BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148755.5 + phase: 0
(569 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 175 4e-44
CO982349 152 3e-37
BI972659 140 1e-33
TC231841 121 7e-28
TC233392 111 1e-24
CO986021 110 2e-24
CO984521 108 8e-24
CO979823 107 2e-23
TC222857 106 2e-23
AI496436 104 9e-23
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 103 2e-22
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 103 3e-22
TC222789 101 8e-22
CA851073 101 8e-22
TC221865 101 1e-21
TC211809 98 1e-21
TC213061 99 7e-21
TC231922 96 6e-20
TC233956 91 1e-18
AW757033 90 2e-18
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 175 bits (444), Expect = 4e-44
Identities = 80/200 (40%), Positives = 125/200 (62%)
Frame = +1
Query: 1 MMKTSVLSNLFQPYGVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGL 60
+M+ +V NL++PY VG G V +S LQ+ADDT+ GE + NV I+ +L E VS L
Sbjct: 313 LMRRAVEENLYKPYLVGANG-VPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNL 489
Query: 61 KVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRIS 120
++NF KS ++ W EAA L+C PF+YLG+PIG + R+ W ++ +
Sbjct: 490 RINFAKSCFGVFGVTDQWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCE 669
Query: 121 ARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVS 180
+LS W +++S GGR+ L+KSVL+S+P+YF SFF+ P ++ + I + WGG
Sbjct: 670 RKLSKWK*RHISFGGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQ 849
Query: 181 RKIAWVKWDSVCLPMSQGGL 200
+KI+W++W+ +CLP +GG+
Sbjct: 850 KKISWIRWEKLCLPKERGGI 909
>CO982349
Length = 795
Score = 152 bits (385), Expect = 3e-37
Identities = 74/194 (38%), Positives = 117/194 (60%)
Frame = +3
Query: 1 MMKTSVLSNLFQPYGVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGL 60
+M+ +V F + VG E +S LQ+ADDT+ E + N++ I+ +L E SGL
Sbjct: 216 LMREAVDRKRFNSFLVGKNKEP-VSILQYADDTIFFEEATMENMKVIKTILRCFELASGL 392
Query: 61 KVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRIS 120
K+NF +S + W EAA LNC +PF YLG+PI + R P++ +
Sbjct: 393 KINFAESRFGAIWKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCE 572
Query: 121 ARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVS 180
+L+ W +++S GGR+ L+ ++L++LP+YF SFF+AP+ ++ + +I +K WGG
Sbjct: 573 TKLARWKQRHISLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQ 752
Query: 181 RKIAWVKWDSVCLP 194
R+IAWVKW++VCLP
Sbjct: 753 RRIAWVKWETVCLP 794
>BI972659
Length = 453
Score = 140 bits (354), Expect = 1e-33
Identities = 65/151 (43%), Positives = 97/151 (64%)
Frame = +1
Query: 36 IGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPF 95
+GE SW N+ ++++L E VSGL++N+ KS V +W +AA +LNC+ IPF
Sbjct: 1 VGEASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQLDIPF 180
Query: 96 MYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFF 155
YLG+PI W+P++++ A+LS WN KYLS GGR+ L+KSVL++LP+Y LSFF
Sbjct: 181 HYLGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFF 360
Query: 156 KAPTGIISSIESIFKKKFWGGCEVSRKIAWV 186
K P I+ + S+ + WGG + +I+WV
Sbjct: 361 KIPQRIVDKLVSLQRTFMWGGNQHHNRISWV 453
