ++ ++ TS
Sbjct: 455 ATRHSELQLLHESLTRDSEQKLQEAIEKFNNKDSEVQSLLEKIKILEEQIAKAGEQSTSL 634
Query: 125 NWQVETLKQKIMKLRKENEVLKRKFSHIE 153
+ E K+ L ENE LKR+ E
Sbjct: 635 KNEFEESLSKLTSLESENEDLKRQILDAE 721
>BU760572
Length = 449
Score = 34.3 bits (77), Expect = 0.025
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Frame = +2
Query: 38 ASYEATISQLHGDIAA---HKNHMQILANRLDQVHFEVESKYSSEIRDLKDCLMAEQEEK 94
ASYE+ +S L ++A K L V E+ + +S+E++ L + + +EK
Sbjct: 167 ASYESKLSDLQEKLSAALVEKEETVKELLTLKDVIKELGTAHSAEVQTLNSQISSVGDEK 346
Query: 95 NDLNRKMQLLEKEL--LLF--KAKMVDQQQ 120
N LN Q L+KEL L+F + K+ +QQ+
Sbjct: 347 NMLNETNQNLKKELQSLIFDLEEKLKEQQK 436
>BU547982 weakly similar to GP|7672991|gb|A MADS-box transcription factor
{Canavalia lineata}, partial (34%)
Length = 624
Score = 32.0 bits (71), Expect = 0.12
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Frame = -2
Query: 26 LEAQVKESLHEKASYEAT-----ISQLHGDI--AAHKNHMQILANRL----DQVHFEVES 74
LE Q++ S K S E +S L GD N +Q L L D+V E+
Sbjct: 617 LELQLEASXSAKLSKEIADRTQELSWLKGDDLQGLGLNELQQLEKTLEIGLDRVTDIKEN 438
Query: 75 KYSSEIRDLKDCLMAEQEEKNDLNRKMQLLEKELLLFKAK---MVDQQQ 120
+ S+I +L+ + +EE L +K+ EKE +L KAK MVD +
Sbjct: 437 QIMSQISELQKKGILLEEENKHLTKKLAEKEKEAMLCKAKIPFMVDSDK 291
>TC228567
Length = 1531
Score = 31.2 bits (69), Expect = 0.21
Identities = 36/151 (23%), Positives = 66/151 (42%), Gaps = 8/151 (5%)
Frame = +2
Query: 12 LKLLEEEYNEKIARLEAQVKESLHEKASYEATISQLHGDIAAHKNHMQILANRLDQVHFE 71
LKL E+ E++ RL QV + K+ E+ S LHG A +M+ N
Sbjct: 194 LKLELEQV*EELQRLNEQVLSTRVLKSKLESASSLLHGLKAELTAYMESKVN-------- 349
Query: 72 VESKYSSEIRDLKDCLMAEQEEKNDLNR--------KMQLLEKELLLFKAKMVDQQQEMT 123
E Y + ++++ + ++ +D+NR K +L E++ +L K Q E
Sbjct: 350 -EEFYKEQKEEVEELKLNIEKATSDVNRLRVASVSLKSKLEEEKSVLASLK----QSEEK 514
Query: 124 SNWQVETLKQKIMKLRKENEVLKRKFSHIEE 154
++ V L+ ++ K R ++ K + E
Sbjct: 515 ASAAVVNLQAELEKSRSAIAFIQMKENEARE 607
>TC217579 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (19%)
Length = 1850
Score = 31.2 bits (69), Expect = 0.21
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = +3
Query: 18 EYNEKIARLEAQVKESLHEKASYEATISQLHGDIAAHKNHMQILANRLDQVHFEV---ES 74
E EKI A+++E + K+ + ++++ IAA K+ ++ILA + + + +V S
Sbjct: 114 ESREKIEFYRAKMQELVLYKSRCDNRLNEVIERIAADKHEVEILAKKYEDKYKQVGDLSS 293
Query: 75 KYSSEIRDLKDCLMAEQEEKNDLNRKMQLLEKE 107
K ++E +D QE+K +L + + +E++
Sbjct: 294 KLTTEEATFRDI----QEKKIELYQAIVKMEQD 380
>TC215079 similar to UP|Q6H730 (Q6H730) Ribosomal protein L12-like protein,
partial (9%)
Length = 711
Score = 30.0 bits (66), Expect = 0.47
Identities = 21/119 (17%), Positives = 49/119 (40%)
Frame = +2
Query: 37 KASYEATISQLHGDIAAHKNHMQILANRLDQVHFEVESKYSSEIRDLKDCLMAEQEEKND 96
+ Y + ++ + M+I R D+ E + E + LK + ++ D
Sbjct: 77 RREYALQVKEVRKEYIREMEVMKIEKERKDEARREALRVANEERKKLKAQAAQLRAQERD 256
Query: 97 LNRKMQLLEKELLLFKAKMVDQQQEMTSNWQVETLKQKIMKLRKENEVLKRKFSHIEEG 155
+ R+ F+ ++ ++ E NW+++ + K K+ + ++ + IEEG
Sbjct: 257 IERQQ---------FRETLLKERAEKLENWKMKVKMHEEKKAEKKEFLHRQSSAWIEEG 406
>TC230527 similar to UP|Q6V0J7 (Q6V0J7) Short vegetative phase protein,
partial (60%)
Length = 588
