TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148607.15 - phase: 0 
         (174 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fr...   276  3e-75
TC216515 weakly similar to UP|Q9LHY8 (Q9LHY8) ESTs D15336(C0474)...    29  0.98
TC215298 similar to UP|Q40090 (Q40090) SPF1 protein, partial (21%)     29  1.3
TC203382 similar to GB|AAL09765.1|15982836|AY057525 At1g27000/T7...    27  3.7
CO979268                                                               27  4.9
BM107717 similar to SP|P37225|MAON_ NAD-dependent malic enzyme 5...    27  4.9
TC226476 homologue to UP|Q8L693 (Q8L693) 1-deoxy-D-xylulose 5-ph...    27  6.4
TC224494                                                               26  8.3
TC220760 similar to UP|Q756S8 (Q756S8) AER176Wp, partial (9%)          26  8.3

>TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fragment),
           partial (5%)
          Length = 1358

 Score =  276 bits (707), Expect = 3e-75
 Identities = 138/172 (80%), Positives = 146/172 (84%)
 Frame = +2

Query: 1   MQQDWARLAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGID 60
           MQQDWA LA+IYTRILENPNQQLDRYF+SFKELA NRPLSELRTADEAAAVAGV SE   
Sbjct: 197 MQQDWACLAVIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTADEAAAVAGVASEATG 376

Query: 61  QGVEGEVHPDGADNSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETTIRRP 120
           Q  EGEVHPDGA+ SPK  SAGLTEAEELEKYIAIREEMYKKAKEFDSKIIG ET IRRP
Sbjct: 377 QATEGEVHPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGCETAIRRP 556

Query: 121 YFHVRPLNIGELENWHNYLDFIEREGDLSKVTKLLSYKGTFCSIFSCYRLTY 172
           YFHVRPLN+GELENWHNYLDFIEREGDLSK+ KL       C+ +  Y + Y
Sbjct: 557 YFHVRPLNVGELENWHNYLDFIEREGDLSKIAKLYERCVIACANYPEYWIRY 712


>TC216515 weakly similar to UP|Q9LHY8 (Q9LHY8) ESTs D15336(C0474), partial
           (58%)
          Length = 1320

 Score = 29.3 bits (64), Expect = 0.98
 Identities = 26/84 (30%), Positives = 37/84 (43%), Gaps = 10/84 (11%)
 Frame = +3

Query: 36  NRPLSELRTADEAAAVAGV-----VSEGIDQGVEGEVHPDGADNSPKPASAGLTEAEE-- 88
           NR + E+R  + A  VA       VS  I++G+           SP      L+ A++  
Sbjct: 456 NREMEEVRVVENAINVAPSENSENVSSNIEEGIA----------SPTNRRIYLSRAQDAV 605

Query: 89  ---LEKYIAIREEMYKKAKEFDSK 109
              L K  AIR++   KAK FD K
Sbjct: 606 TNMLAKGSAIRQDAVNKAKAFDEK 677


>TC215298 similar to UP|Q40090 (Q40090) SPF1 protein, partial (21%)
          Length = 701

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 25/99 (25%)
 Frame = -2

Query: 33  LASNRPLSELRTADEAAAVAGVVSEGIDQGVEGEV-------------------HPDGAD 73
           +   R L ELR   E+ + AG+   GI++  EGE+                    P  +D
Sbjct: 361 VGDGRMLEELRRTGESRSSAGLKPGGIEK*EEGEMGGGERGREGGGVDLNLGTPEPVLSD 182

Query: 74  NSPKPASAGLT----EAEELEKYIAIR--EEMYKKAKEF 106
             P P   GL     EA   EK + ++   E  K  KEF
Sbjct: 181 KPPPPPCGGLLLSVGEARRSEKEVVMKGCVEKVKLVKEF 65


>TC203382 similar to GB|AAL09765.1|15982836|AY057525 At1g27000/T7N9_6
           {Arabidopsis thaliana;} , partial (50%)
          Length = 1335

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (51%)
 Frame = +2

Query: 22  QLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGIDQGVEG 65
           Q+ R  N  ++LASNRP++ L    E + ++ +V      G  G
Sbjct: 224 QVRRLANEVRQLASNRPITVLNGGSEQSNLSSLVVPAAALGALG 355


>CO979268 
          Length = 450

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 4/38 (10%)
 Frame = -2

Query: 61  QGVEGEVHPDGADN----SPKPASAGLTEAEELEKYIA 94
           QG EGE +P G  N    +P P     ++ E   K++A
Sbjct: 296 QGCEGEGNPQGTTNEKRANPNPEMGSTSQGERKRKWLA 183


>BM107717 similar to SP|P37225|MAON_ NAD-dependent malic enzyme 59 kDa
           isoform  mitochondrial precursor (EC 1.1.1.39) (NAD-ME).
           [Potato], partial (13%)
          Length = 408

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = +3

Query: 21  QQLDRYFNSFKELASNRP 38
           QQ DR+ NSF+ L +N P
Sbjct: 345 QQYDRFMNSFRSLXNNTP 398


>TC226476 homologue to UP|Q8L693 (Q8L693) 1-deoxy-D-xylulose 5-phosphate
           synthase 1 precursor, partial (85%)
          Length = 2000

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 16/56 (28%), Positives = 26/56 (45%)
 Frame = +3

Query: 13  TRILENPNQQLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGIDQGVEGEVH 68
           T  L+ P   +    ++   L SNRPL ELR           V++G+ + + G +H
Sbjct: 723 TATLDGPIPPVGALSSALSRLQSNRPLRELRE----------VAKGVTKRIGGPMH 860


>TC224494 
          Length = 568

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 57  EGIDQGVEGEVHPDGADNSPKPASAGLTEAEELE 90
           +G+  G E E  P     SP+PAS+ ++  +ELE
Sbjct: 563 DGL*LGPEHEPRPACTSMSPQPASSPVSPEQELE 462


>TC220760 similar to UP|Q756S8 (Q756S8) AER176Wp, partial (9%)
          Length = 721

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 41  ELRTADEAAAVAGVVSEGIDQGVEGEVHPDGADNSP 76
           E+    E    AG V  G  +GVEGEV   GA++ P
Sbjct: 115 EVPRGGEGLGGAGEVGNG--EGVEGEVGEGGAEDEP 14


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,791,815
Number of Sequences: 63676
Number of extensions: 74183
Number of successful extensions: 408
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of query: 174
length of database: 12,639,632
effective HSP length: 91
effective length of query: 83
effective length of database: 6,845,116
effective search space: 568144628
effective search space used: 568144628
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)