>TC231841
Length = 791
Score = 121 bits (304), Expect = 7e-28
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 2/203 (0%)
Frame = +3
Query: 358 LQDNIQDKWRWLLDPILGYTVKGTYCFLTN-MEGQVTSGVGFDVWHRRVPSKVSLFAWRL 416
+Q D+W W DP YT K Y L M + GV ++W ++PSK+++FAWRL
Sbjct: 45 IQPQQGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIFAWRL 224
Query: 417 LQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCV 476
++DR+ TR+NL RR ++ D C E+ HLF C+ VW+ W+ + V
Sbjct: 225 IRDRLPTRSNL-RRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGV 401
Query: 477 FQGSVTQHFIQFTNLAGMTRGSH-DYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVER 535
F QHF+Q ++ G+T G K WLA W IWK+RNN +F+N + I++
Sbjct: 402 FPNHPRQHFLQ--HIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFNANKILDE 575
Query: 536 VKLFSFLWLSSNVASFPFGFHDW 558
+ WL+ F ++ W
Sbjct: 576 AIFLIWTWLTHLEKDFSIHYNQW 644
>TC233392
Length = 1145
Score = 111 bits (277), Expect = 1e-24
Identities = 60/204 (29%), Positives = 102/204 (49%), Gaps = 3/204 (1%)
Frame = -1
Query: 358 LQDNIQDKWRWLLDPILGYTVKGTYCFLT-NMEGQVTSGVGFDVWHRRVPSKVSLFAWRL 416
+Q + D W W +P Y+ + Y L ++EG+ G D+W ++P+K S+FAWRL
Sbjct: 674 IQQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIFAWRL 495
Query: 417 LQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCV 476
++DR+ T++NL RR V+ D+ C E H+F++C +W+ W+ V
Sbjct: 494 IRDRLPTKSNLHRRQVV-LEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVRSLGV 318
Query: 477 FQGSVTQHFIQFTNLAGMTRGSHDY--LKIIWLACVWAIWKERNNCVFNNLASDPLSIVE 534
+ QHF+Q + T GS Y K W+A W++WK RN +F N + + ++E
Sbjct: 317 SPINKRQHFLQHVH---GTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQFNGIKLLE 147
Query: 535 RVKLFSFLWLSSNVASFPFGFHDW 558
+ W+ + F ++ W
Sbjct: 146 DAVFLHWTWIRAMEKDFSMHYNQW 75
>CO986021
Length = 900
Score = 110 bits (274), Expect = 2e-24
Identities = 67/228 (29%), Positives = 105/228 (45%), Gaps = 3/228 (1%)
Frame = -1
Query: 334 WRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFL--TNMEGQ 391
WRR L E E ++ ++ I + +QD W DP Y+ K Y L N GQ
Sbjct: 873 WRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLLLPNNRPGQ 694
Query: 392 VTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGI-PETV 450
+S +W ++P + LF+WRL +DR++ R NL+RR+V A + CG E
Sbjct: 693 HSSNFKI-LWKLKIPPRAELFSWRLFRDRLSIRANLLRRHV--ALQDIMCPLCGNHQEEA 523
Query: 451 DHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACV 510
HLF C +W+ +W F HFIQF++ G R +H+ + W+A
Sbjct: 522 GHLFFHCRMTIGLWWESMNWTRTLGAFLDDPAAHFIQFSDGFGAQR-NHNRRCLWWIALT 346
Query: 511 WAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSSNVASFPFGFHDW 558
IW+ RN+ +F P +++ ++ WL + F F+ W
Sbjct: 345 STIWQHRNSLLFKGTPFQPPKVMDDALFHAWTWLKATEKGFNIPFNQW 202
>CO984521
Length = 716
Score = 108 bits (269), Expect = 8e-24
Identities = 60/208 (28%), Positives = 102/208 (48%), Gaps = 2/208 (0%)
Frame = -2
Query: 353 LNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNME-GQVTSGVGFDVWHRRVPSKVSL 411
L ++ + D+W+W +P Y+ K Y L ++ G+ G ++W RVP KV++
