BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148763.8 - phase: 1 /pseudo
(180 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226950 weakly similar to UP|Q7XCK3 (Q7XCK3) Mucin-like protein... 201 2e-52
TC208043 similar to UP|GLN3_YEAST (P18494) Nitrogen regulatory p... 90 7e-19
TC203449 78 3e-15
BU760638 weakly similar to GP|23237921|db contains ESTs D41667(S... 75 1e-14
TC221394 similar to UP|Q9SJE4 (Q9SJE4) T27G7.16, partial (48%) 67 3e-12
TC203389 homologue to UP|Q6RUN3 (Q6RUN3) Type III chlorophyll a/... 51 3e-07
BE191573 50 8e-07
TC211237 weakly similar to UP|Q8H3A4 (Q8H3A4) ABC transporter pe... 37 0.005
AI938811 34 0.043
TC211641 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90,... 30 0.62
TC208125 similar to UP|Q94AF0 (Q94AF0) AT4g29820/F27B13_60 (MRNA... 27 6.8
TC205953 similar to UP|Q700B1 (Q700B1) Non-cyanogenic beta-gluco... 27 6.8
TC205768 weakly similar to GB|AAR05798.1|37962888|AY344062 LLS1-... 26 8.9
>TC226950 weakly similar to UP|Q7XCK3 (Q7XCK3) Mucin-like protein, partial
(49%)
Length = 1290
Score = 201 bits (510), Expect = 2e-52
Identities = 98/154 (63%), Positives = 125/154 (80%), Gaps = 4/154 (2%)
Frame = +1
Query: 30 GCEDGWIKRITVADSVV----ENWVHSSGRPLGLALEKTGELIVADAHLGLLRVTQKEGK 85
GCEDGWIKR+TV DSVV E+WV++ GRPLGL L+ GELIVADA GLLRV+
Sbjct: 283 GCEDGWIKRVTVNDSVVDSAVEDWVNTGGRPLGLVLKPNGELIVADAEKGLLRVSS---- 450
Query: 86 EPKVEILANEHDGLKFKLTDGVDVGEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSY 145
E ++E+L +E +GLKFKLTDGVD+ +DGTIYFT+A++KY + D D+LEG+P+GRF SY
Sbjct: 451 EKEIELLVDEFEGLKFKLTDGVDIADDGTIYFTDASHKYPVKDAVFDVLEGKPNGRFFSY 630
Query: 146 NPATKKVTLLARNLYFANRVAIAPDQKFVVYCET 179
NPATKK TLLA++LYFAN VA++ DQ+FVV+CE+
Sbjct: 631 NPATKKTTLLAQDLYFANGVAVSADQQFVVFCES 732
>TC208043 similar to UP|GLN3_YEAST (P18494) Nitrogen regulatory protein GLN3,
partial (4%)
Length = 1132
Score = 89.7 bits (221), Expect = 7e-19
Identities = 54/132 (40%), Positives = 78/132 (58%), Gaps = 2/132 (1%)
Frame = +2
Query: 51 HSSGRPLGLALEK-TGELIVADAHLGLLRVTQKEGKEPKVEILANEHDGLKFKLTDGVDV 109
H GRPLGL +K +G+L +ADA+LGL V G +V E +G + T+ +D+
Sbjct: 176 HICGRPLGLRFDKKSGDLYIADAYLGLKVVGSTGGLATEV---VTEVEGQPLQFTNDMDI 346
Query: 110 GEDG-TIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANRVAIA 168
ED IYFT++T + F +L G+ GR M Y+ +TK+VT+L R+L F N VA++
Sbjct: 347 SEDADVIYFTDSTTIFQRRQFMLVLLGGDKTGRLMKYHKSTKEVTILLRDLAFPNGVALS 526
Query: 169 PDQKFVVYCETA 180
D FV+ ETA
Sbjct: 527 KDGSFVLVAETA 562
>TC203449
Length = 1361
Score = 77.8 bits (190), Expect = 3e-15
Identities = 45/128 (35%), Positives = 73/128 (56%), Gaps = 2/128 (1%)
Frame = +3
Query: 54 GRPLGLALEK-TGELIVADAHLGLLRVTQKEGKEPKVEILANEHDGLKFKLTDGVDVG-E 111
GRPLGL T EL +ADA+ GLL V G + LA +G+ F+ T+ +D+ +
