BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148762.6 + phase: 0
(93 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217083 similar to UP|Q9LJX1 (Q9LJX1) DNA-binding protein-like,... 146 2e-36
TC217082 similar to UP|Q9LJX1 (Q9LJX1) DNA-binding protein-like,... 146 2e-36
TC207177 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {A... 128 4e-31
TC219438 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {A... 125 3e-30
CD416537 122 4e-29
TC230872 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {A... 115 3e-27
TC222727 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {A... 103 2e-23
CD408973 77 2e-15
TC223758 70 2e-13
TC215735 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 32 0.053
TC215736 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 32 0.053
TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 32 0.053
TC205595 32 0.053
TC214588 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (35%) 31 0.090
TC216876 31 0.12
TC230392 31 0.12
TC209823 31 0.12
BE611936 30 0.20
TC214592 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (51%) 30 0.20
TC214574 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (33%) 30 0.26
>TC217083 similar to UP|Q9LJX1 (Q9LJX1) DNA-binding protein-like, partial
(97%)
Length = 550
Score = 146 bits (368), Expect = 2e-36
Identities = 80/92 (86%), Positives = 85/92 (91%)
Frame = +2
Query: 1 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQ 60
MSSRRSRQQS STRISDDQIIDLV KLRQLVPEIR+RRSDKV ASKVLQETCNYIR+L
Sbjct: 257 MSSRRSRQQSA-STRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLH 433
Query: 61 REVDDLSLRLSQLLATIDSDSAEASIIRSLLN 92
REVDDLS RLSQLLATID+DS EA+IIRSL+N
Sbjct: 434 REVDDLSERLSQLLATIDADSPEAAIIRSLIN 529
>TC217082 similar to UP|Q9LJX1 (Q9LJX1) DNA-binding protein-like, partial
(97%)
Length = 835
Score = 146 bits (368), Expect = 2e-36
Identities = 80/92 (86%), Positives = 85/92 (91%)
Frame = +3
Query: 1 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQ 60
MSSRRSRQQS STRISDDQIIDLV KLRQLVPEIR+RRSDKV ASKVLQETCNYIR+L
Sbjct: 285 MSSRRSRQQSA-STRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLH 461
Query: 61 REVDDLSLRLSQLLATIDSDSAEASIIRSLLN 92
REVDDLS RLSQLLATID+DS EA+IIRSL+N
Sbjct: 462 REVDDLSERLSQLLATIDADSPEAAIIRSLIN 557
>TC207177 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {Arabidopsis
thaliana;} , partial (95%)
Length = 999
Score = 128 bits (322), Expect = 4e-31
Identities = 70/92 (76%), Positives = 81/92 (87%), Gaps = 1/92 (1%)
Frame = +3
Query: 1 MSSRRSR-QQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNL 59
MSSRRSR +QSG ST I+D QI DL+ KL+QL+PE+R RRSDKV ASKVLQETCNYI++L
Sbjct: 378 MSSRRSRSRQSGVSTEITDAQITDLISKLQQLIPELRARRSDKVSASKVLQETCNYIKSL 557
Query: 60 QREVDDLSLRLSQLLATIDSDSAEASIIRSLL 91
REVDDLS RLSQLLAT DS+SA+A+IIRSLL
Sbjct: 558 HREVDDLSDRLSQLLATTDSNSAQAAIIRSLL 653
>TC219438 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {Arabidopsis
thaliana;} , partial (81%)
Length = 843
Score = 125 bits (315), Expect = 3e-30
Identities = 68/92 (73%), Positives = 79/92 (84%), Gaps = 1/92 (1%)
Frame = +2
Query: 1 MSSRRSR-QQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNL 59
MSSRRSR +QSG S I+D QI DLV KL+QL+PE+R RRSDKV A+KVLQETCNYI+NL
Sbjct: 335 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNL 514
Query: 60 QREVDDLSLRLSQLLATIDSDSAEASIIRSLL 91
