BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148652.2 - phase: 0 /pseudo
(1145 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 364 e-100
CF922488 319 4e-87
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 274 1e-73
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 214 3e-69
NP595172 polyprotein [Glycine max] 221 1e-57
NP334778 reverse transcriptase [Glycine max] 210 3e-54
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 196 4e-50
BQ628592 102 3e-46
NP395547 reverse transcriptase [Glycine max] 177 2e-44
NP395548 reverse transcriptase [Glycine max] 169 6e-42
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 166 5e-41
BI498328 120 4e-27
AW184779 114 3e-25
BG839293 108 1e-23
BI316922 101 2e-21
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 66 9e-16
BE804087 82 1e-15
BI321666 82 1e-15
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 77 3e-14
BE802896 68 2e-11
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 364 bits (935), Expect = e-100
Identities = 166/274 (60%), Positives = 209/274 (75%)
Frame = +1
Query: 693 NHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNK 752
N D+P I+ +P+H +E+ D +PWY+D K++++S+EY P ++
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQVEEER--------DGKPWYFDIKRYVISKEYLPEIADN 201
Query: 753 DKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 812
DK+TLRRLA F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 813 KLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRI 872
K+LRAGYYW+TME DC H RKCHKCQ +AD ++ PPH LNV+SSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 873 EPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTN 932
EPKASNGHRFILVAIDY+TKWVEAASY +V + VV +FI+ IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 933 LNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAA 966
LNN ++ +CEEFKI+HH +PYRP+MN AVE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>CF922488
Length = 741
Score = 319 bits (818), Expect = 4e-87
Identities = 163/246 (66%), Positives = 190/246 (76%)
Frame = +3
Query: 149 VPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 208
V K+DGKV MCVD+RDL ASPKD FPLPHI+VLVDNT FSFMDGFSGYNQIK++P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 209 EDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKD 268
ED EKT+FIT GTFCYK M FGL N GATY R M LF DM+HKE+EVY+DDMIVKS+
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 269 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 328
EE+H+ L K+F RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 329 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLL 388
P TEKQV+GFLGRLNYI RFIS + ATC P+F LL KNQ + W+ +C AF+ IK L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 389 EPPILV 394
P +LV
Sbjct: 723 NPHVLV 740
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 274 bits (701), Expect = 1e-73
Identities = 127/182 (69%), Positives = 157/182 (85%)
Frame = +1
Query: 964 EAANKNIQKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
EAANKNI+KI+QKM +YKDWHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
+PSLR++ E+ L E+EW Q+RYDQLNL+E KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVLK+ D RGKW PNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 1144 YF 1145
Y+
Sbjct: 541 YY 546
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 214 bits (544), Expect(2) = 3e-69
Identities = 100/207 (48%), Positives = 142/207 (68%)
Frame = +2
Query: 615 IEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPR 674
++ AID +K L +YGDSALVI+Q++GE ET LIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 675 DENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRPWYY 734
+ENQMADAL T+ SMF++ D+P I+ + RP+H +E+ D +PWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEER--------DGKPWYF 541
Query: 735 DTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 794
D K+++ S+EYP AS+ DK+ RRLA F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 795 DVHDGTFGTHATGHTMSRKLLRAGYYW 821
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 68.2 bits (165), Expect(2) = 3e-69
Identities = 37/73 (50%), Positives = 45/73 (60%)
Frame = +1
Query: 539 EDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARIL 598
EDIM L + +E D D KW + FD N G G+GA++VSP IPFT R+
Sbjct: 1 EDIMALFEEKLDE-------DRD-KWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLG 156
Query: 599 FECTNNMAEYEAC 611
F+CTNNMAEYEAC
Sbjct: 157 FDCTNNMAEYEAC 195