Sbjct: 679 LEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALHHVTVGEEQDGKFKELWKLRVPLKVAI 500
Query: 412 FAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWL 471
FAWRL+QD++ T+ NL R+ ++ + C + ET HLF C+ +W+ W+
Sbjct: 499 FAWRLIQDKLPTKANL-RKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWESQSWV 323
Query: 472 GIPCVFQGSVTQHFIQFTNLAGMTRG-SHDYLKIIWLACVWAIWKERNNCVFNNLASDPL 530
+ VF QHF Q ++ G + G + W A ++IWK RN+ +F+N D
Sbjct: 322 NMMGVFPYQPDQHFSQ--HIFGASVGLQGKRWQWWWFALTYSIWKHRNSIIFSNANFDAH 149
Query: 531 SIVERVKLFSFLWLSSNVASFPFGFHDW 558
+++ + WL F F+ W
Sbjct: 148 KLMDDAVFILWTWLRCFEKDFSLHFNQW 65
>CO979823
Length = 853
Score = 107 bits (266), Expect = 2e-23
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 2/198 (1%)
Frame = -2
Query: 363 QDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGF-DVWHRRVPSKVSLFAWRLLQDRV 421
+DKW W +P Y+ K Y L + F ++W ++P+K ++FAWRL++DR+
Sbjct: 705 EDKWLWKPEPGGHYSTKSGYHVLWGELTEEIQDADFAEIWKLKIPTKAAVFAWRLVRDRL 526
Query: 422 ATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSV 481
T++NL RR V+ D C I E HLF CT +W+ W+ + +
Sbjct: 525 PTKSNLRRRQVM-VQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWESMSWVNLKTAMPQTP 349
Query: 482 TQHFIQF-TNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFS 540
QHF+Q+ T++A + K W+A W IW+ RN VF N ++E L
Sbjct: 348 RQHFLQYGTDIADGLKSKR--WKCWWIALTWTIWQHRNKVVFQNATFHGNKVLEDALLLL 175
Query: 541 FLWLSSNVASFPFGFHDW 558
+ W + F F+ W
Sbjct: 174 WSWFKALEKDFNLHFNQW 121
>TC222857
Length = 657
Score = 106 bits (265), Expect = 2e-23
Identities = 56/162 (34%), Positives = 85/162 (51%), Gaps = 2/162 (1%)
Frame = -3
Query: 399 DVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCT 458
D+W ++PSK +FAWRLL DR+ T+ NL R V Q +D C + ET H+FI C
Sbjct: 616 DLWKIKIPSKFLMFAWRLLWDRLPTKANLRARQV-QISDLTCPFCRRVEETASHMFIHCI 440
Query: 459 SFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNL--AGMTRGSHDYLKIIWLACVWAIWKE 516
+W+ +W+ + S+T HF+QF++L AG+ + W+A W+IW+
Sbjct: 439 KTQPIWWETMNWINMQGPLPWSITDHFMQFSSLKEAGIRSRRWQWW---WMAVTWSIWQL 269
Query: 517 RNNCVFNNLASDPLSIVERVKLFSFLWLSSNVASFPFGFHDW 558
RN+ VF+N D +VE + WL + F F+ W
Sbjct: 268 RNSIVFSNATFDGNKLVEDASFLLWTWLHNLEKDFSLHFNQW 143
>AI496436
Length = 414
Score = 104 bits (260), Expect = 9e-23
Identities = 50/117 (42%), Positives = 72/117 (60%)
Frame = +1
Query: 50 VLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKL 109
+L E SGLK+NF KS + S W EAA LN +PF+YLG+PIG + R
Sbjct: 4 ILRCFELSSGLKINFAKSQFGTICKSDIWRKEAADYLNSSVLSMPFVYLGIPIGANSRHS 183
Query: 110 CFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIE 166
W+PV+ + +L+SW KY+S GGR+ L+ SVL++LP+Y LSFF+ P ++ +
Sbjct: 184 DVWEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKVVDKAD 354
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 103 bits (258), Expect = 2e-22
Identities = 47/117 (40%), Positives = 70/117 (59%)
Frame = +2
Query: 134 GGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCL 193
GGR+ L+KSVLS+LP+ LSFFK P I+ + ++ ++ WGG + +I WVKW +C
