BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148653.1 - phase: 0
(693 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 365 e-101
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 283 1e-76
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 231 1e-75
AW184779 105 8e-47
BI498328 119 6e-27
BQ628592 110 2e-24
BI316922 100 4e-21
NP595172 polyprotein [Glycine max] 94 2e-19
BE804087 88 1e-17
BI321666 81 2e-15
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 74 2e-13
TC211815 51 3e-11
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 48 1e-10
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (... 61 1e-09
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 60 3e-09
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 54 2e-07
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 54 2e-07
TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 54 3e-07
BI424213 46 6e-05
BQ299538 36 0.065
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 365 bits (937), Expect = e-101
Identities = 167/266 (62%), Positives = 210/266 (78%)
Frame = +1
Query: 248 NRWNEVPLIHIRHLERPAHVFAIEEVVDDKPWFHDIKCFLQRQEYPLGASNKDKKTLRRL 307
N ++P I +PAH +EE D KPW+ DIK ++ +EY ++ DK+TLRRL
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQVEEERDGKPWYFDIKRYVISKEYLPEIADNDKRTLRRL 225
Query: 308 SGNFFLNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYY 367
+ FF++G ILYKRN DM LRCVD EA+ ++ E+HEGSFGTH++G MA+K+LRAGYY
Sbjct: 226 AAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMARKILRAGYY 405
Query: 368 WMTMEADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGH 427
W+TME+DC H ++C+KCQ +AD ++ PP LNV+SSPWPFSMWGID+IG IEPKASNGH
Sbjct: 406 WLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAIEPKASNGH 585
Query: 428 RFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKE 487
RFILVAIDYFTKWVEAASY +V + VVV+FIK IICRYG+P +IITDNGTNLNNKMM E
Sbjct: 586 RFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTNLNNKMMGE 765
Query: 488 LCDDFKIEHHNSSPYRPQMNGAVEAA 513
+C++FKI+HHN +PYRP+MN AVE A
Sbjct: 766 ICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 283 bits (725), Expect = 1e-76
Identities = 134/182 (73%), Positives = 157/182 (85%)
Frame = +1
Query: 511 EAANKNIKKIIQKMVVTYKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVE 570
EAANKNIKKIIQKM V+YKDWHEMLPFALHGYRTS+RTSTGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 571 IPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFK 630
+PS+R+L E+ L E+EW Q+RYDQLNLIE KR++A+ HG+LYQ+RMK AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 631 EGDLVLKKILTFQPDSRGKWTPNYEGPYVVKKAYSGGAMTLQTMDGEELQRPVNTDAVKK 690
EGDLVLKK+ D RGKW PNYEGP+VVK+A+SGGA+ L MDGEEL P+N+D VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 691 YF 692
Y+
Sbjct: 541 YY 546
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 231 bits (588), Expect(2) = 1e-75
Identities = 108/199 (54%), Positives = 145/199 (72%)
Frame = +2
Query: 170 IEEAIDLRIKNLDIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPR 229
++ AID +K L +YGDSALVI+Q+ GE ETR P L+PY+ Y + L FF+++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 230 DENQMADALATLSSMYQVNRWNEVPLIHIRHLERPAHVFAIEEVVDDKPWFHDIKCFLQR 289
+ENQMADALATL SM+Q+ ++P I R RPAH +EE D KPW+ DIK +++
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEERDGKPWYFDIKRYVES 565
Query: 290 QEYPLGASNKDKKTLRRLSGNFFLNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFG 349
+EYPL AS+ DK+ RRL+ FF++G ILYKRN DMVLL CV+ E + ++ E+HEGSFG
Sbjct: 566 KEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFG 745
Query: 350 THSSGPTMAKKMLRAGYYW 368
THS+G MA+K+LRAGYYW
Sbjct: 746 THSNGHAMARKILRAGYYW 802
Score = 71.6 bits (174), Expect(2) = 1e-75
Identities = 37/75 (49%), Positives = 47/75 (62%)
Frame = +1