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 221 bits (564), Expect = 1e-57
Identities = 148/454 (32%), Positives = 229/454 (49%), Gaps = 1/454 (0%)
Frame = +1
Query: 70 LLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQI 129
LL Y +FA P + +H IP K PV+ + R +I+ +Q+ +
Sbjct: 1693 LLHTYAQVFAVPASLPPQREQ---DHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEML 1863
Query: 130 DAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQS 189
G + P + I+ V KKDG R C D+R L + KD+FP+P +D L+D +
Sbjct: 1864 VQGIIQPSNSP-FSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGA 2040
Query: 190 KVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHD 249
+ FS +D SGY+QI + PEDREKT+F T G + + VMPFGL NA AT+ M +F
Sbjct: 2041 QYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQF 2220
Query: 250 MIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIV 309
+ K V V+ DD+++ S + H+++L + + L++++L +KC+FG LG V
Sbjct: 2221 ALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKV 2400
Query: 310 SQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQP 369
S G+ ++ KV+A+ + P P KQ+RGFLG Y RFI GP+ LL+K+
Sbjct: 2401 SGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDS- 2577
Query: 370 IVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKEHA 429
+WN+E + AF +K + E P+L P +P I+ VG VLGQ H
Sbjct: 2578 FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNG------HP 2739
Query: 430 IYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVT 489
I Y SKK + + + A+ A + RHYL+ + + + +K + ++ T
Sbjct: 2740 IAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQT 2919
Query: 490 RKIARWQMLLSEYDIVFKAQ-KAIKGSILADHLA 522
+ W YD FK + K K + AD L+
Sbjct: 2920 PEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
Score = 96.7 bits (239), Expect = 5e-20
Identities = 121/478 (25%), Positives = 200/478 (41%), Gaps = 6/478 (1%)
Frame = +1
Query: 544 LKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTN 603
LK E P++ PD + + D A G G+GAV+ GH I + ++ L
Sbjct: 2617 LKKAMTEAPVLSL---PDFSQPFILETD--ASGIGVGAVL-GQNGHPIAYFSKKLAPRMQ 2778
Query: 604 NMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRD-YARRLLT 662
+ Y + I EA+ + +H + + +Q + + P + + + L
Sbjct: 2779 KQSAYTRELLAITEALS-KFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLG 2955
Query: 663 YFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRA 722
Y K+E + P +NQ ADAL S MF + W++ H +E++ R
Sbjct: 2956 YDFKIE--YKPGKDNQAADAL---SRMFMLA-WSE------------PHSIFLEELRAR- 3078
Query: 723 DGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDILYKRNYDMVLLR 782
++ D KQ L Y GA A + + +LY + D V++
Sbjct: 3079 ---LISDP----HLKQ--LMETYKQGAD----------ASHYTVREGLLYWK--DRVVIP 3195
Query: 783 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYA 842
+E +++ + H G HA G T + L+A +YW M+ D + +KC CQ
Sbjct: 3196 A-EEEIVNKILQEYHSSPIGGHA-GITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAK 3369
Query: 843 DKIHVPPHALNVISSPWPFSMW---GIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASY 899
+P L + P P +W +D I + S G I+V ID TK+
Sbjct: 3370 SNNTLPAGLLQPL--PIPQQVWEDVAMDFITGLPN--SFGLSVIMVVIDRLTKYAHFIPL 3537
Query: 900 -ANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQ 958
A+ +VVA+ ++I+ +G+P I++D + Q L + +SS Y PQ
Sbjct: 3538 KADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQ 3717
Query: 959 MNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGME 1015
+G E NK ++ ++ + K W + LP+A Y T S G TPF +YG E
Sbjct: 3718 SDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGRE 3891
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 210 bits (534), Expect = 3e-54
Identities = 99/143 (69%), Positives = 116/143 (80%)
Frame = +3
Query: 157 RMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 216
RMCVD+RDL +ASPKDNFPLPHID+L+ N A +FSFMDGFSGYNQIKM+PED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 217 ITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYL 276
IT GTFCYKVM FGL N GATY R M LF DM+HKE+E YVD+MI KS+ EE+H+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 277 TKMFERLRKYKLRLNPNKCTFGV 299
+F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 196 bits (499), Expect = 4e-50
Identities = 94/133 (70%), Positives = 112/133 (83%)
Frame = +2
Query: 192 FSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMI 251
FSFMDGFSGYNQI M+ ED EKT+F+T GTF Y+VM FGL N GATY R M LFHDM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 252 HKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 311