Score = 30.0 bits (66), Expect = 0.47
Identities = 31/112 (27%), Positives = 56/112 (49%), Gaps = 9/112 (8%)
Frame = +3
Query: 54 HKNHMQILANRLDQVHFEVE-------SKYSSEIRDLKDCL-MAEQEEKNDLN-RKMQLL 104
H H + LA R++Q E++ S+ S E+ + L E+ LN ++Q L
Sbjct: 33 HHLHSKNLA-RMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQL 209
Query: 105 EKELLLFKAKMVDQQQEMTSNWQVETLKQKIMKLRKENEVLKRKFSHIEEGK 156
E L ++++++ E + ++ L++K M L +ENE LKR + I G+
Sbjct: 210 EMSLETGLGRVIEKKGEKIMS-EIADLQRKGMLLMEENERLKRHVAGIINGQ 362
>TC223664 weakly similar to UP|Q945C5 (Q945C5) Origin recognition complex
subunit 4, partial (53%)
Length = 918
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/140 (20%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Frame = +2
Query: 18 EYNEKIARL--EAQVKESLHEKASYEATISQLHGDIAAHKNHMQILANRLDQVHFEVESK 75
E+N K+ + + + KE+L++ + ++++ L + +HM + L + +FE+
Sbjct: 260 EFNRKVQNIIEDRRFKETLNKYLNVDSSVKHLLRFLFCAVSHMDLQTGFLSRENFEI--A 433
Query: 76 YSSEIRDLKDCLMAEQEEKNDLNRKMQLLEKELLLFKAKMVDQQQEMTSNWQVETLKQKI 135
++S +++ K + R +LE ++L+ ++ ++Q + + V +K+ I
Sbjct: 434 FTS----------IQRQPKLECLRNCSILELQILVCMKRLEVKEQSLCNFNSV--MKEYI 577
Query: 136 MKLRKE---NEVLKRKFSHI 152
L E V R F H+
Sbjct: 578 STLTSERYARHVCLRAFEHL 637
>TC208480
Length = 1576
Score = 29.3 bits (64), Expect = 0.81
Identities = 34/159 (21%), Positives = 67/159 (41%), Gaps = 6/159 (3%)
Frame = +3
Query: 1 MTFSEQGHRRALKLLEEE---YNEKIARLEAQVKESLHEKASY---EATISQLHGDIAAH 54
++ + R + LLE E ++EK LE ++ + E S EAT+ + +
Sbjct: 447 LSLKAESLERKINLLENELSSFSEKEVGLETRIAQLQSENNSLLQKEATLVERTNQLLNE 626
Query: 55 KNHMQILANRLDQVHFEVESKYSSEIRDLKDCLMAEQEEKNDLNRKMQLLEKELLLFKAK 114
K + + L+Q + +ES +S ++ + +E ++LN + +L+
Sbjct: 627 KAVLSLKGESLEQKIYLLESDLNSLVKKEN----STKETISNLNGNIAVLQA-------- 770
Query: 115 MVDQQQEMTSNWQVETLKQKIMKLRKENEVLKRKFSHIE 153
QVE L++ L EN+ L+ K S ++
Sbjct: 771 ------------QVEELEESRNNLFLENQQLREKVSSLQ 851
>TC210134
Length = 738
Score = 28.1 bits (61), Expect = 1.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 3 FSEQ---GHRRALKLLEEEYNEKIARLEAQVKESLHEKASYEATISQLHGDI 51
F+EQ R A ++L+E+Y E A L K ++ ++ EAT+ G +
Sbjct: 250 FAEQDAAAQRYAAQVLQEKYEEATAALAEMEKRAVMAESMLEATLQYQSGQV 405
>BG154884
Length = 475
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/49 (32%), Positives = 27/49 (54%)
Frame = +3
Query: 4 SEQGHRRALKLLEEEYNEKIARLEAQVKESLHEKASYEATISQLHGDIA 52
S++ H LKLLEE E RLE +++++ EK + E ++ +A
Sbjct: 279 SKRHHEEELKLLEE---ETARRLEEAIRKNVEEKLNTEEVKLEIERRVA 416
>TC209493 similar to UP|Q8VXU5 (Q8VXU5) AT3g53630/F4P12_330, partial (46%)
Length = 1023
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 134 KIMKLRKENEVLKRKFSHI 152
KI KL KEN +LK+ SHI
Sbjct: 898 KIKKLSKENVLLKKSMSHI 842
>BI471596
Length = 407
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 85 DCLMAEQEEKNDLNRKMQLLEK 106
DCL+ Q EKND+ + Q+L K
Sbjct: 136 DCLVTFQYEKNDVKKSSQILYK 71
>TC207576 similar to UP|VATG_CITLI (Q9SP55) Vacuolar ATP synthase subunit G
(V-ATPase G subunit) (Vacuolar proton pump G subunit) ,
complete
Length = 742
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 8/59 (13%)