Sbjct: 5 GGRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICN 184
Query: 194 PMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHS 250
P GGLG++ L FN +L G+W W L + N LW R+ + + V EG + +
Sbjct: 185 PKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARLAEQ*S*RVAFFVVEGSQET 355
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 103 bits (256), Expect = 3e-22
Identities = 58/153 (37%), Positives = 86/153 (55%), Gaps = 2/153 (1%)
Frame = +2
Query: 153 SFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSL 212
SFF P II+ +ES+ ++ WGG SRKIAWV W +VCLP ++GGLG++ L FN +L
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 213 LGKWCWRLLVDKNGLWYRVLKARYGEIGGMVK-EGGRHSSRWWRMICNVRDGRGLLVGKW 271
LGKW W L + W +VL+++YG + + G S WW+ + + + + K
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLK- 361
Query: 272 FDDNIRRVVGNGRNTFFWYDNWLG-DVPLKFQF 303
+ I + VG G FW D W D+ L+ +F
Sbjct: 362 -RETIWK-VGGGDRIKFWEDLWTNTDLSLRDKF 454
>TC222789
Length = 954
Score = 101 bits (252), Expect = 8e-22
Identities = 60/189 (31%), Positives = 90/189 (46%), Gaps = 5/189 (2%)
Frame = +2
Query: 375 GYTVKGTYCFLTNMEGQVTSGV---GFD-VWHRRVPSKVSLFAWRLLQDRVATRTNLVRR 430
G+ + Y +L M G G+ F+ +W +VP K +FAWRLL+DR+ T+ NL RR
Sbjct: 281 GFCTRVNYAYL--MRGAGVEGIKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRR 454
Query: 431 YVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTN 490
+ Q D C + E HLF C+ +W+ W+ I QHF+Q
Sbjct: 455 QI-QVMDRSCPFCRNVEEDAGHLFFHCSKIIPIWWESLSWVNISGALPKDPRQHFLQHDL 631
Query: 491 L-AGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSSNVA 549
+ AG R + K WLA W IW++RN +F N + D +++ + WLS+
Sbjct: 632 IMAGGIRTTR--WKCWWLAVTWTIWQQRNKIIFFNDSFDANKLIDEAAFLLWTWLSNLEK 805
Query: 550 SFPFGFHDW 558
F F+ W
Sbjct: 806 DFSVNFNQW 832
>CA851073
Length = 633
Score = 101 bits (252), Expect = 8e-22
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 2/205 (0%)
Frame = +1
Query: 356 IVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGFD-VWHRRVPSKVSLFAW 414
I +Q ++QD W DP Y+ K Y L V+ F +W ++P + ++F+W
Sbjct: 4 IQIQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSW 183
Query: 415 RLLQDRVATRTNLVRRYVLQAADNFCVGGCGI-PETVDHLFIQCTSFGRVWYLVCHWLGI 473
RL++DR+ TR NL+RR V +N C CG E DHLF C +W+ W I
Sbjct: 184 RLIKDRLPTRHNLLRRNV-SIQENEC-PLCGYEQEEADHLFFNCKMTRGLWWESMRWNQI 357
Query: 474 PCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIV 533
S HF+QF + G R +H W+A +IWK RN +F +P ++
Sbjct: 358 VGPLSVSPASHFVQFCDGFGAGR-NHTRWCGWWIALTSSIWKHRNLLIFQGNQFEPSKVM 534
Query: 534 ERVKLFSFLWLSSNVASFPFGFHDW 558
+ ++ WL +F F+ W
Sbjct: 535 DDALFLAWSWLKVREKNFNTPFNHW 609
>TC221865
Length = 1045
Score = 101 bits (251), Expect = 1e-21
Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 6/270 (2%)
Frame = -3
Query: 280 VGNGRNTFFWYDNWLGD-VPLKFQFSRLFDLAVNKECSVEDM---VRAGWEEGGGGWVWR 335
VG G FW D +G+ L ++ R++ ++ ++ ++ + WE + WR
Sbjct: 923 VGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWE---WKFQWR 753