HKE+EVYVDDMI KS+ E +H+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 312 KGIEVDPDKVRAI 324
KGIE+DP+KV+A+
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ628592
Length = 423
Score = 102 bits (255), Expect(2) = 3e-46
Identities = 43/61 (70%), Positives = 56/61 (91%)
Frame = -3
Query: 444 YTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYD 503
Y+MLE+TCC LVWA+ RLR Y+++HTTWLIS+MD +KYIFEKPA+T +IARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 504 I 504
I
Sbjct: 4 I 2
Score = 102 bits (254), Expect(2) = 3e-46
Identities = 46/76 (60%), Positives = 58/76 (75%)
Frame = -1
Query: 364 LRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDET 423
L KNQ I+WN Q AF+ IK L P +L+PPV GRP ++Y+++ DES+GCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 424 GKKEHAIYYLSKKFTD 439
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 177 bits (449), Expect = 2e-44
Identities = 93/252 (36%), Positives = 140/252 (54%), Gaps = 18/252 (7%)
Frame = +1
Query: 121 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 162
++ EV K ++AG + + WV+ + VPKK G RMC+D+
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 163 RDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GT 222
R L +A+ KD++PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 223 FCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFER 282
F Y+ MPFGL NA T+ R M +F DM+ K +EV++DD + L K+ +R
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 283 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 342
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 343 LNYISRFISHMT 354
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 169 bits (428), Expect = 6e-42
Identities = 88/252 (34%), Positives = 139/252 (54%), Gaps = 18/252 (7%)
Frame = +1
Query: 121 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 162
++ EV K ++ G + + WV+ ++ V KK+G ++C+D+
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 163 RDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GT 222
R L +A+ KD+FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 223 FCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFER 282
F Y+ +PFGL NA T+ M +F D++ K +EV++DD V E ++ L + +R
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 283 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 342
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 343 LNYISRFISHMT 354
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 166 bits (420), Expect = 5e-41
Identities = 77/152 (50%), Positives = 107/152 (69%), Gaps = 2/152 (1%)
Frame = +3
Query: 1 NFEFPVYEVEDEEGDDI--PYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAA 58
+FE + + EDE +D+ P E+ R++ E + + PHQEE EL++LG+ KRE+K+G
Sbjct: 864 DFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKREVKIGTG 1043
Query: 59 LEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMA 118
+ ++ ++ LLR+Y DIFAWSY+DMPGL IV+HR+P PE PV+QKLRR P+ +
Sbjct: 1044 ITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRRMKPETS 1223
Query: 119 LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVP 150
LKIK EV+K DAGFL YP+WVANIVP+P
Sbjct: 1224 LKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
>BI498328
Length = 335
Score = 120 bits (300), Expect = 4e-27
Identities = 63/117 (53%), Positives = 79/117 (66%), Gaps = 1/117 (0%)
Frame = +1
Query: 509 QKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYL-KSKDCEEPLIGEGPDPDSKWGLV 567
QKA+KGS LAD+LA PL Y+P+ +FPDEDIM L + K E + +KW +
Sbjct: 7 QKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIVC 162
Query: 568 FDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 624
FDG NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 163 FDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>AW184779
Length = 432
Score = 114 bits (284), Expect = 3e-25
Identities = 49/74 (66%), Positives = 60/74 (80%)
Frame = +1
Query: 766 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTME 825
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+TME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 826 HDCYQHARKCHKCQ 839
DC H KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 85.5 bits (210), Expect = 1e-16
Identities = 49/114 (42%), Positives = 61/114 (52%), Gaps = 22/114 (19%)
Frame = +3
Query: 818 GYYWMTMEHDCY-------------QHARKCHKCQIYADKIHVPPHALNVISSPWPF--- 861
