BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148775.1 - phase: 0
(207 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209106 similar to UP|Q41101 (Q41101) Phaseolin G-box binding p... 46 1e-05
TC213016 homologue to GB|AAN73298.1|25141207|BT002301 At4g16430/... 44 7e-05
TC209299 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl... 43 1e-04
TC213483 similar to UP|Q8LPT0 (Q8LPT0) At2g46510/F13A10.4, parti... 42 2e-04
TC213788 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl... 41 3e-04
TC218173 similar to UP|Q41102 (Q41102) Phaseolin G-box binding p... 41 4e-04
TC218174 similar to UP|Q41102 (Q41102) Phaseolin G-box binding p... 40 6e-04
TC226529 similar to UP|Q6ZBQ2 (Q6ZBQ2) BHLH protein family-like,... 40 7e-04
TC219653 similar to GB|AAL79583.1|18958020|AY079033 AT3g25710/K1... 39 0.001
TC229878 39 0.002
TC231689 weakly similar to UP|Q38736 (Q38736) DEL, partial (22%) 39 0.002
TC226527 similar to UP|Q9LEZ3 (Q9LEZ3) Myc-like protein, partial... 39 0.002
TC226133 similar to UP|Q6ZBQ2 (Q6ZBQ2) BHLH protein family-like,... 38 0.004
TC208663 similar to UP|PIF4_ARATH (Q8W2F3) Phytochrome-interacti... 37 0.006
TC218434 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacti... 36 0.014
TC220578 similar to UP|Q93Z71 (Q93Z71) AT5g57150/MUL3_10, partia... 35 0.018
TC217804 35 0.018
TC228741 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacti... 35 0.024
TC218350 similar to GB|BAC56979.1|28372351|AB103113 PIF3 like ba... 35 0.024
TC221759 homologue to UP|O81348 (O81348) Symbiotic ammonium tran... 35 0.024
>TC209106 similar to UP|Q41101 (Q41101) Phaseolin G-box binding protein PG1,
partial (40%)
Length = 1101
Score = 46.2 bits (108), Expect = 1e-05
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = +3
Query: 145 RDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFII 201
R R + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+ L+ I
Sbjct: 258 RPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAILYI 437
Query: 202 NAL 204
N L
Sbjct: 438 NEL 446
>TC213016 homologue to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4240w
{Arabidopsis thaliana;} , partial (16%)
Length = 424
Score = 43.5 bits (101), Expect = 7e-05
Identities = 23/61 (37%), Positives = 38/61 (61%), Gaps = 3/61 (4%)
Frame = +1
Query: 147 RNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINA 203
R + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+ L+ IN
Sbjct: 4 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINE 183
Query: 204 L 204
L
Sbjct: 184 L 186
>TC209299 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4240w
{Arabidopsis thaliana;} , partial (31%)
Length = 608
Score = 42.7 bits (99), Expect = 1e-04
Identities = 23/70 (32%), Positives = 41/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 138 SLNLMRMRDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLI 194
S++ + R + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+ L+
Sbjct: 399 SIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDNASLL 578
Query: 195 SSCCFIINAL 204
I L
Sbjct: 579 GDAITFITDL 608
>TC213483 similar to UP|Q8LPT0 (Q8LPT0) At2g46510/F13A10.4, partial (17%)
Length = 914
Score = 42.4 bits (98), Expect = 2e-04
Identities = 22/63 (34%), Positives = 39/63 (60%), Gaps = 3/63 (4%)
Frame = +2
Query: 145 RDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFII 201
+ R + +P++ + L+H+ +ER+RREKLN+ F ALR+++P +K+ L+ I
Sbjct: 104 KPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDTIAYI 283
Query: 202 NAL 204
N L
Sbjct: 284 NEL 292
>TC213788 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4240w
{Arabidopsis thaliana;} , partial (19%)
Length = 452
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/67 (34%), Positives = 43/67 (63%), Gaps = 4/67 (5%)
Frame = +1
Query: 138 SLNLMRMRDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKV-RTKLL 193
S++ + + + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+ + LL
Sbjct: 250 SIHADERKPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLL 429
Query: 194 ISSCCFI 200
+ FI
Sbjct: 430 GDAITFI 450
>TC218173 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (28%)
Length = 867
Score = 40.8 bits (94), Expect = 4e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 158 LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINAL 204
L+H+ +ER+RREKLN+ F ALRA++P +K+ L+ I L
Sbjct: 27 LNHVEAERQRREKLNQRFYALRAVVPNVSKMDXASLLGDAISYITEL 167
>TC218174 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (49%)
Length = 1345
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 158 LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINAL 204
L+H+ +ER+RREKLN+ F ALRA++P +K+ L+ I L
Sbjct: 429 LNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITEL 569
>TC226529 similar to UP|Q6ZBQ2 (Q6ZBQ2) BHLH protein family-like, partial
(23%)
Length = 1410
Score = 40.0 bits (92), Expect = 7e-04
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +2
Query: 141 LMRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTK 191
L+++ ++ +P++ + H +E+RRR K+N+ FQ LR L+P + R K