Query: 336 RRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSG 395
R L E + + ++ + ++ D W W +P Y+ + Y + + + +
Sbjct: 752 RPLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQHEAAKANTD 573
Query: 396 VGFD-VWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLF 454
F+ +W ++P+K ++FA RL++DR+ T+ NL RR V Q C+ E HLF
Sbjct: 572 PAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQV-QLNGTLCLFCRNYEEEASHLF 396
Query: 455 IQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFT-NLAGMTRGSHDYLKIIWLACVWAI 513
CT VW+ W+ F + HF+Q + L G+ + ++ K W+A + I
Sbjct: 395 FSCTKTQPVWWESLSWINTSGAFSANPRHHFLQHSFGLLGLKQ--YNR*KCWWVALTFTI 222
Query: 514 WKERNNCVFNNLASDPLSIVERVKLFSFLW 543
W+ RN +F+N + ++E + W
Sbjct: 221 WQHRNRTIFSNEPFNGSKMMEDAMFLVWSW 132
>TC211809
Length = 895
Score = 98.2 bits (243), Expect(2) = 1e-21
Identities = 58/184 (31%), Positives = 87/184 (46%), Gaps = 1/184 (0%)
Frame = +2
Query: 376 YTVKGTYCFLTNMEGQVTSGVGF-DVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQ 434
Y+ K Y L G+ + D+W+ ++PSK +FAWRL++DR+ T TNL R V +
Sbjct: 206 YSTKSAYRLLMEATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNLRVRQV-E 382
Query: 435 AADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAGM 494
D+ C E HLF CT +W+ W+ F + HF+Q N +
Sbjct: 383 LNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFLQHDNRSAG 562
Query: 495 TRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSSNVASFPFG 554
+ + K +W+A W IWK RN VF+N + D ++E L ++ WL F
Sbjct: 563 GVXARRW-KCLWVALTWVIWKHRNGVVFHNHSFDGSKVMEDAILLTWSWLKVMEKGFTGP 739
Query: 555 FHDW 558
F W
Sbjct: 740 FSFW 751
Score = 23.5 bits (49), Expect(2) = 1e-21
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +1
Query: 324 GWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPI 373
GWE + WRR L E E + L + + + D W W D +
Sbjct: 58 GWE*N---FSWRRPLFDNEIGMAAEFLEELAQVTIHQDRPDVWVWKADSV 198
>TC213061
Length = 823
Score = 98.6 bits (244), Expect = 7e-21
Identities = 61/239 (25%), Positives = 106/239 (43%), Gaps = 1/239 (0%)
Frame = +2
Query: 321 VRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKG 380
+ GWE + WRR L E E + + + ++ +I+D+W W + Y +
Sbjct: 8 IETGWE---WQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARS 178
Query: 381 TYCFLTNMEGQVTSGVGF-DVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNF 439
Y + + F ++W +VP KV++FAWRLL+D + TR NL RR ++ +
Sbjct: 179 AYRVIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNL-RRKRVELHEYV 355
Query: 440 CVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAGMTRGSH 499
C + E+ HLF C+ +W+ W+ + F HF Q ++ +
Sbjct: 356 CPLCRSMDESASHLFFHCSKILPIWWESLSWVKLVGAFPHHPRHHFHQHSHEVYQGLQGN 535
Query: 500 DYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSSNVASFPFGFHDW 558
+ K WLA W IWK RN+ +F+N + +++ + W F ++ W
Sbjct: 536 RW-KWWWLALTWTIWKHRNDIIFSNATFNAHKVMDDAVFLIWTWFRHLENDFTSHYNQW 709
>TC231922
Length = 803
Score = 95.5 bits (236), Expect = 6e-20
Identities = 71/264 (26%), Positives = 114/264 (42%), Gaps = 6/264 (2%)
Frame = -3