Frame = +2
Query: 9 RRALKLLEEEYNEKIARLEAQVKESLHEKASYEA--------TISQLHGDIAAHKNHMQ 59
+ A +++ NEK+ARL+ +E+ E A Y A +SQ GD A+ ++
Sbjct: 143 QEAQRIVNAAKNEKLARLKQAKEEAEKEIAEYRAQLEYEFQKKVSQSSGDSGANVKRLE 319
>CO981142
Length = 736
Score = 26.6 bits (57), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +3
Query: 57 HMQILANRLDQVHFEVESKYSSEIRDL 83
H IL N LD + + + + SEIRDL
Sbjct: 39 HFSILINILDSIQTDGINSFDSEIRDL 119
>AW164608 weakly similar to GP|9280691|gb F2E2.13 {Arabidopsis thaliana},
partial (5%)
Length = 406
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 37 KASYEATISQLHGDIAAHKNHMQILANRLDQVHFEVESKYSSEIRDLKDCLMAEQEEKND 96
K YE+ + +L ++ K H + + +L E E++ SE +K +
Sbjct: 91 KEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETENRKKSEASQIK--------INEE 246
Query: 97 LNRKMQLLEKEL 108
L K+ LE EL
Sbjct: 247 LGMKILELEAEL 282
>CF921229
Length = 680
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/82 (17%), Positives = 38/82 (46%)
Frame = -3
Query: 13 KLLEEEYNEKIARLEAQVKESLHEKASYEATISQLHGDIAAHKNHMQILANRLDQVHFEV 72
++ EE+ ++ + + + + EK E T + ++ K ++++ + + E
Sbjct: 558 EVTEEKKEVEVTEEKKEAEVIVEEKKEVEVTEEKKEVEVTEGKKEVEVIEEKKETEVTEE 379
Query: 73 ESKYSSEIRDLKDCLMAEQEEK 94
+ + E+R+ K ++EEK
Sbjct: 378 KKEVEVEVREEKKESEVKEEEK 313
>TC206494 weakly similar to GB|AAO42927.1|28416793|BT004681 At5g24660
{Arabidopsis thaliana;} , partial (59%)
Length = 671
Score = 26.2 bits (56), Expect = 6.8
Identities = 17/61 (27%), Positives = 30/61 (48%)
Frame = +2
Query: 94 KNDLNRKMQLLEKELLLFKAKMVDQQQEMTSNWQVETLKQKIMKLRKENEVLKRKFSHIE 153
+N+L ++ + LEKEL K + ++E+ S W+ +LR E +R S +
Sbjct: 182 ENELKKRNEELEKELRESKEREEQMKRELQSAWE---------RLRVAEEAEERLCSQLG 334
Query: 154 E 154
E
Sbjct: 335 E 337
>BM886825
Length = 421
Score = 25.8 bits (55), Expect = 8.9
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 96 DLNRKMQLLEKELLLFKAKMVDQQQEMTSNWQVETLKQKIMKLRKENEVLKRKFSHIE 153
+L+ + ++K+ L K K+ +Q+ M ++K+ KL K + KRK H+E
Sbjct: 232 ELSAAAESIQKQKELKKQKLKIKQERMR--------EEKLAKLEKLKKKQKRKAKHLE 381
>BI315593 weakly similar to GP|4454049|emb| 98b like protein {Arabidopsis
thaliana}, partial (13%)
Length = 421
Score = 25.8 bits (55), Expect = 8.9
Identities = 16/68 (23%), Positives = 37/68 (53%), Gaps = 3/68 (4%)
Frame = +1
Query: 90 EQEEKNDLNRKMQLLEKELLLFKAKMVDQQQEMTSNWQVETLKQKIMKLR---KENEVLK 146
+Q+ K + + +LLE + +L + ++ ++ E + E LKQK +L+ +E E L+
Sbjct: 214 KQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKLKDEALKQKDEELKNRGREQEKLQ 393
Query: 147 RKFSHIEE 154
+ +++
Sbjct: 394 SELKKLQK 417
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.127 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,875,698
Number of Sequences: 63676
Number of extensions: 44778
Number of successful extensions: 223
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of query: 156
length of database: 12,639,632
effective HSP length: 89
effective length of query: 67
effective length of database: 6,972,468
effective search space: 467155356
effective search space used: 467155356
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148819.6