G W T +H C+ R H C + VP ++ +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 862 ------SMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAK 909
MWGID+IG IEPKASNGH FILVAIDY+TKWVEA SYA+VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BG839293
Length = 781
Score = 108 bits (270), Expect = 1e-23
Identities = 49/110 (44%), Positives = 73/110 (65%), Gaps = 2/110 (1%)
Frame = +1
Query: 1 NFEFPVYEVEDEEGDDI--PYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAA 58
NFE + EDE +D+ P E+ R++ E + + PHQEE EL++LG KRE+K+G
Sbjct: 400 NFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGIGSGKREVKIGTG 579
Query: 59 LEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQ 108
+ ++ ++ LL++Y DIFAWSY+DMPGL IV+H++P PE PV+Q
Sbjct: 580 ITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECSPVKQ 729
>BI316922
Length = 405
Score = 101 bits (251), Expect = 2e-21
Identities = 47/135 (34%), Positives = 82/135 (59%)
Frame = +3
Query: 795 DVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNV 854
++H G G H+ M+ ++LR GYY TM C ++ +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 855 ISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNN 914
I +PWPF++ G+D++ R P + +++LV ID +TKW+E A ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 915 IICRYGVPSKIITDN 929
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 66.2 bits (160), Expect(2) = 9e-16
Identities = 43/171 (25%), Positives = 74/171 (43%)
Frame = +1
Query: 325 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIK 384
R P ++ +R F G ++ RF+ + + P+ +L++KN W ++ + AF +K
Sbjct: 88 RMAPTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLK 267
Query: 385 NYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 444
L + P+L P + + V VL Q H I Y S+K Y
Sbjct: 268 EKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG------HPIAYFSEKLHSATLNY 429
Query: 445 TMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARW 495
+K AL+ A + H+LV + S +KYI K + ++ A+W
Sbjct: 430 PTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 36.6 bits (83), Expect(2) = 9e-16
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 306 GFIVSQKGIEVDPDKVRAIREMPAP 330
GF+V + G+++DP+K++AI+E P P
Sbjct: 29 GFVVGRNGVQMDPEKIKAIQEWPPP 103
>BE804087
Length = 160
Score = 82.4 bits (202), Expect = 1e-15
Identities = 38/53 (71%), Positives = 44/53 (82%)
Frame = +2
Query: 964 EAANKNIQKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 1016
EAANKNI+K + KM +YKDWHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 82.0 bits (201), Expect = 1e-15
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 810 MSRKLLRAGYYWMTMEHDCYQHARKCHKCQ---IYADKIHVPPHALNVISSPWPFSMWGI 866
+S +L++ +Y ++ D Y HA+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 867 DMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKII 926
D +G P SN +ILV +DY +KWVEA + ++V KF++ I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 927 TDNGTNLNN 935
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 77.4 bits (189), Expect = 3e-14
Identities = 39/122 (31%), Positives = 72/122 (58%), Gaps = 1/122 (0%)
Frame = -3
Query: 938 VQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVT-TYKDWHEMLPYALHGYR 996
+ AL +++ + H +S+PY PQ NG E +N+ I++I++K+V + KDW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 997 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1056
T ++ G +P+ +V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 1057 DA 1058
+A
Sbjct: 16 EA 11
>BE802896
Length = 416
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/128 (31%), Positives = 62/128 (48%)
Frame = -2
Query: 339 FLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVE 398
FLG + RFI P+ LL+K +ND+C+ AFD +K L+ PI+ P
Sbjct: 412 FLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDW 233
Query: 399 GRPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAA 458
P + + ++G VL Q+ + K IYY S+ + YT EK A+V+A
Sbjct: 232 TAPFELMCDASNYALGVVLAQKID--KLPRVIYYSSRTLDAAQANYTTTEKELLAIVFAL 59
Query: 459 KRLRHYLV 466
++ YL+
Sbjct: 58 EKFHSYLL 35
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,424,939
Number of Sequences: 63676
Number of extensions: 724327
Number of successful extensions: 3379
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of query: 1145
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1037
effective length of database: 5,762,624
effective search space: 5975841088
effective search space used: 5975841088
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC148652.2