Query: 94 EEIMYLKMKDCDEPLLGEGPDPESRWGLIFDGAVNVYGSGIGAIIVTPEGAHIPFTARLT 153
E+IM L + DE +W + FD A NV G G+GAI+V+P+ IPFT RL
Sbjct: 1 EDIMALFEEKLDED--------RDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLG 156
Query: 154 FDCTNNIAEYEACIM 168
FDCTNN+AEYEAC +
Sbjct: 157 FDCTNNMAEYEACAL 201
>AW184779
Length = 432
Score = 105 bits (263), Expect(3) = 8e-47
Identities = 46/74 (62%), Positives = 60/74 (80%)
Frame = +1
Query: 313 LNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTME 372
L+ +ILYKRN DMVLLRCVD EA+ ++ E+HEGSFGTH++ MA+K+LR GYYW+TME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 373 ADCYKHAKRCYKCQ 386
+DC H +C+KCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 85.5 bits (210), Expect(3) = 8e-47
Identities = 38/47 (80%), Positives = 43/47 (90%)
Frame = +3
Query: 410 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVK 456
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SYA+VT+ VV++
Sbjct: 291 MWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
Score = 35.8 bits (81), Expect(3) = 8e-47
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 386 QIYADRIHVPPTALNVLSSPWPF 408
Q +AD ++ PP LNVL++PWP+
Sbjct: 224 QTFADNVNAPPIPLNVLAAPWPY 292
>BI498328
Length = 335
Score = 119 bits (297), Expect = 6e-27
Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Frame = +1
Query: 63 SQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYL-KMKDCDEPLLGEGPDPESRWGL 121
+QKA+KGS LAD+LA P++ Y+P+ +FPDE+IM L + K E + ++W +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIV 159
Query: 122 IFDGAVNVYGSGIGAIIVTPEGAHIPFTARLTFDCTNNIAEYEACIMGIEEAIDLRIK 179
FDGA N G G+GA++V+P+ IPFTARL FDCTNN+AEYEAC +G++ AID +K
Sbjct: 160 CFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>BQ628592
Length = 423
Score = 110 bits (275), Expect = 2e-24
Identities = 48/59 (81%), Positives = 55/59 (92%)
Frame = -3
Query: 1 MLEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDI 59
MLE+TCC L WA+ RLR YM+SHTTWLISKMDP+KYIFEKPALTGRIARWQ+LLSE++I
Sbjct: 178 MLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFNI 2
>BI316922
Length = 405
Score = 99.8 bits (247), Expect = 4e-21
Identities = 48/135 (35%), Positives = 81/135 (59%)
Frame = +3
Query: 342 EIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNV 401
E+H G G HS M ++LR GYY TM C ++ K+C +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 402 LSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNH 461
+ +PWPF++ G+D++ R P + +++LV ID FTKW+E A ++ V KF+ +
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 462 IICRYGVPSRIITDN 476
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 94.4 bits (233), Expect = 2e-19
Identities = 89/335 (26%), Positives = 139/335 (40%), Gaps = 13/335 (3%)
Frame = +1
Query: 339 LMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTA 398
++ E H G H+ G T L+A +YW M+ D + ++C CQ +P
Sbjct: 3220 ILQEYHSSPIGGHA-GITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGL 3396
Query: 399 LNVLSSPWPFSMW---GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY-ANVTKQVV 454
L L P P +W +D I + S G I+V ID TK+ A+ +VV
Sbjct: 3397 LQPL--PIPQQVWEDVAMDFITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVV 3564
Query: 455 VKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHN---SSPYRPQMNGAVE 511
+ +HI+ +G+P I++D + + L FK++ SS Y PQ +G E
Sbjct: 3565 AEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSE 3735
Query: 512 AANKNIKKIIQKMVVTY-KDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVE 570
NK ++ ++ + K W + LP+A Y T+ S G TPF +YG E
Sbjct: 3736 VLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGRE-------- 3891
Query: 571 IPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFK 630
P + + V+ + + + K L Q KR DKK F+
Sbjct: 3892 -PPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQA---DKKRLDVSFQ 4059