Query: 251 SRWW---RMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGD-VPLKFQFSRL 306
S WW R + N D + N+ VG G FW D+WL + L+ ++++L
Sbjct: 777 SHWWKDLRRLYNQPDFHSI------HQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQL 616
Query: 307 FDLAVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKW 366
+ ++ ++ M + + WRRRL +E + +N ++ I +Q+ D
Sbjct: 615 YTISRQ*NLTISKMGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSM 436
Query: 367 RWLLDPILGYTVKGTYCFLTNMEGQVTSGVGFDV-WHRRVPSKVSLFAWRLLQDRVATRT 425
W D Y+ K Y L S F + WH ++P + ++F+WRL DR+ TR
Sbjct: 435 FWKADSSGVYSTKSAYRLLMPSISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRG 256
Query: 426 NLVRRYVLQAADNFC-VGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQH 484
NL RR + D C + GC E HLF C +W+ W+ + H
Sbjct: 255 NLSRRSI-PIQDIMCPLCGCQ-HEEAGHLFFHCKMTKGLWWESMRWIRVIGALPADPASH 82
Query: 485 FIQFTNLAGMTRGSHDYLKIIWLA 508
FIQF + T +H + W+A
Sbjct: 81 FIQFCDGFAAT-SNHSRRGMWWIA 13
>TC233956
Length = 757
Score = 90.9 bits (224), Expect = 1e-18
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 1/210 (0%)
Frame = +2
Query: 350 VNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGFD-VWHRRVPSK 408
++ ++ I L +N D W W + + K Y + + +GF +W +VP K
Sbjct: 17 IDHIHEIRLNNNFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKKLWEIKVPPK 196
Query: 409 VSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVC 468
F WRLL DR+ T+ NL++R + Q D+ C ET HLF C +W+
Sbjct: 197 ALSFVWRLLWDRLPTKDNLIKRQI-QVEDDLCPFCHSQSETASHLFFTCGKIMPLWWEFL 373
Query: 469 HWLGIPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASD 528
W+ VF +F+Q + A ++ S+ + W+A +IW+ RN+ +F N D
Sbjct: 374 SWVKEDKVFHCRPMDNFLQHYSSAA-SKVSNTRRTMWWIAVTNSIWRLRNDIIFQNQTVD 550
Query: 529 PLSIVERVKLFSFLWLSSNVASFPFGFHDW 558
+ + + WL +F ++ W
Sbjct: 551 ITRLTDSTLFLLWTWLRGWERNFQIPYYCW 640
>AW757033
Length = 441
Score = 90.1 bits (222), Expect = 2e-18
Identities = 45/116 (38%), Positives = 70/116 (59%)
Frame = -2
Query: 1 MMKTSVLSNLFQPYGVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGL 60
+M+ +V N ++ + VG + + +S LQ+ADDT+ GE + NVR I+ +L E SGL
Sbjct: 350 LMREAVARNHYKSFAVG-KYKKPVSILQYADDTIFFGEATMENVRVIKTILRGFELASGL 174
Query: 61 KVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVL 116
K+NF KS +++ W EAA +NC +PF YLG+PIG + R+ W P++
Sbjct: 173 KINFAKSRFGAISVPD*WRKEAAEFMNCSLLSLPFSYLGIPIGANPRRRETWDPII 6
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.142 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,167,898
Number of Sequences: 63676
Number of extensions: 667348
Number of successful extensions: 4950
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 4737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4858
length of query: 569
length of database: 12,639,632
effective HSP length: 102
effective length of query: 467
effective length of database: 6,144,680
effective search space: 2869565560
effective search space used: 2869565560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC148755.5