TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148651.6 + phase: 0 /pseudo
         (514 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232603 weakly similar to UP|Q39482 (Q39482) Legumin (Fragment)...    32  0.52
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript...    32  0.68
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase...    31  1.2
BM567708                                                               29  4.4
TC216027 homologue to UP|Q9ZSQ0 (Q9ZSQ0) Ethylene response senso...    28  9.9
TC217179 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (28%)    28  9.9

>TC232603 weakly similar to UP|Q39482 (Q39482) Legumin (Fragment), partial
           (4%)
          Length = 1123

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 1   LNGKKVCVCGDFNAIRSSEERRSV 24
           + G++ C+ GDFNA+ S EER+ V
Sbjct: 415 MGGERWCIVGDFNAVCSEEERKGV 486


>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
           (Fragment) , partial (59%)
          Length = 1077

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 28/66 (42%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
 Frame = +3

Query: 452 FRKGL*L-CRLGLFGFCFGSYVFSGF---VEKMD*RVC*YNNSFGACEWESDRRVPDAKG 507
           F+ GL*   R G   F     V +GF   ++KMD*RVC     F   EW  D  VP A+G
Sbjct: 69  FQSGL*KGIRFGFMEFSDVYDVENGFQSEMDKMD*RVCQICIYFCFSEW*PDS*VPTAEG 248

Query: 508 IAARWP 513
             AR P
Sbjct: 249 S*ARRP 266


>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
           retrotransposon (fragment), partial (15%)
          Length = 376

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/59 (28%), Positives = 26/59 (43%)
 Frame = -1

Query: 328 WL*LWFYQGVLAGFKG*DFLLCL*VSSQWEISQRY*LYFHCPHS*G*QPSAPE*FSPYF 386
           WL    +   L   K *   +   +  QW  S+ +  + +CP+  G*    P+*F  YF
Sbjct: 325 WLEFQIH*AFLGAVKT*HHSIPKRIPCQWHFSKGWQCFIYCPYPQG*ASPGPQ*FQAYF 149


>BM567708 
          Length = 428

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/35 (51%), Positives = 21/35 (59%)
 Frame = -2

Query: 92  VCPIIALLFCLLM*ITGVRGRPVC*SVGLIFLVTD 126
           V PI + L  L M I  +R RPV  S+ LIFLV D
Sbjct: 142 VSPISSFLMVLSMVIFTIRLRPVLPSLTLIFLVLD 38


>TC216027 homologue to UP|Q9ZSQ0 (Q9ZSQ0) Ethylene response sensor, partial
           (30%)
          Length = 869

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 98  LLFCLLM*ITGVRGRPVC* 116
           LL+C+L+  TGVR +PVC*
Sbjct: 769 LLYCILVNTTGVRIKPVC* 713


>TC217179 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (28%)
          Length = 1762

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 403 FACSYWIRCFGCSVSVC*KQTNSGWYSCSE*GC 435
           F CSYW  CF  S S C        +SCS  GC
Sbjct: 960 FGCSYW--CFDASSSYC-------RWSCSNVGC 1031


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.369    0.170    0.666 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,673,472
Number of Sequences: 63676
Number of extensions: 433269
Number of successful extensions: 4455
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2367
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 2562
length of query: 514
length of database: 12,639,632
effective HSP length: 101
effective length of query: 413
effective length of database: 6,208,356
effective search space: 2564051028
effective search space used: 2564051028
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 61 (28.1 bits)