Query: 631 EGDLVLKKILTFQPDS-----RGKWTPNYEGPYVV 660
GD VL K+ ++ S K + Y GP+ V
Sbjct: 4060 IGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKV 4164
>BE804087
Length = 160
Score = 87.8 bits (216), Expect = 1e-17
Identities = 42/53 (79%), Positives = 45/53 (84%)
Frame = +2
Query: 511 EAANKNIKKIIQKMVVTYKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEA 563
EAANKNIKK I KM V+YKDWHEM FALH YRT +RTSTGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 80.9 bits (198), Expect = 2e-15
Identities = 43/126 (34%), Positives = 67/126 (53%)
Frame = +2
Query: 357 MAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMI 416
++ +L++ +Y ++ D Y HA+ C KCQ L+ + F WGID +
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFV 181
Query: 417 GRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDN 476
G P SN +ILV +DY +KWVEA + ++V+KF+K I R GVP +I +
Sbjct: 182 GPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNG 355
Query: 477 GTNLNN 482
G++L N
Sbjct: 356 GSHLCN 373
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 73.9 bits (180), Expect = 2e-13
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = -3
Query: 485 MKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVV-TYKDWHEMLPFALHGYR 543
M L + + H S+PY PQ NG E +N+ IK+I++K+V + KDW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 544 TSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRM 603
T+ + G +P+ +V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 604 SA 605
A
Sbjct: 16 EA 11
>TC211815
Length = 704
Score = 50.8 bits (120), Expect(2) = 3e-11
Identities = 40/146 (27%), Positives = 72/146 (48%)
Frame = +2
Query: 547 RTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSAL 606
+++T TPF L+YG+ +LPIEV + AE+ E +Q L+LI++ R +
Sbjct: 230 QSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQI---DLDLIKQVREDTV 400
Query: 607 CHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILTFQPDSRGKWTPNYEGPYVVKKAYSG 666
+++RM F+ K+ G + + + R K+T N EGP+ ++
Sbjct: 401 IMT*AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKN 580
Query: 667 GAMTLQTMDGEELQRPVNTDAVKKYF 692
GA L+ + G+ + R N+ +K Y+
Sbjct: 581 GAYKLEELSGKVVLRIWNSMHLKVYY 658
Score = 35.8 bits (81), Expect(2) = 3e-11
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 475 DNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMV 525
DNG N+ + E I+H +S PQ N EAANK I ++K++
Sbjct: 3 DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLL 155
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 47.8 bits (112), Expect(2) = 1e-10
Identities = 22/81 (27%), Positives = 43/81 (52%)
Frame = +3
Query: 452 QVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVE 511
++V+KF+K +I R+G+P +I+D G++ + ++ + H + Y PQ NG +
Sbjct: 12 KIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNGQAK 191
Query: 512 AANKNIKKIIQKMVVTYKDWH 532
+N + + +K K WH
Sbjct: 192 VSNIHKENS*EK-----KMWH 239
Score = 37.0 bits (84), Expect(2) = 1e-10
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +2
Query: 529 KDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVE 570
KDW L AL +T+ +T G TPF +VY LP+E++
Sbjct: 248 KDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELK 373
>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
Length = 482
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/70 (42%), Positives = 42/70 (59%), Gaps = 1/70 (1%)
Frame = -3
Query: 502 YRPQMNGAVEAANKNIKKIIQKMVVTY-KDWHEMLPFALHGYRTSIRTSTGATPFSLVYG 560
Y PQ NG E +NK IK++++ +VV+ KDW L A YR + +T G +PF LVYG
Sbjct: 234 YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55
Query: 561 MEAVLPIEVE 570
L +E+E
Sbjct: 54 KACHLSVELE 25
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 60.1 bits (144), Expect = 3e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +1