Sbjct: 363 GRPLGLKFNTVTCELYIADAYFGLLVVGPSGGVAKQ---LATSAEGVPFRFTNALDIDTK 533
Query: 112 DGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANRVAIAPDQ 171
G +YFT+++ + + + IL G+ GR + Y P+T+ V +L + L F N VA++ D
Sbjct: 534 TGEVYFTDSSILFQRRVYISIILSGDRTGRLLKYVPSTQSVHVLVKGLAFPNGVALSKDN 713
Query: 172 KFVVYCET 179
F++ E+
Sbjct: 714 SFIIVAES 737
>BU760638 weakly similar to GP|23237921|db contains ESTs D41667(S4320)
AU033165(S4320)~mucin-like protein, partial (27%)
Length = 430
Score = 75.5 bits (184), Expect = 1e-14
Identities = 31/89 (34%), Positives = 56/89 (62%)
Frame = +2
Query: 91 ILANEHDGLKFKLTDGVDVGEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATK 150
+L + +G + + D V G +G +YF+ + K++L D+Y D+LE P G+ + YNP +
Sbjct: 11 VLVSHVNGSQLRFADDVIEGSNGNVYFSVVSTKFDLQDWYLDVLEARPRGQVLKYNPTSN 190
Query: 151 KVTLLARNLYFANRVAIAPDQKFVVYCET 179
+ ++ N+ FAN VA++ D+ ++V CET
Sbjct: 191 ETVIVLDNVAFANGVALSKDEDYLVVCET 277
>TC221394 similar to UP|Q9SJE4 (Q9SJE4) T27G7.16, partial (48%)
Length = 697
Score = 67.4 bits (163), Expect = 3e-12
Identities = 29/77 (37%), Positives = 47/77 (60%)
Frame = +3
Query: 102 KLTDGVDVGEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYF 161
+ T+ VDV +G +YFTE+ Y +F + G+ GR + YN ATK+ T++ RN+ F
Sbjct: 9 RFTNDVDVDTEGNVYFTESRALYPRRNFLQLVFSGDDSGRVLKYNLATKETTVIVRNIQF 188
Query: 162 ANRVAIAPDQKFVVYCE 178
N ++++ D F V+CE
Sbjct: 189 PNGISLSKDGSFFVFCE 239
>TC203389 homologue to UP|Q6RUN3 (Q6RUN3) Type III chlorophyll a/b-binding
protein (Fragment), partial (78%)
Length = 1187
Score = 50.8 bits (120), Expect = 3e-07
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +2
Query: 104 TDGVDVG-EDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFA 162
T+ +D+ + G +YFT+++ + + + IL G+ GR + Y P+T+ V +L + L F
Sbjct: 5 TNALDIDTKTGEVYFTDSSILFQRRVYISIILSGDRTGRLLKYVPSTQSVHVLVKGLAFP 184
Query: 163 NRVAIAPDQKFVVYCET 179
N VA++ D F++ E+
Sbjct: 185 NGVALSKDNSFILVAES 235
>BE191573
Length = 364
Score = 49.7 bits (117), Expect = 8e-07
Identities = 22/68 (32%), Positives = 42/68 (61%)
Frame = +2
Query: 113 GTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANRVAIAPDQK 172
G +YFT++ + + + IL G+ GR + Y P+T++V +L + L F NRVA++ D
Sbjct: 20 GEVYFTDSNILFQRRVYISIILSGDRTGRLLKYVPSTQRVHVLDKGLPFPNRVALSKDTS 199
Query: 173 FVVYCETA 180
F++ +++
Sbjct: 200 FILVTKSS 223
>TC211237 weakly similar to UP|Q8H3A4 (Q8H3A4) ABC transporter permease
protein-like protein, partial (13%)
Length = 655
Score = 37.0 bits (84), Expect = 0.005
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 145 YNPATKKVTLLARNLYFANRVAIAPDQKFVVYCET 179
YNP + + ++ N+ FAN VA++ D+ ++V CET
Sbjct: 14 YNPTSNETVIVLDNVAFANGVALSKDEDYLVVCET 118
>AI938811
Length = 130
Score = 33.9 bits (76), Expect = 0.043
Identities = 13/42 (30%), Positives = 24/42 (56%)
Frame = +2