REVDDLS RLS+LLA DS+SA+A+IIRSLL
Sbjct: 515 HREVDDLSDRLSELLANTDSNSAQAAIIRSLL 610
>CD416537
Length = 642
Score = 122 bits (305), Expect = 4e-29
Identities = 67/92 (72%), Positives = 78/92 (83%), Gaps = 1/92 (1%)
Frame = -2
Query: 1 MSSRRSRQ-QSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNL 59
MSSRRSR QS ST I+D QI D++ KL+QL+PE+ RRSDKV ASKVLQETCNYI++L
Sbjct: 488 MSSRRSRSSQSDVSTEITDAQITDIISKLQQLIPELDARRSDKVSASKVLQETCNYIKSL 309
Query: 60 QREVDDLSLRLSQLLATIDSDSAEASIIRSLL 91
REVDDLS RLSQLLAT DS+SA+A+IIRSLL
Sbjct: 308 HREVDDLSDRLSQLLATTDSNSAQAAIIRSLL 213
>TC230872 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {Arabidopsis
thaliana;} , partial (84%)
Length = 695
Score = 115 bits (289), Expect = 3e-27
Identities = 66/94 (70%), Positives = 79/94 (83%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 MSSRRSR-QQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNL 59
MSSRRSR +Q+ S I+DDQI DLV KL+QL+PEIR+RRSDKV ASKVLQETCNYIR+L
Sbjct: 214 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSL 393
Query: 60 QREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 93
REV DLS RLS+LL T +D+A+A+IIR+LL Q
Sbjct: 394 HREVGDLSERLSELLDT--TDTAQAAIIRNLLMQ 489
>TC222727 similar to GB|AAO42932.1|28416803|BT004686 At1g26948 {Arabidopsis
thaliana;} , partial (64%)
Length = 583
Score = 103 bits (256), Expect = 2e-23
Identities = 54/62 (87%), Positives = 55/62 (88%)
Frame = +3
Query: 32 VPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 91
VPEIRNRRSDKV ASKVLQETCNYIR L REV DLS RLSQLL TID+DSAEA IIRSLL
Sbjct: 3 VPEIRNRRSDKVSASKVLQETCNYIRGLHREVSDLSERLSQLLTTIDADSAEAGIIRSLL 182
Query: 92 NQ 93
NQ
Sbjct: 183NQ 188
>CD408973
Length = 607
Score = 76.6 bits (187), Expect = 2e-15
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = -3
Query: 43 VPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 91
V ASKVLQETCNYI++L REVDDLS RLSQLLAT DS+SA+A+IIRSLL
Sbjct: 383 VSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLL 237
>TC223758
Length = 714
Score = 70.1 bits (170), Expect = 2e-13
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +1
Query: 42 KVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 93
+V ASKVLQETCNYIR+L REVDDLS RLS+LLAT +D+A+A+IIR+LL Q
Sbjct: 379 QVSASKVLQETCNYIRSLHREVDDLSERLSELLAT--TDTAQAAIIRNLLMQ 528
>TC215735 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (22%)
Length = 691
Score = 32.0 bits (71), Expect = 0.053
Identities = 20/64 (31%), Positives = 40/64 (62%)
Frame = +1
Query: 15 RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLL 74
R+ ++I + + L+ LVP N+ + K + +L E NY+++LQR+V+ LS++L+ +
Sbjct: 4 RVRREKISERMKYLQDLVPGC-NKVTGK---AGMLDEIINYVQSLQRQVEFLSMKLAAVN 171
Query: 75 ATID 78
+D
Sbjct: 172PRLD 183
>TC215736 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (28%)
Length = 1047
Score = 32.0 bits (71), Expect = 0.053
Identities = 18/57 (31%), Positives = 31/57 (53%), Gaps = 7/57 (12%)
Frame = +1
Query: 29 RQLVPEIRNRRSDKVPASK-------VLQETCNYIRNLQREVDDLSLRLSQLLATID 78
R+ + E N D VP +L E NY+++LQR+V+ LS++L+ + +D
Sbjct: 370 REKISERMNYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLD 540
>TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (30%)
Length = 1417
Score = 32.0 bits (71), Expect = 0.053
Identities = 20/64 (31%), Positives = 40/64 (62%)
Frame = +3
