BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148775.2 + phase: 0 /pseudo
(267 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216778 UP|O24431 (O24431) Calmodulin-like domain protein kinas... 30 1.1
TC204650 UP|Q43446 (Q43446) Lipoxygenase L-5 , complete 29 1.9
TC220900 similar to UP|Q9ZTM6 (Q9ZTM6) PGPD14, partial (38%) 28 3.3
TC203477 homologue to UP|RS1A_ARATH (P42798) 40S ribosomal prote... 28 4.3
TC203305 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete 28 4.3
TC203272 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete 28 4.3
TC203622 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete 28 4.3
TC203368 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete 28 4.3
TC203274 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete 28 4.3
AW458144 similar to GP|12407660|gb| eukaryotic initiation factor... 28 5.6
AI938843 similar to GP|6013211|gb| rod outer segment membrane gu... 28 5.6
TC232082 homologue to UP|Q9ZCN7 (Q9ZCN7) 4-HYDROXYBENZOATE OCTAP... 27 7.3
TC206477 similar to UP|SUCB_ARATH (O82662) Succinyl-CoA ligase [... 27 7.3
AI736630 27 9.6
>TC216778 UP|O24431 (O24431) Calmodulin-like domain protein kinase isoenzyme
gamma , complete
Length = 2377
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = +1
Query: 195 EGKFSQEFIDRCEYGGVMIVRSLCGVEL*SWSATVYLY 232
EGK ++ + Y ++R CG E+ WSA V LY
Sbjct: 1153 EGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILY 1266
>TC204650 UP|Q43446 (Q43446) Lipoxygenase L-5 , complete
Length = 2946
Score = 29.3 bits (64), Expect = 1.9
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +1
Query: 203 IDRCEYGGVMIVRSLCGVEL*SWSATVYLY 232
+++CE G+ + LC ++L WS +YLY
Sbjct: 2620 LNKCEIEGI*FLHQLCMIKLCIWSG*MYLY 2709
>TC220900 similar to UP|Q9ZTM6 (Q9ZTM6) PGPD14, partial (38%)
Length = 765
Score = 28.5 bits (62), Expect = 3.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 234 SSYWWKLQSLVLMVPFPRQHS*KIIWL 260
SS W KL L+ P P + K++W+
Sbjct: 240 SSVWEKLDELIASTPMPETYKNKMVWI 320
>TC203477 homologue to UP|RS1A_ARATH (P42798) 40S ribosomal protein S15a,
partial (77%)
Length = 827
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = +1
Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
Y GEF+YV DH GK E R GV+ R GV E+ W+A
Sbjct: 295 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 432
>TC203305 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete
Length = 748
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = +1
Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
Y GEF+YV DH GK E R GV+ R GV E+ W+A
Sbjct: 172 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 309
>TC203272 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete
Length = 599
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = +1
Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
Y GEF+YV DH GK E R GV+ R GV E+ W+A
Sbjct: 160 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 297
>TC203622 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete
Length = 675
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = +3
Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
Y GEF+YV DH GK E R GV+ R GV E+ W+A
Sbjct: 201 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 338
>TC203368 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete
Length = 652
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = +2
Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
Y GEF+YV DH GK E R GV+ R GV E+ W+A
Sbjct: 200 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 337
>TC203274 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete
Length = 1174
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = +1
Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
Y GEF+YV DH GK E R GV+ R GV E+ W+A
Sbjct: 670 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 807
>AW458144 similar to GP|12407660|gb| eukaryotic initiation factor 3H1 subunit
{Arabidopsis thaliana}, partial (11%)
Length = 315
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = -3
Query: 203 IDRCEYGGVMIVRSLCGVEL*SWSATVYLY 232
+++CE G+ + LC +L WS +YLY
Sbjct: 112 LNKCEIEGI*FLHQLCMFKLCIWSG*MYLY 23
>AI938843 similar to GP|6013211|gb| rod outer segment membrane guanylate
cyclase type 2 {Rana pipiens}, partial (1%)
Length = 407
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +2
Query: 203 IDRCEYGGVMIVRSLCGVEL*SWSATVYLY 232
+++CE G+ + LC +L WS +YLY
Sbjct: 71 LNKCEIEGI*FLHQLCMFKLCIWSG*MYLY 160
>TC232082 homologue to UP|Q9ZCN7 (Q9ZCN7) 4-HYDROXYBENZOATE
OCTAPRENYLTRANSFERASE (UbiA), partial (6%)
Length = 734
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 113 GFASGRSAITVLVPYCSRRVQHH 135
GF+SGR IT PY +R+ HH
Sbjct: 300 GFSSGRKIITGNKPYVTRQSFHH 232
>TC206477 similar to UP|SUCB_ARATH (O82662) Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (Succinyl-CoA
synthetase, beta chain) (SCS-beta) , partial (77%)
Length = 1331
Score = 27.3 bits (59), Expect = 7.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 20 SLVNL*K*QTNFRWYYNC 37
SL+N+ QTN+ WY+ C
Sbjct: 897 SLINIGAFQTNYNWYFQC 844
>AI736630
Length = 429
Score = 26.9 bits (58), Expect = 9.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 134 HHVKCNYSCGYPF 146
HHV ++SCG+PF
Sbjct: 374 HHVNISFSCGFPF 412
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.369 0.169 0.685
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,536,904
Number of Sequences: 63676
Number of extensions: 205470
Number of successful extensions: 2587
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2587
length of query: 267
length of database: 12,639,632
effective HSP length: 96
effective length of query: 171
effective length of database: 6,526,736
effective search space: 1116071856
effective search space used: 1116071856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC148775.2