Sbjct: 227 LVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDK 379
>TC219653 similar to GB|AAL79583.1|18958020|AY079033 AT3g25710/K13N2_1
{Arabidopsis thaliana;} , partial (47%)
Length = 1346
Score = 39.3 bits (90), Expect = 0.001
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Frame = +2
Query: 91 HQHQPQQNYVAHPEASAFGRYRHDKSPNI------GSNFRRQSLMKRSFA---------- 134
H HQ ++ P+ S + + + P++ GS+ ++ SF
Sbjct: 281 HHHQVHDLFLVPPQTSPYASLFNRRGPSLQFAYDHGSSSDHLRIISESFVGPVVQPGSAP 460
Query: 135 FFRSLNLMRMRDRN-QAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTKLL 193
F L +M + A+ + H +ERRRRE++N + LR+LLP TK L
Sbjct: 461 FGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASL 640
Query: 194 IS 195
++
Sbjct: 641 LA 646
>TC229878
Length = 509
Score = 38.9 bits (89), Expect = 0.002
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 142 MRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTK 191
+++ + + R + + H +E+RRR K+NE FQ LR L+PQ + R K
Sbjct: 101 VKVDEPSTGKRVNPQRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDK 250
>TC231689 weakly similar to UP|Q38736 (Q38736) DEL, partial (22%)
Length = 937
Score = 38.5 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2
Query: 156 NQLHHMISERRRREKLNENFQALRALLPQGTK 187
N ++H++SERRRR KLN+ F LR+++P +K
Sbjct: 698 NGMNHVMSERRRRAKLNQRFLTLRSMVPSISK 793
>TC226527 similar to UP|Q9LEZ3 (Q9LEZ3) Myc-like protein, partial (23%)
Length = 1605
Score = 38.5 bits (88), Expect = 0.002
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 152 RPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTK 191
+P++ + H +E+RRR K+N+ FQ LR L+P + R K
Sbjct: 1430 KPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDK 1549
>TC226133 similar to UP|Q6ZBQ2 (Q6ZBQ2) BHLH protein family-like, partial
(23%)
Length = 1519
Score = 37.7 bits (86), Expect = 0.004
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +1
Query: 145 RDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVR 189
+D + S+ + H ++E+RRR K+NE FQ LR L+P + R
Sbjct: 358 KDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKR 492
>TC208663 similar to UP|PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4
(Basic helix-loop-helix protein 9) (bHLH9) (AtbHLH009)
(Short under red-light 2), partial (19%)
Length = 1102
Score = 37.0 bits (84), Expect = 0.006
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 147 RNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTK 187
R +AR + H +SERRRR+++NE +AL+ L+P +K
Sbjct: 235 RTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSK 357
>TC218434 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008), partial
(11%)
Length = 832
Score = 35.8 bits (81), Expect = 0.014
Identities = 16/44 (36%), Positives = 30/44 (67%)
Frame = +2
Query: 145 RDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKV 188
R+ N+ R + ++H++ SE++RREK+N+ + L+ L+P KV
Sbjct: 107 REGNRVKRSRNPEVHNL-SEKKRREKINKKMRTLKDLIPNCNKV 235
>TC220578 similar to UP|Q93Z71 (Q93Z71) AT5g57150/MUL3_10, partial (38%)
Length = 856
Score = 35.4 bits (80), Expect = 0.018
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 154 SSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINAL 204
SS +++SER RR+KLN+ ALRA++P TK+ +I I L
Sbjct: 397 SSVASKNIVSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQHL 549
>TC217804
Length = 1578
Score = 35.4 bits (80), Expect = 0.018
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +1
Query: 145 RDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTK 187
R R +N + H SERRRR+K+N+ + L+ L+P +K
Sbjct: 778 RSSGSNKRIKANSVVHKQSERRRRDKINQRMKELQKLVPNSSK 906
>TC228741 similar to UP|PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008), partial
(25%)
Length = 763
Score = 35.0 bits (79), Expect = 0.024
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 160 HMISERRRREKLNENFQALRALLPQGTKV 188
H +SER+RR+++NE +AL+ L+P KV
Sbjct: 309 HNLSERKRRDRINEKMRALQELIPNCNKV 395
>TC218350 similar to GB|BAC56979.1|28372351|AB103113 PIF3 like basic Helix
Loop Helix protein {Arabidopsis thaliana;} , partial
(25%)
Length = 1060
Score = 35.0 bits (79), Expect = 0.024
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 160 HMISERRRREKLNENFQALRALLPQGTK 187
H +SERRRR+++NE +AL+ L+P+ K
Sbjct: 85 HNLSERRRRDRINEKMKALQELIPRCNK 168
>TC221759 homologue to UP|O81348 (O81348) Symbiotic ammonium transporter,
partial (70%)
Length = 818
Score = 35.0 bits (79), Expect = 0.024
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 160 HMISERRRREKLNENFQALRALLP 183
H+I+ER+RREKL++ F AL AL+P
Sbjct: 604 HIIAERKRREKLSQRFIALSALVP 675
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,614,242
Number of Sequences: 63676
Number of extensions: 137822
Number of successful extensions: 1295
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of query: 207
length of database: 12,639,632
effective HSP length: 93
effective length of query: 114
effective length of database: 6,717,764
effective search space: 765825096
effective search space used: 765825096
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC148775.1