Query: 15 RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLL 74
R+ ++I + + L+ LVP N+ + K + +L E NY+++LQR+V+ LS++L+ +
Sbjct: 684 RVRREKISERMKYLQDLVPGC-NKVAGK---AGMLDEIINYVQSLQRQVEFLSMKLAAVN 851
Query: 75 ATID 78
+D
Sbjct: 852 PRLD 863
>TC205595
Length = 944
Score = 32.0 bits (71), Expect = 0.053
Identities = 20/64 (31%), Positives = 40/64 (62%)
Frame = +2
Query: 15 RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLL 74
R+ ++I + + L+ LVP N+ + K + +L E NY+++LQR+V+ LS++L+ +
Sbjct: 200 RVRREKISERMKYLQDLVPGC-NKVAGK---AGMLDEIINYVQSLQRQVEFLSMKLAAVN 367
Query: 75 ATID 78
+D
Sbjct: 368 PRLD 379
>TC214588 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (35%)
Length = 837
Score = 31.2 bits (69), Expect = 0.090
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 15 RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRL 70
R ++I + + L+ LVP N+ DK + VL E NY+++LQR+V+ LS++L
Sbjct: 435 RARREKISERMKILQDLVPGC-NKVIDK---AYVLDEIINYVQSLQRQVEFLSMKL 590
>TC216876
Length = 592
Score = 30.8 bits (68), Expect = 0.12
Identities = 15/46 (32%), Positives = 30/46 (64%)
Frame = +1
Query: 48 VLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 93
+L E NY+++LQR+V+ LS++L+ + +D + E + + +L Q
Sbjct: 169 MLDEIINYVQSLQRQVEFLSMKLATVNPRLDF-NIEGLLAKDILQQ 303
>TC230392
Length = 708
Score = 30.8 bits (68), Expect = 0.12
Identities = 19/60 (31%), Positives = 38/60 (62%)
Frame = +3
Query: 19 DQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATID 78
++I + + L+ LVP N+ + K + +L E NY+++LQR+V+ LS++L+ + +D
Sbjct: 231 EKISERMKLLQDLVPGC-NKVTGK---ALMLDEIINYVQSLQRQVEFLSMKLASVNTRLD 398
>TC209823
Length = 1092
Score = 30.8 bits (68), Expect = 0.12
Identities = 20/68 (29%), Positives = 32/68 (46%)
Frame = +1
Query: 13 STRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQ 72
S R ++ DLV LR L+P + +PA+ + YI LQ +V L+ + +
Sbjct: 253 SERDRRKKVNDLVSSLRSLLPGPDQTKKMSIPAT--VSRVLKYIPELQHQVQALTKKKEE 426
Query: 73 LLATIDSD 80
LL I +
Sbjct: 427 LLCRISKN 450
>BE611936
Length = 416
Score = 30.0 bits (66), Expect = 0.20
Identities = 12/31 (38%), Positives = 23/31 (73%)
Frame = +2
Query: 48 VLQETCNYIRNLQREVDDLSLRLSQLLATID 78
+L E NY+++LQR+V+ LS++L+ + +D
Sbjct: 53 MLDEIINYVQSLQRQVEFLSMKLASVNTRMD 145
>TC214592 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (51%)
Length = 821
Score = 30.0 bits (66), Expect = 0.20
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = +1
Query: 48 VLQETCNYIRNLQREVDDLSLRLSQLLATI 77
VL E NYI++LQR+V+ LS++L + + I
Sbjct: 181 VLDEIINYIQSLQRQVEFLSMKLEAVNSRI 270
>TC214574 similar to UP|Q71SQ1 (Q71SQ1) MYC1, partial (33%)
Length = 636
Score = 29.6 bits (65), Expect = 0.26
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 48 VLQETCNYIRNLQREVDDLSLRLSQLLATIDS 79
VL E NYI++LQR+ + LS++L + + ++S
Sbjct: 49 VLDEIINYIQSLQRQAEFLSMKLEAVNSRMES 144
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.130 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,993,504
Number of Sequences: 63676
Number of extensions: 27149
Number of successful extensions: 171
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of query: 93
length of database: 12,639,632
effective HSP length: 69
effective length of query: 24
effective length of database: 8,245,988
effective search space: 197903712
effective search space used: 197903712
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC148762.6