Query: 157 TNNIAEYEACIMGIEEAIDLRIKNLDIYGDSALVINQITGEWETRHPGLVPYKDYARRLL 216
TNN AEY A I+G++ A+ + I GDS LV QI G W+ ++ L + A+ L
Sbjct: 64 TNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELK 243
Query: 217 TFFNKVELHHIPRDENQMADALATLS 242
F+ ++ H+ R+ N ADA A L+
Sbjct: 244 DKFSSFQISHVLRNFNSDADAQANLA 321
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 53.9 bits (128), Expect = 2e-07
Identities = 44/186 (23%), Positives = 83/186 (43%), Gaps = 7/186 (3%)
Frame = +1
Query: 382 CYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK-- 439
C +CQI ++ + L ++ + +D++G ++ ++ G R+ V +D F++
Sbjct: 2179 CGECQI-GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 2355
Query: 440 WVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNS 499
WV + T +V + + V RI +D+G N E C I H S
Sbjct: 2356 WVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFS 2535
Query: 500 SPYRPQMNGAVEAANKNIKKIIQKMV----VTYKDWHEMLPFALHGY-RTSIRTSTGATP 554
+ PQ NG VE N+ +++ + M+ + Y W E + A + + R ++R T T
Sbjct: 2536 AAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 2715
Query: 555 FSLVYG 560
+ + G
Sbjct: 2716 YEIWKG 2733
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 53.9 bits (128), Expect = 2e-07
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Frame = +1
Query: 382 CYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK-- 439
C +CQI ++ + L ++ + +D++G ++ ++ G R+ V +D F++
Sbjct: 2182 CGECQI-GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 2358
Query: 440 WV----EAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIE 495
WV E + V K++ ++ + + V RI +D+G N E C I
Sbjct: 2359 WVNFIREKSDTFEVFKELSLRLQRE----KDCVIKRIRSDHGREFENSKFTEFCTSEGIT 2526
Query: 496 HHNSSPYRPQMNGAVEAANKNIKKIIQKMV----VTYKDWHEMLPFALHGY-RTSIRTST 550
H S+ PQ NG VE N+ +++ + M+ + Y W E + A + + R ++R T
Sbjct: 2527 HEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGT 2706
Query: 551 GATPFSLVYG 560
T + + G
Sbjct: 2707 PTTLYEIWKG 2736
>TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (12%)
Length = 561
Score = 53.5 bits (127), Expect = 3e-07
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +1
Query: 161 AEYEACIMGIEEAIDLRIKNLDIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFN 220
AEY + I+G+ K + + GDS LV NQI G W+ ++ + A+ L F
Sbjct: 1 AEYRSLILGLXHXXKKGYKXIIVQGDSLLVCNQIQGLWKIKNQNMGTLCXEAKELKDKFL 180
Query: 221 KVELHHIPRDENQMADALATLS 242
++ HIPR+ N ADA A L+
Sbjct: 181 SFKISHIPREYNSEADAQANLA 246
>BI424213
Length = 426
Score = 45.8 bits (107), Expect = 6e-05
Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +1
Query: 499 SSPYRPQMNGAVEAANKNIKKIIQKMVV-TYKDWHEMLPFALHGYRTSIRTSTGATPFSL 557
S+ PQ +G + N+++ +++ ++ +K W E LP Y + +T +PF +
Sbjct: 55 STTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEFAYNRGVHRTTKQSPFEV 234
Query: 558 VYGMEAVLPIE-VEIPSIRVLMEAE-LSEAEWVQSRYDQL-NLIEEK 601
VYG + P++ + +P + E S +E+V+ ++++ N IE +
Sbjct: 235 VYGFNPLTPLDLIPLPLDTSFIHKEGESRSEFVKKMHERVKNQIENQ 375
>BQ299538
Length = 426
Score = 35.8 bits (81), Expect = 0.065
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 5/48 (10%)
Frame = +3
Query: 533 EMLPFALHGYRTSIRTSTGATPFSLVYG-----MEAVLPIEVEIPSIR 575
+ L +A + Y T+ STG TPF +VYG + LP EV + ++R
Sbjct: 261 QWLSWAEYWYNTNFHASTGTTPFEVVYGRKPPVLNRFLPGEVRVEAVR 404
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,356,338
Number of Sequences: 63676
Number of extensions: 461128
Number of successful extensions: 1954
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of query: 693
length of database: 12,639,632
effective HSP length: 104
effective length of query: 589
effective length of database: 6,017,328
effective search space: 3544206192
effective search space used: 3544206192
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC148653.1