Query: 138 PHGRFMSYNPATKKVTLLARNLYFANRVAIAPDQKFVVYCET 179
P G+ + YNP + ++ N+ FAN ++ DQ ++V +T
Sbjct: 5 PPGQLLKYNPTSNDTIIVLDNVAFANSFTLSKDQHYLVLSKT 130
>TC211641 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90, partial
(30%)
Length = 724
Score = 30.0 bits (66), Expect = 0.62
Identities = 26/93 (27%), Positives = 37/93 (38%), Gaps = 6/93 (6%)
Frame = +3
Query: 33 DGWIKRITVADSVVENWVHSSGRP------LGLALEKTGELIVADAHLGLLRVTQKEGKE 86
DG I W +SS P GLALE A G++ + E +
Sbjct: 18 DGTFHSIKALSQSDGRWRYSSDNPESSTYAAGLALE---------ALAGVISLASSEIDQ 170
Query: 87 PKVEILANEHDGLKFKLTDGVDVGEDGTIYFTE 119
+V + N+ KL D ++ +DGT YF E
Sbjct: 171 SRVNTVKNDI----LKLFDSIEKYDDGTFYFDE 257
>TC208125 similar to UP|Q94AF0 (Q94AF0) AT4g29820/F27B13_60 (MRNA cleavage
factor subunit-like protein), partial (86%)
Length = 1141
Score = 26.6 bits (57), Expect = 6.8
Identities = 29/95 (30%), Positives = 43/95 (44%), Gaps = 6/95 (6%)
Frame = +1
Query: 25 ASYIYGCEDGW-IKRITVADSVVENWVHSSGRPLGLALEKTGELIVA---DAHLGLLRVT 80
+SY +G +D K +T+ D V+ + S+ G+ L+V HL LL++
Sbjct: 238 SSYYFGSKDAVPSKDLTLVDRVLR--MKSNYAASGIRTCVEAVLLVELFKHPHLLLLQIR 411
Query: 81 QKEGKEPKVEILANEHD--GLKFKLTDGVDVGEDG 113
K P + E D GLK KL + V EDG
Sbjct: 412 NSIYKLPGGRLRPGESDTDGLKRKLARKLSVNEDG 516
>TC205953 similar to UP|Q700B1 (Q700B1) Non-cyanogenic beta-glucosidase ,
partial (91%)
Length = 1776
Score = 26.6 bits (57), Expect = 6.8
Identities = 28/113 (24%), Positives = 40/113 (34%)
Frame = +3
Query: 18 LGL**EEASYIYGCEDGWIKRITVADSVVENWVHSSGRPLGLALEKTGELIVADAHLGLL 77
+GL + YI G K + DS +GRPLGL L LL
Sbjct: 1020 IGLNYYSSGYINGVPPSNDKPNFLTDSRTNTSFERNGRPLGLRAASVWIYFYPRGLLDLL 1199
Query: 78 RVTQKEGKEPKVEILANEHDGLKFKLTDGVDVGEDGTIYFTEATYKYNLYDFY 130
T+++ P + I N G++ D T+ EA D+Y
Sbjct: 1200 LYTKEKYNNPLIYITEN-----------GMNEFNDPTLSVEEALMDIYRIDYY 1325
>TC205768 weakly similar to GB|AAR05798.1|37962888|AY344062 LLS1-like protein
{Arabidopsis thaliana;} , partial (44%)
Length = 1101
Score = 26.2 bits (56), Expect = 8.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 13/45 (28%)
Frame = -1
Query: 132 DILEGEPHGRFMS-------------YNPATKKVTLLARNLYFAN 163
++LEGEPH F+S YN +TLLA+N AN
Sbjct: 618 EVLEGEPHYIFLSNQPDHLHTSLTNFYNQ*QGHLTLLAQNRLCAN 484
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.330 0.148 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,454,698
Number of Sequences: 63676
Number of extensions: 90210
Number of successful extensions: 449
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of query: 180
length of database: 12,639,632
effective HSP length: 91
effective length of query: 89
effective length of database: 6,845,116
effective search space: 609215324
effective search space used: 609215324
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC148763.8